Array 1 26208-24777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000001.1 Paenibacillus sp. Leaf72 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26207 32 100.0 34 ................................ GGAAAAAACCAGCGACAAGTGCGAAAAAAAACTG 26141 32 100.0 35 ................................ AACTTACTACTACCCATGACGGGCAGCGTGTAATT 26074 32 100.0 36 ................................ CTTGCGTCAAAGGCGGTAACATCAACGTGCGTTCGA 26006 32 100.0 35 ................................ CGTAATCGTGCGGTTGTTGACGGTCGCTGTGTGAA 25939 32 100.0 34 ................................ TTGTCGTCGATGATAATAAATTGAAATGATGGAG 25873 32 100.0 35 ................................ TCTATAATCAACCATTCAATAAAATGATACTCCAT 25806 32 100.0 34 ................................ TACACCATATGAGGATGTATGTCAAGAATATCCC 25740 32 100.0 34 ................................ CCCCCGTCAATACATGGAAGAGGAGGGAGGTTGT 25674 32 100.0 35 ................................ GTTTAGATCGGCTGGTATATTCATAACCTCTCCCC 25607 32 100.0 34 ................................ GGGTGACATGCTCATATTTACACTAGGTACGTTA 25541 32 100.0 34 ................................ AATTACGATATCGGTTACGAGCGGAACGGACAAC 25475 32 100.0 34 ................................ TAGCGCTTTTACGCGTTCGACTGCGTCCTTATAT 25409 32 100.0 34 ................................ TTAAAGTAGAAGAAATAGAGCACGAACAGATTGA 25343 32 100.0 36 ................................ TAGGAGTTTACCGCGTCCGTCTGCGCTGGCCGCTAA 25275 32 100.0 35 ................................ TTGCATCTCCGTTGCGGGATGTTCGCGCCATAACG 25208 32 100.0 34 ................................ TATTTGGTTTATACGTGTGGTCCACACGAGTTGA 25142 32 100.0 34 ................................ CTGCTCGGTTTTATTAAGGTCCGCCATCTCATTC 25076 32 100.0 36 ................................ TCGGCTGAAAAGGTAGTGTTGCATCCCCTGCATTAA 25008 32 100.0 35 ................................ ACACGTGGAATTGCGTTAACTGGTTCAAAAGCCGG 24941 32 100.0 34 ................................ CATCCTGTCTCATGTCCCGCCTGCGCAATAGTCA 24875 32 100.0 35 ................................ TTGATGGCGTATTCTTCAATCGTGATCCATCCACC 24808 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.9 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : CTATTCTCTGGGCAACATGTATGCAGCGCAATTCGCCGATACACTGGAGCGCGAGCTGCCGAACTTCTGGGAGCTTGTAAGCACAGGGAATCTGCTGCCGATCAAAGAATGGCTCAGCGAACGCATTTACAAATACGGCAAGCTCAGAACACCTTCCGAGTTGATCCAAAATGTAACCGGCAAGCCGCTGGACCCGCAATATTTGGTGAAATATTTGGAGAAGAAGTATAGCGAGATTTATAAGCTTTAGTAAGGGAATAGTTGTAGCTGGTAAGGAAGGTTTGGTTAGTGGGGGAAGGGAGCCGTGCTATTATAGGAAGCGACTTACCTCCACGCGAACCGGAAGCTCCCATGAAAACCCCGGCACGTTCGCACTCCGCTCCCCGTAAGGGGTAATGCGGATTTTGGATTAGCTAAACGGGTGGATAAGGGAGAGGAAAATGAGGTTCGCGAAAATGGGCCTTTTTTTCCTTGCTAGGTAAGGAGTTTTTGAGGGTGCT # Right flank : GTTTATTAATTTATATAAAATGCAAATTTATTTTATTGCTTCCGATGATGTGTATGCAAACGGAAGCTCTTCCTGCTGCACCTTGCTAAGTACGTATTCGAGACCAATCTCCTCTGACTGTTCAAGGCTTAAGGAAGCACAGCATGCGATTGTTACTTAGAGTACAGTCACAGAGACCACTGTGGCTTAGGATATATATATTTGGAAACTTATTCCTTTTTTGAAGGACTGAGTTTCCGTTATTCTGGATTTCACTCCCATTTTGGGCCTTAAGCGGACAGGAGAGCCGCTATTACCTTCATAATCCTCTCAAAATGACGATGGGCAGCGCATTAGCGGCTCCTGAGTCCGCAGCCTGTGCCAAAACCAGTGATTCGGTACAAATAGCGGCTGCTGCGTCCTCCAAGTCTATTTTTGTCTGTTTGTGCAGGGAGCAAAGCTCCAAAAAGAGCAGCATGAAGCTGCCTTTTGGTAAGTAGGTTCACATTTATGAGTTGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56861-55478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000011.1 Paenibacillus sp. Leaf72 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 56860 33 100.0 35 ................................. CAGCCTGAGAGCTATTCGATGCGGTCGCTAGTCAA 56792 33 100.0 33 ................................. TGCCCATAGCGCTAGACCGATAATGATAGAACC 