Array 1 1091913-1082258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012175.1 Metallosphaera sedula strain ARS120-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1091912 24 100.0 39 ........................ CTCTTCAGGAGAGACCGCTTCGTCCAACAGCTTTCTATA 1091849 24 100.0 39 ........................ ATACTTTTCATGTATTGGTAAAGCGTAGTGTTCTGGATT 1091786 24 100.0 42 ........................ TTATCTGAAGTGAAAATATATACTTGAGTTTCTCCATCATAT 1091720 24 100.0 37 ........................ CACTTTTCGACTACATTAAGTAATTTCTTTTTCACTG 1091659 24 100.0 39 ........................ GTTGTCGCCCCCTATCTTCTGGCTAGGATTTTGCCAAAT 1091596 24 100.0 39 ........................ TGCTAAACCTCACAAAATACAGCTTGTATTCTCTTCTTT 1091533 24 100.0 40 ........................ GATAAAGTTAGGAAAATGTTTGATGAAATTTACAAATATT 1091469 24 100.0 40 ........................ CGTTTGTTAGAAACTATCAAGAATTTGGCTTATAAATTCT 1091405 24 100.0 42 ........................ TAATGAAAATATGGATAATATAAATTGTGGAAGATGGATAGT 1091339 24 100.0 40 ........................ GCTGACATTTTTTTCACTAAAATATAGTTCTCTCTTCTCA 1091275 24 100.0 39 ........................ TTACTGTATGTGAACACATAGACCTCTGTCAAACCGTCA 1091212 24 100.0 40 ........................ AATTTAATGTTGAATTTTCCGCCTAAACCGACTGGGGCTA 1091148 24 100.0 40 ........................ AAATAATGAAGATTATATTTTCCCCACTACGTTTTTGGGT 1091084 24 100.0 41 ........................ TCTTCTTCTTCTGTTGATCTAAATATTGCGCTAAAACAAAC 1091019 24 100.0 45 ........................ CTTCTAAAAAGTTTTCAAAACTATCCTCCTACTAACTAATTATTT 1090950 24 100.0 41 ........................ TGTTTAAGCAAAAAAAGAAGGCGCAAAGCGCCGAATAACTT 1090885 24 100.0 41 ........................ GAATGATTTGCCTTAGTTGGAATGGATCAATCACCACGTGT 1090820 24 100.0 44 ........................ GGCACTTTCATTCCGTATTGTTCTAGCAGAGGCGCGAACACTTC 1090752 24 100.0 42 ........................ AGGAATTTCCAATTAATCTATCATCTAGGAAAAAAAATCCTA 1090686 24 100.0 43 ........................ AACTGATGTCTATGCTGTTGGGTATCACAGTCCCAGTAAATCG 1090619 24 100.0 40 ........................ GATTTGGGATTAAAGACCTAAATAATGTCTCCGATCAACA 1090555 24 100.0 41 ........................ TGTATATTTCTCTATTTCTAACAAATACTTAGCTTCCGCCT 1090490 24 100.0 42 ........................ AAAGAGTACATTAAGCAAAAGTATAACGCTGAAATATTTTCA 1090424 24 100.0 41 ........................ GCGACAAGTTAAAAGATGTTTTCATCCAATAATTTATCGTG 1090359 24 100.0 38 ........................ CTTATTGCCCAGCATCTCTTCCAGATAATCCATTGCGT 1090297 24 100.0 38 ........................ TCCTGTTAGTGTGGCGAAATTGTTTATGATGTTAATAG 1090235 24 100.0 42 ........................ TTTATACATATGTCATGTCAAGTATATAAATCTTTCTCTCTC 1090169 24 100.0 41 ........................ CCCTAACATTAGCGCTTGAAGTAGTTTTTGAAGGCATTTGC 1090104 24 100.0 41 ........................ CCATCAGAACAACTATGGCAGGTGTCAACGTCAGTTATGAT 1090039 24 100.0 39 ........................ ATGTTATTGTCTGTACCTTTGAACCACCTTTCCCAATCT 1089976 24 100.0 45 ........................ GTTGGCCTTCCCATCAGCATCAGTAATTGGTAAACGTATTCCCAT 1089907 24 100.0 40 ........................ TTTGCTCCAACGCTTCATTCAATTCTTCTTTACTTCTCAT 1089843 24 100.0 40 ........................ TCCTGTAACCTCTGCTTGAGAACAAATGCAATCGCTTGAT 1089779 24 100.0 39 ........................ ATGACGAATGGAAGGTAATTCTTGACGCTTTAGGATTCA 1089716 24 100.0 39 ........................ TACTCATCTTTTAGCTTTGATCTAGCGTATGCTGGCAAT 1089653 24 100.0 36 ........................ TCACTGTCGGAGTTCCATCCGTGGCCGTCAATTGGT 1089593 24 100.0 41 ........................ AATGAGAATTTTTTACATTTTTGGATACCGATAGAGACAGT 1089528 24 100.0 39 ........................ TATGATGTCGTCAGCACGGAGGCTGGGCGCACCATACTA 1089465 24 100.0 40 ........................ CGCTGATTCAATAATGATAATGATAGTAGAAAACCTAACT 1089401 24 100.0 43 ........................ CTATTCCTATGAAATTAGTTAGCAATAGGGTAATTACGGACTG 1089334 24 100.0 41 ........................ TCAAGTAACACATTTAATGTGACGATTCATGTAACTAGCTT 1089269 24 100.0 40 ........................ CTACTGTTAGTGCTACCACTACCATGACTTGGTGGGGTGC 1089205 24 100.0 37 ........................ TACACAAAATAGTAAGTTTCCGTCGTCGGTTGTGGCT 1089144 24 100.0 40 ........................ AAAGAAGTTGAGAACAAAGAACCTTTAGTCATAAGTGAGA 1089080 24 100.0 41 ........................ CCTTCTTTTTTCCTTGTTTATTAAATAGGAACATCCCATAT 1089015 24 100.0 39 ........................ AACGATCTTGAACGTCTGAACGTCTACTGGGAGAGTGAA 1088952 24 100.0 39 ........................ ATACACAGGTGGTTAACATGGAAGTACTAAGGTTCCAGA 1088889 24 100.0 39 ........................ GGCAGAACAGAGGTATGCGTGGCAGAAACTAAGCGGGGG 1088826 24 100.0 41 ........................ ACTAGATACGCCATTGCTTCTCTCACGCATCTTTCTGCGTT 1088761 24 100.0 39 ........................ AAGTTCACTGGGGGCGTGGGGTTTAACGTTAATATCAAT 1088698 24 100.0 44 ........................ GGTGAAAAGGAAAGAGAACGGGCGGGCGAAACGGGGGCGATTTG 1088630 24 100.0 40 ........................ TTATATTTCTGCCATTTTCTGTAGATAATGCCCTGGGAAT 1088566 24 100.0 40 ........................ TTTAAGCGTTACGGCTTAGAACCATTCCCGGCGCCCGATG 1088502 24 100.0 42 ........................ GCTTCGTTTTGCCTTAGCAATAAGGCTGTAGCACTTTGTTCC 1088436 24 100.0 38 ........................ ATCCATTTCGTGAATAATGCCTTGTCTTCCACGTCAAG 1088374 24 100.0 40 ........................ GAACACACGCCTTTGCCCAGGCATGTGATAGCCTCGTACG 1088310 24 100.0 40 ........................ TTTTCTACTCAAAATTGTTGAGTAGAAAATCAAAAGACAA 1088246 24 100.0 41 ........................ ATTTCTCTGTTGGCTGTAGGTTTTGAATTTCCTTATCTGTA 1088181 24 100.0 40 ........................ TTAAAACCTCAATTTCTCTTGCGCCGCTTTCCAGAAGCAA 1088117 24 100.0 40 ........................ ACTTTACGTATTTTATCGTATGAGAAAGAGAAGAGAAAAA 1088053 24 100.0 40 ........................ TATGTATTAGCCATTTGATTTTGTAAAGCAGTTCCTGCTT 1087989 24 100.0 40 ........................ TAACGCCATCCTTGTATCATGACTATATCATTATGGAGCG 1087925 24 100.0 39 ........................ AGATGAGTGACCTAATACGTCTGATATTCGCCATGATAA 1087862 24 100.0 40 ........................ TAGGATTGCGTCCTACCTGAATGCCGTAACCTTTCAGGTG 1087798 24 100.0 39 ........................ CTCTCATGAATTTCCCCACATAGGGAGCACGTCTTAGAA 1087735 24 100.0 39 ........................ AAGCCAGAATATCTTAAGATAACACCTAAGATGTTAAAT 1087672 24 100.0 38 ........................ GAATACCTCTCCAATCAAAAGCCAACGTCCCACTGAGG 1087610 24 100.0 43 ........................ CTAGATGAGCAGTACAAGGAGGCAAGGCAAAAGATTGGTCCGT 1087543 24 100.0 42 ........................ AGTTCTACCGCTAGGTGCAAAGGGGTGTAACCATCAGGGAAG 1087477 24 100.0 37 ........................ CTACCCTCCCATCCACCTTTTTCATGAGGTTGAGAGG 1087416 24 100.0 41 ........................ TTCTAGTAATGTGGAGCGGACATGGATTTCATCTATTTTAC 1087351 24 100.