56726 33 100.0 34 ................................. TGGAGAGCAATAAGGATGTCCGTAAGTTGTTGAT 56659 33 100.0 35 ................................. CAGCAAGGTATACATAGACGTTGCAATCTTGCCAC 56591 33 100.0 34 ................................. ATGACATATGGATACATTGAGTTTACGTCAACAT 56524 33 100.0 35 ................................. TATCGAGAGGTAGCCGACCGCCCTTAAGCCTAATC 56456 33 100.0 35 ................................. TTATAGCCGTCTTTGCTGCGGACGCTGTACATGTT 56388 33 100.0 37 ................................. GCCTTGTCTGCATTTGTAGACGTGATGCCAAGATCAA 56318 33 100.0 33 ................................. GACAAAATAAAGCCAAAAATAAATGCGCTACGC 56252 33 93.9 35 ........A....C................... TGGGAGTGGCAGTAATGCTGGCAATAATCGCAGCC 56184 33 100.0 33 ................................. CTGCGGGTGGATGGGATCGAGACGGACGCTCAG 56118 33 100.0 34 ................................. TTTCTTGGCGGCGGTCAGACTGCTAAAGAGGTTA 56051 33 100.0 35 ................................. CGGCAGGCGGCGGCCCTGACATCGTCGAGGAGCAT 55983 33 97.0 36 .....T........................... GTCTTGCGACTCAGGTCAAGCTCTTGCCAAAGAACG 55914 33 90.9 33 ....G........C.....C............. TTCTTTGCCAAACCCCTATACCTGTTAACGACA 55848 33 97.0 35 .............C................... TGAATCGATGCTGCGGACTTGGGCAGATAGTTCGC 55780 33 97.0 35 .............C................... AGTCTGCCAGTAACGGAAAATCCGTTATCGCGGCG 55712 33 97.0 35 ....................T............ GTGCTATATCCCGGATCGCCTTCGTACAATGGCGC 55644 33 90.9 34 .........T...C....C.............. GACACAGCCCAGCCAAGCACCGGGTCGTTTTCGT 55577 33 90.9 34 ..T..........C.............A..... TCTGTAGGAGCTATAGGGGTTATCCCTACAGCCC 55510 33 72.7 0 ......A...T..CA.......CAAT..T.... | ========== ====== ====== ====== ================================= ===================================== ================== 21 33 96.5 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : GATGCTGGGGACGGGGTATGAATCCTGCACAAGCTTTCATCTGGCTGAAGCGATGAGTGAGCGTCTTCCGACGAAACAGCTGGGAACCGCTATTTATGAAGGGGACGAGCGAGTGTGGAAATGGTTTACGGATTTCGCCTATGATTCGGCAGATTTTGCACAGATTGGGCAGTGCTACGACTATGAAGGCTCCGTGCAAAAAGGCGCGGTAGGCAGCGCCGAGTGCCGGCTTTTTGATCTGAAAGAGGCAGTTGATTTTGCCAAGCAGTGGCTGATGATCCATCGTTCGATGGAGTGAAAAAAGGTTATGCCGATACAGGTGCGAATCGGAAGCTCCCATAAAAACCCTAGGGGATTCGCACCTCAAAATTTGTCGAATCATGACGGAAATGAAGGGCTTTGGGAAAAGTCAATACTTTGTTTAGACTTTGTTCGTATGGATGATCTTGAAAATATATACAATTGATGCCATGATGGAATCAATTGTTTGTATTTTCGCT # Right flank : CATAACAATCACAAGTAACCAAGGAGGACCCCTATGAAATTTTGCACAAGAGAATGGTATGAACTCATGCAGATTGCTTCATTTCTTATTTTTCCGGAAACGGAGGAGCAGTGGGAGGAGGAGCTGGCCTACTATCGTTCAGAAGGTGTAGACTACTTGGGGATGCAGCGAGACTCGTTGGAGGAGAAAAAAGAACATCTATTAAAATACCTTCCTGAACCGTTCCATCCTTACATTCACGACGGAACGTTGAATACGATTTACCCGCCTCCTGAATTGAAGGAAATGGCGAAGGAGTGGAAGCAGGAGTATGATGATCGCATGCGTAAATTGGCCGAGACCTATAACAGCTATTATAAATCGATTAAAAACGAGCTTCCGCCCAATGCGGTCAAGCTATTCGAAAATACGCTTCACGATGCCAAAGTCATCACCTACGATCGGCCCGATGAAACAACGTTCATTCTAAACTTGGACTGTCGCGGCTGTTATCATTATTT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 112498-112861 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000023.1 Paenibacillus sp. Leaf72 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 112498 32 96.9 35 ...................T............ GAATGGAAAAAGAAGAGGAAGAACGATTGCGTAAA 112565 32 100.0 34 ................................ TGCGAAGTCTTTTGCCTACCATACGCCCCGAGGG 112631 32 100.0 33 ................................ GAACCGATCATCCTGCGTATCAATCGCAGCTGT 112696 32 100.0 35 ................................ CAGTAAACATCAAATTTGAAGCCATTTCAGCTGTA 112763 32 93.8 35 ...................T.......A.... TTGCCAGTTCCACATAAAAGGTGATTGCCTTGCTC 112830 32 84.4 0 ...............G..T..AT....A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.9 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Left flank : TTCACTATCATTATTCCGCTGCTCCAATCGCACACCCGCCCTTTCGCCTTTCAATTACACCAGCCGCCGCCATATTCAAAGATCAATTCATGATGATTTATTTTCTTTGTATCATCATATGTTCGGTAGGGGGCTGACATGTGTACAAGCTGAGGTTAGCCATATGGATCAAGCGTAAAGAGGTGTGAGCAGGGTTGAGCAGGCGTTGCCGACTTTTGACGACAGCTCTTATATCAGATAGAGATAGAAGCCTTATTATTCGCGTAAATAAGTATACTTTTTTCTTTCTATAAGCCTAATCAACCGTGGCCGTATTTTTGGTGCGAATGTGAAGCTCACATAAAAACCCTAGGTCACTCGCACCTCAGATTTTGTCGATTCAAGTCGAAAACGTGCTATTCAAGTAAAAGTCAATACCTCAGTCCATTTTTCTTGCTTTGTTTTTATTGAAAAAATGCAGCATTAATGCCATTATGGAATTAATTATGCATTTTTTCGCT # Right flank : CATATTGGCTTGAGTTATCTTGCCAAGCAAGCTTTGTCGCGCTTTTGGTGGGCGTGTATATACAGCGCCTAATGTAGCCTCTTTAAACACAGTCGCACTCAACTATACAGAAACAAACGTGCTAGCAATTAATAGTCTTAATACGACAATTTACACCTCTATGCAAGCAGAAACTACTATTGTATGATTAAATTGGATTTACTTATTATTTCTATTTAAGTAAATTAATTGAAATAGGAGGTTCAAATGAAAAAATCCATTCAGAAAACTTTTCTCGCCACCACCTTAGCCCTTGCATCCTTTACAAGTTTCGCATTACTAGCTCCAACAACGGCTTCAGCAGCTGGAACAACCTTTATAACTTTGAAAAAAGGAAATTCTACGTCACTCTTTGGTGCGAATAGCTATGTTGTTGCATCAGGAACATCTATTGTTTCCGTATCTTCATCTGGATGGCTAACTGCTTTAAATACGGGCAGCGCAACAATTCGTGGCTACAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 232212-232845 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000030.1 Paenibacillus sp. Leaf72 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 232212 33 100.0 33 ................................. TCAGGAGTATATATAGTTTGCTCACGATTGACT 232278 33 100.0 33 ................................. ATGCGCGGGATGCAGCAGAGATTGGCGATACTG 232344 33 100.0 35 ................................. TTTGCAGCGGCAATGCCCGTTACCCAATCCATGCC 232412 33 100.0 34 ................................. GTATCATCCCATGGCTTCAAAACGGAATCGCCAT 232479 33 100.0 33 ................................. CGATTGGCGACAATAAGCCTAGAAGCTACTACC 232545 33 100.0 33 ................................. CCTGCAAGCGACACCCTGATAATATCCGTGTTA 232611 33 100.0 34 ................................. GCATTACGAGGGATGCATACGGCGAGTACATTGA 232678 33 100.0 33 ................................. CGTCAATACTGTCCAGGACAGGTTTGATCTGAT 232744 33 100.0 36 ................................. ATCGTCACATAGTAAAACAGATCCAAACTGGTTGAA 232813 33 81.8 0 .....................TAC..GAA.... | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.2 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : CATGGCACGAATGAAGCGGTGGTGGCGGCTATTTTGCGCGAAGGCATTCAAGCGATGGGCCGCCAGTATTGCCATCTGTCGGAGGGGCTGGATTTTGCAGCCCTTGCGGGCAGCCGAAGGGGCAAACTTGTGATTTTGGCAGTGGATACGCAGCTTGCCGCGGAGCTCGGGGTTGTTTTTTATTATGCTGGCAATGAGGTGTGGCTGGCTGAGGAAATTCCGGCGGCATGCTGCCGGAAATATGATTTGCCGATTGATACGGTGAAAAATTAGGTAAAAGAATTACAATTTTCGCTGAGGTAATCGCAGCCATTTTTTGGTGCGAATGTGAAGCTCCCATGAAATCCCTAGGGGATTCGCACCTCAGAAAATGTCGATACGTGTCGAATTTGAATAACTCTCTAAAATGTCAAGGTTTTAATCATATACGCTTAGCATTATTGTTCTTGAAAAGATCGTGAATTGATGCCATGATTGGATCAATTGTATGTAATTTCGCT # Right flank : CATTTTTATGGTCGCACAATAAGGCAACAACAAATGACTGAAACATCTGTTGCATCTCGTCAGACTGCGTTTTTCAAACAAATCAAAAAGAGTATGAAGGTTTTAATAGCCTCCATACTCTTTTTATGTTCGGCAGGGAAAGGAATTTCAGGCTGCCGAATTTATAATTCGTCTGGCGATAAGCCAGTAAGGTAAGGCTTTATCCTTTTTTGATGCCGTTGTTCGTCAAGCAGCTGTGCCATCTGTTGTTGGACGCGTTTCGTCTGCTCGGTCGCGAAGGCAGGATGGGCGAGATTGCGTGTTTCAAGCGGGTCAGCGGTCAAATTATACAGCTCGTATTCCTCAGCAACAGGAACGGTTTTGATAGCTGCAACATAGCAGATATTAGAGGCAGAGAGTGACACGGAGGCTGCACTACCGATATGCTGAGCGGTCGGCTGAAAAGTTACGTCTCTAGCTCCCGGCTCGCTCCAAAACTGCTCGTTATCATAATAGCGGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 365212-364187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000033.1 Paenibacillus sp. Leaf72 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 365211 32 100.0 33 ................................ GCAAAAAAGGCGAACGTTACAAAAGCCGGGCTA 365146 32 100.0 34 ................................ CCATCGGAACGCCAGCTGCTAGGTGAGCATCTAT 365080 32 100.0 35 ................................ GATAATTTGGAAGCTGTTAAGGATAAGCGGTTGAT 365013 32 100.0 34 ................................ AAGGTATCGACCATAAATATCCGTATAGCCAACT 364947 32 100.0 34 ................................ TCGCTAGTGAATTTTTGGATAAACTGAAACGAAA 364881 32 100.0 35 ................................ CGAACAGGAGTGGGAACGTCCTCACCGCGACTATG 364814 32 100.0 35 ................................ ACGGAAATGAAACCGTACACGGCTGAGTGGCATAA 364747 32 100.0 34 ................................ CTGATGCGTCTCCAGCGATTGCAAACCGGGGCAC 364681 32 100.0 34 ................................ TTACAATTGCGGAAATATCAACAGATGCTGCGGG 364615 32 100.0 34 ................................ TTTGGTGACAATGCATCCTTTATTGGTGGATTTA 364549 32 100.0 33 ................................ TAGTCATAGCTCTATAAATACGTGCATGCGCAA 364484 32 100.0 34 ................................ GTCTTCCCACCGCGTCGCCCGCAGTTGAGTACGT 364418 32 100.0 36 ................................ AAATGAGCTGATGGCTATGCTCAATAGGGCCATCGA 364350 32 100.0 33 ................................ CAGGTTGCATTAACCTGGTCACCGTCTCGGCTG 364285 32 96.9 35 ............G................... TGCGGGGGTGCGTAATACAGCACTCGGCGGGGCTA 364218 32 90.6 0 ..........A.G............A...... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.2 34 GTCGCTCTCCGTACGAGAGCGTGGATTGAAAC # Left flank : GCTGCGACAGGTTGCGAAGTGCTGCCTAAATTACGGACAGCGTGTTCAAAACTCTGTTTTTGAATGCATGGTAGACCCTCTGCAATTCAAGCAATTGAAAGACCAGCTATCTAAGGAAATTAATGAAAATACTGATAGCCTGCGCTATTATTTGCTTGGTGCCAACTGGAAGAAGCGTGTGGAGCATGTAGGTGCCAAGGAAGGCTATGATCCTGAAGGGATTTTGATAGTGGATTAGTTGTTAAGATACACTTATTATGAAACGGGAAAAGATTAGGTGTATTGATTTAGAACAATATATTTAAGTCGAAATTACTGAATAAATTTTTGCTGTGCGAACCTTAAGCGCCCATGAATTTCCTAGGAGGTTCGCACACTGTATTTTATATGGCGGGTTGCAATAATAGTATTTATTTTAGCTCATTGATTAGACTGGGTAGATAAGGTTCGCGGAAAATATGTATTTTTCCCGCGCTAGTGAAGGCTTTTCATGGTATGCT # Right flank : GCAATTCAATGACTGACCTGATCGGCGGAAATATTTTAATTTAAAAAACTACAATAATTTACAAACGAAAAAAGATGTTTTTAGTCATGAAGACTCATGAATTATTTTGTCATTCAATAGTATACTTAATGTTGAAATATATCCCAATATTTCAAATTTTATATTATTGAAAGGTGTGTTGTGATTTTGAAGAAGAGCAAGTTAGTTTTATTAGGTATGGTTATTATGTTGTGCATGATTTCTGCTATTCCTGTCTCTGCCCAATCGGTAACTAATTCTAACTCCAATGTCATTGCTCCTGCAGCATATTGTCCGTCGTGTACGATGATTGGCCTTCCGTATCCTAAGAAAGATTATTCCCGCTCTGATTTTATTGGTGCAACTATTCAATATAACGGTTATACATACCGTTTCTTGGAAATAGATGATAGCTTGAGCACTTCCACACGTTGGTGGACGGTATGGTATAGATAATTTGATGCCCATTGCTCCTATAGTTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTACGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 160120-161633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000005.1 Paenibacillus sp. Leaf72 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 160120 33 100.0 33 ................................. ATACAACTCATTTACGTCCATTTCTTTTCCTCC 160186 33 100.0 37 ................................. CTGTGAATGTGCCATCGGCGCCATCACCATTAAGAAC 160256 33 100.0 34 ................................. AATGATGCCATCCTTGAAGAGAACCTTCGTTTCT 160323 33 100.0 33 ................................. CTCCTCAGTTAATTTAGGTTTATCAATCCGTTG 160389 33 100.0 34 ................................. ACAAGAAAATACGACGACTACGATAAACGTTTAA 160456 33 100.0 37 ................................. AAGTGTGACAGGATCATGCAACTCGATCATCGTAAAA 160526 33 100.0 33 ................................. ACGTCCCAAAATAAACCCCATCCAGAGACACGC 160592 33 100.0 34 ................................. CATTCGAGGTGATATTTAGTTGTAACGATCCTCG 160659 33 100.0 33 ................................. CCTGTATCATCAATAGCCAAGACATAAAAATTA 160725 33 100.0 34 ................................. ACTTTCGGGAATATCTATTAGCTCCAGCTTGTTA 160792 33 100.0 34 ................................. ATCGTTCGGGAGCCTGACTTGCTGCTTGAGCATG 160859 33 100.0 35 ................................. CATCTATACCCCGAAACGACCTATGAAAACCTTGG 160927 33 100.0 33 ................................. CGCTTGGTCGGCTTGCTAACCGTGAGCTGCGTG 160993 33 100.0 34 ................................. AGTTGAGTGTGAAAAATTCTGAGATGCCAAATGG 161060 33 100.0 33 ................................. TGCAGGATCTTGAAGCAATTGTGATCGATGATA 161126 33 100.0 36 ................................. CGAATGGGGCGATCCACCGCCAGGCGGCATTATTAC 161195 33 100.0 35 ................................. TCATCGCAATAGGATGTAACCTCATACCCCATCTT 161263 33 100.0 35 ................................. ATACTGCCCGCCTCCTTTATTGGACATAAGCCCGA 161331 33 100.0 34 ................................. AGCCTTGAAAACATGAAGGAATTTATCAAGGCAA 161398 33 100.0 35 ................................. CTCAAGCTTTTCATATATTTACGTGTAAAGTCTGT 161466 33 97.0 35 .........T....................... GTGTTGAAGGGAATTTTCCGCGCGGCGAAGCTGGG 161534 33 97.0 34 ..........A...................... TCCCTAAAGGTTAATCCGCGAACTGACGTTCTAT 161601 33 84.8 0 .........T...T.......A......A...T | ========== ====== ====== ====== ================================= ===================================== ================== 23 33 99.1 34 GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Left flank : TTGTATGCTTGTGTTAATTACGTATGATGTGAGTACATCAAGCAAGGAAGGGCGTAGAAGGCTCTCGCGAGTGGCGAAAACCTGTCTGAATTACGGTCAAAGGGTACAAAACTCTGTATTTGAATGTATTGTGGATGCGACAAAATTCCGCCAATTGAAGTATGAGTTGGAGGAGTTGATCGATAAGCAGACGGATAGCCTGCGCTTTTACAATTTGGGTGACAATCATAAAAGCAAGGTGGAGCATATTGGGGCAAAAGAAGCCTATGATATGGAGGCTCCGCTCATTCTATAGGCAAAATTTTTTTGCGGATTCTTGGTGCGAATGTGAAGCTCCCATAAAAACCCTAGGGGATTCGCACCTCAGAATTTGTAGTAATTTGTCGAATTTGAGTTACTTCAAGAAAAGTCAAGGTTTGACTCAGATTTTTTTGGTATTATATTTATTGAAAAATGGGGTGATTGATGCCATGATGGGATCAATCACTTGTATTTTCGCT # Right flank : TTTTGAATTAGAGGTAGATGCGACCTTTCAAAAAAAGTCGCACTCCGTATTGTAGAAGAACAGTAAGTGTCACGGACTCAAGGTAAGATTAAAAATCAACTTAAGAGGTCATATGAAATACGCAGGACCTCGAGTAGCACAGCCTAATTTTTAGCAGTAAGACAGCGGAAAATTTCATGATAGCACGGGCCTAACGCTAGAATTTAGCGTTAGGCTTTTTTTGTTTTCAAGCTCCTTTTAGCTGGTGTTTGGAGATAGGCATAAGCAAATTTACTTATAAAAACAGTTAAATCTTTGTTATAAAACACAAAATTACAATAAAATATTTCTGTATTAGTGCCTACTATTTTAAATTAAAATTACTAGAATTGTATTAACTTTCCTTTATCAGGCGCCGATAATGATAGAAATAAAATAAAGTTAAACATATACAAATTACCATCTGAGAGGGAGACACAAACGAATGGGTGATCAAGTGCTAAATTATGGAGATATTCGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 171213-172195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000005.1 Paenibacillus sp. Leaf72 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 171213 33 100.0 35 ................................. TTTACTGCGACAAGGCGTTTTACAATCGTCTTTAC 171281 33 100.0 35 ................................. AGCGCCATAGCCAAGAAGTTTCGGCTGACGCAGTA 171349 33 100.0 35 ................................. CTTGTGATTATACGACCGATCATACAATCGTACTC 171417 33 100.0 34 ................................. TAATGGATGGCCTATTGATCAAGCCTAGATTGGA 171484 33 100.0 36 ................................. TGGCTGAACTTATTAAGCAAGAAGAGGCTGGAGCTG 171553 33 100.0 35 ................................. ATCCTCAATCAGCTCCACGCTTGACCAATCATACC 171621 33 100.0 34 ................................. CAAAGCCACTTAATAACAATAGACACTCCCCACC 171688 33 100.0 35 ................................. GACCTTAGGACGAAAGACGATATGTCTATCTCGTT 171756 33 100.0 36 ................................. ACAGTCTGAACGGCGGCACTAGTTGCCGTTGTCAAT 171825 33 100.0 34 ................................. TCGTCGTCGTCTTCATCCATTTGAAACTTAATCA 171892 33 100.0 34 ................................. ACCGTAGTAAAGGATACGAAGAGGGCGCATTTAT 171959 33 100.0 35 ................................. TAGAGCCAACGCTAGAATACGATAAGACGCTTAAG 172027 33 100.0 34 ................................. TTGTTTATATTGTTGGGTTGCCGTTGCTTTCGCA 172094 33 97.0 36 ...................A............. CCAAATAACATCTTGATCCCAATCTAACTCAATTCG 172163 33 90.9 0 ...................A.A.....G..... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.2 35 GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Left flank : CATATGCTCGTATTAATTACGTATGATGTGAGTACATCAAGCAAGGAAGGGCGTAGAAGGCTCTCACGAGTGGCAAAAACCTGTCTAAATTACGGTCAGAGGGTACAAAACTCCGTATATGAATGTTTTGTAGATGCGACAAAGTTTCGCCAATTGAAGTATGAATTGGAGGAGCTAATCGATAAGCAGACGGACAGCCTGCGCTTCTACAATTTGGGTGATAATCACAAAAGCAATGTGGAGCACATCAGTGCAAAAGAAGCCTATAATATGGAAGCGCCGCTTATTCTATAAGCGAAAAAATTTTTGCGGATACATGGTGCGAATGTGAAGCTCCCATAAAAACCCTGGGGGATTCGCACCTCAGATATTGTAGAAAATTGTCGAATTTGAGTTGTTTTATGCAAAGTCAAGGTTTGATCCAGATTTTTATAGTATTATATTTATTGAAAAATGGGGCGATTGATGCCATGATGGGATCAATCACTAGTATTTTCGCT # Right flank : TTTTATGTACTTATAGGGAGATGAATATTGTATCTCTGTCAATAGAGTAGACACAAGAAACCGAGATTTTTAAGCTGCCTTTCGGTACCTGCGTTCGCATTCATTGGGAGTGAGATACCCGATGGTCGAGTGAATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 335112-334067 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000034.1 Paenibacillus sp. Leaf72 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 335111 33 97.0 35 .............C................... TCGCTCTTCGGGGCTTATCGCAGCTCTTTTTTGGT 335043 33 97.0 33 .............C................... GTATATGACTGTAAAAAAACATGGGGTTTAGTC 334977 33 97.0 35 .............C................... AGCTCCATAACGGAACATTTCAACAATGCGACGGT 334909 33 100.0 34 ................................. GTCAATGAACTCGCAGCAAAACTCTTGCAGCCAG 334842 33 100.0 33 ................................. CATAAAAACAGTTGACGTCCGATAACGGACATG 334776 33 100.0 34 ................................. ACCTTAGCAACATCTCGGCTCTTAACTCTATATC 334709 33 100.0 35 ................................. ACAACTACTGTAATATCACCTTCATAGATGTTGAT 334641 33 100.0 36 ................................. CTCTAGTGGCCATTTGCTTGATTATCATAGCGGTTA 334572 33 100.0 34 ................................. TGCTTCGTTTATCATCATGAGTAAAGCTTGCCTT 334505 33 100.0 37 ................................. GAGAACCCGAGCATCGAAAAAAGCAGCAATCGCACTC 334435 33 97.0 35 .............C................... ATTTGTATGTCATTATCATACAATCATTGTATGTT 334367 33 97.0 33 .............C................... CATGATAACAGCCGCCTGTTCTTTCACCGCGAT 334301 33 97.0 33 .............C................... GGATTAGGGCTGCTATTGCTTGAATCCACCTGT 334235 33 97.0 35 ..............T.................. ATAATTGTGAAATAAAGAGTCGTAAGCAGCTTGTT 334167 33 97.0 34 .................T............... CGAAGCGCATAAACCTGTTCGTCTGCTTTACGGC 334100 33 81.8 0 ........................TG...TTGG | T [334075] ========== ====== ====== ====== ================================= ===================================== ================== 16 33 97.4 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : TGCAGTTGAGGAAAGCGCAACGCTGTCGGAGAAAACGGGAGAAGCATTCGAGCGTATTACGAAGATGGTCAACGATACAGGCCATCGCGTATCCGAAATTGCCGCAGCGAGCGAAGAGCAGGCGGCCCAAGCGACAAACGTGTTGACTACCGTTGAAAATGTTTCCGCTGCTGCCGAGGAGTCCGCAGCGAGCAGCGAAGAATCCGCAGCGACCGCGCAATCGCTGGCCCAGCTGGCGGATGATCTCCAGCATACGGTGTCGAGCTTTAAGACGGCGTAGTTGCATAAAGTTTTTTAGCAGCTGAGATTACATGCCCAGGTGCGAATGTGAAGCTCACATAAAAACCCTAGGGGATTCGCACCTCAGAAATTGTAGAAGCATGTCGATTTTGAGCTATTTCAAGAAAAGTCAAGATTTGATCTAGATTTTTCTAGTATTATATTTATTGTAAAATGAGGTGATTGATGCCATGATGGGATCAATCACTTGTATTTTCGCT # Right flank : TGAGAAAATAGGAATAGCTACATTTACCTTTCTGAAAAAGTATACGGCCCAAACTCAAAGGAGTTTGGGCTAAATTTGTAGCATAACGTAATTAGTTTGATGAGCACAGCGTGTTCTTCATTATGTGTCAGGATCTATAGTCGAATATCCTCAACCCGTTCTATCGGTAGACTGTCGGTTGTCATCTCGATAGCTTCTAATGGATCGTTCATGCGGAGAGTACCGAAGCTCAAGCCAGTTAAGGCCTCTATGGACGAAATTTTCACCTGGAACGTTCGAAACGGAGCGATGGCGGCGGCCTCTAGATTGCTGATCAACTCTTTTTGCGATAGCAGGAATGCGACAGCGTCCAGTTTGCCGTCCTCCATAACGACAACGACTACCTTCCAGAATTCCTCCGGCAGCTTGATCCCACGGTAAGCCTTATCCTTGTCGCGGAAGACGGGACCTGTAAAGACAGTTGCTTTCATATTCATATTCTGAACGTGATTCAAGATATG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCGTACGGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 355808-355972 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000034.1 Paenibacillus sp. Leaf72 contig_8, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 355808 31 100.0 37 ............................... ACTACGTGTGTCGGGAGCATTAAGTTACCTTCTGCAC 355876 31 100.0 35 ............................... GCCGACTAACATGGTCTGCGGTATCACTCATTAGC 355942 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 100.0 36 GTCGCACTCCGTATGGGGTGCGTGGATTGAA # Left flank : ACCAAGATTTTCAACCGTCTGGGCATTTCGGTTAATGGAGAAGCAAACGGCTTGTAACACATAGCAGTAAAAATGTTCATCGTCGGCGCTAGTGTGCCGGATGGAGATGGAGATGAAGCGTTCCTTCTGGGACGCTTTATTTTTTTGAGGGTGGCATGGACTTGTGGGGAACGATTGGGGTGAGCTATAGCGTCGCTAGTATCAGCGGTATCGGCGGTGGATTTCATGCTGAATTAGGGGTTGTATTGTTTTCTGCCATCCCTTACGATGAGAGAAAATAATGTAAAAGAAGTATGTAAGGGAAATATGCAAAAGACTGGTGCGAATGTGAAGCTCCCATGAAATCCCTGGGGGATTCGCACCTCGAAACTTGTCGAAAACGACTTATTTTCATGAGAACGGGCAAAAGTCAATTTTTGTTTTAGACTTGTTTGGCATTACTTTTTTTGAAAATGTGCTGGATGAATGCCTGCTTGGCATCATTCATGGGGATTTTCGCT # Right flank : AGCTGCTTGACCGCACCTATTTTTTTCTTCCGCAAACAGTCGCACTTAAATAGATTTGGTGGACACAGCAGCAGCTATTTCGACAGAATCACAGGTTATGGCACAAGCTGCGGACTCAGGAGATGCTAATGTGCTGCAAATGATCATTTTGACGGGATAATGAGGGCAATAGCGGCTTTCCAGTCCGCTTAAGGTCTAAATTCAGTTTAAAAGCCAAAATAGCGGAATCTCAGTCCTTGAAAAAAGAGTGAGTAGCCTGAGCCGCGTACTCTTAGCAAAATCGCAGGCCATTAGAGCTCTAAAGTTATACCATTCTACTTGCAACATCAACAAAAACCGTTCCTTTCGTTAATGGCAGACTCTGCTTGCCCTTAACGAAGAAACGGTTTTTGTCGTTTTACCTTTTATCTTTTACCTCTCACCTTTTACCGATCAACCTTCTAAAGCTTAAATTTATCGATTTGCGTACGCAGCTTCTCCGCCATGTTGGCGAGCTCTGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGGGTGCGTGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2833-129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMLV01000008.1 Paenibacillus sp. Leaf72 contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2832 32 100.0 35 ................................ GCTTGATATGGTTACGATTAAACGATTCCAGCTAT 2765 32 100.0 35 ................................ AGGCGAAAAAGAATTTTTAAAAAGGGCTTGCAACA 2698 32 100.0 35 ................................ CAATATAAGACAAGAATCAGTTTTTGTCTAGTTGC 2631 32 100.0 37 ................................ CTGGTGTTAATCGCCATCTTGTTTTACTGGTGGTACA 2562 32 100.0 36 ................................ ACGCGGCTAACCCCCTACACCGCATTGAACAGGTGG 2494 32 100.0 34 ................................ CAAAAGTCGGGATTGGTAATAACCTTATCCCATA 2428 32 100.0 34 ................................ TTTTTGTTCTACTTGCAACTTGCCGTTGTCGATC 2362 32 100.0 34 ................................ CGCCTACAATCCCGACAACAGCCCCAACGGTAAT 2296 32 100.0 33 ................................ TTCGCAAGGTTTCGGAATACGTGGGAGCCGAAA 2231 32 100.0 35 ................................ ATAACCTCTCCCCCATCGTTGAACCTCTCTCCTCC 2164 32 100.0 33 ................................ TTCCAGTTGTTTCCATATATGCAAAAACACCAC 2099 32 100.0 35 ................................ GTGTAATTTCTTACACTTCGTACACATGACTATTG 2032 32 100.0 35 ................................ ATCTGCTCCGTTGGGAGCTTTGCCTGAAGGTTAGC 1965 32 100.0 35 ................................ TCTATAATCATCCATTCAAGAAACTGGTATTCAAG 1898 32 100.0 36 ................................ TTTAAAGGTTTTTCCGAAAGAACTCTATCGTATGGC 1830 32 100.0 33 ................................ ATCGTTATGCGATTTTCAAACTGTATCAAACGC 1765 32 100.0 34 ................................ ATGGCCGTAAGCATCTCTTCCAGCAAATCATAAA 1699 32 100.0 36 ................................ AGACGATTCGCTGTCGGCACTCCAGCAGCGTTTAAC 1631 32 100.0 35 ................................ AAGTATTCACTCGTATCCGTCCGCAGCATGTTTGG 1564 32 100.0 34 ................................ TTTTACGATGAGTCGGGCAGTTTAGTTAAGACGA 1498 32 100.0 35 ................................ CAACTGCCTACGACGCATTAAAACATCATGTTCGT 1431 32 100.0 37 ................................ TAGTTTTTGCAACTCAATCTGAAGGATTCGGGTTCTG 1362 32 100.0 35 ................................ TCACATGCTGTATTTAACCGTAGTGGAATATTACC 1295 32 100.0 33 ................................ AAACTTTCACCCCCTTATGGCTGATATTGATCC 1230 32 100.0 35 ................................ TGGGTACTCCAAAGGCTCAACCATGTTGTAGGTGT 1163 32 100.0 34 ................................ TGGGTACTCCAAAGGCTCAACCATGTTGTAGGTG 1097 32 100.0 35 ................................ TATTAAAGATTTTTTGTTTGGTGTGATGAGTCGAT 1030 32 100.0 35 ................................ GCATCGAACAATAATTTACAAAGGAATGATGAGAT 963 32 100.0 35 ................................ TACGCAAGGTTTCCGAATATGTTGGTGCTGAAAGT 896 32 100.0 35 ................................ GTTAATGCGTATGACTGAACACGGTTTCCGATTTG 829 32 100.0 33 ................................ CTAATTACGACGAACGGGCGATATTTTTAGGCG 764 32 100.0 35 ................................ ATAGTTTTCCAGGATACGCCGTTTAATGCCGTTAA 697 32 100.0 35 ................................ ATAATCCGGTCTAGGATCGACTTATACGGATTTTT 630 32 100.0 35 ................................ ACCTTTATAATACATTTTGACAACGGACGTAGTAG 563 32 100.0 35 ................................ GTTATTTAATTGCCTTAAGTGTAGGCAATTTTCCC 496 32 100.0 35 ................................ TTGACTCGATCAAGTACCGCCGATCCTCCGCTAAC 429 32 100.0 35 ................................ ATGGGAGAGGACACAAAACCCTACTTGTACGTGTG 362 32 100.0 36 ................................ TCCGTTCCCTCAATACCAGCTGCTAAGCCAGCCCCG 294 32 100.0 35 ................................ CGGAATGTCCCCACCGCCATTCATCGCTATGACCT 227 32 100.0 35 ................................ AATACTATAAGTATGCGACGGAAAAGAAGGCAGAT 160 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 100.0 35 GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAC # Left flank : GCGGTTGCTCCATTGCTGCCAAGCAGCGAGGCATTTGCGGACAAGCTAGCTCCGCTCGTGGATCGGGTGTGCATAGACGATTATTTTATGGGTGACGGAAGCGGCGGTAAACGAACTAAGCGACTTGGACTAGAGACACTGTATGCGCAGCTGGGAGCAGAGGAATGGAATGAGCCTTCGGCTTACGAGACTGTTTATCGGCAGTTCCGTGAGGTATTTGCGGAAGAGCAGCTTTTTATAAGTCAGGCGGGGTTTGAGCCTTGAGAGGGTGAATTTTCACAGGAAATGATTGTAAGTGGCAGATTTGGATGCTAGGATAAAAGAGGAGTGTCGCGCGAACGTTAAGCTCCCATGAAAACCCCGGGAGTTTCGCACATTGCGCCAGATCAGGGAAAACTCGGATTTTTATTTCCATGGGCATTAGGAAATGGAGTTGAATGAAGAGGTTCGCGGAAATGTACCATTTTCCCCTTGCTGCGCAAGGCTTCATGAGATATGCT # Right flank : CTATCAATATATGGTATAATCTGTATCTCTGTCAATAGAGTAGACACAAGAAACCGAGATTTTTAAGCTGCCTTTCGGTACCTGCGTTCGCATTCATTGGGAGTGAGATACCCGATGGTCGAGTGAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //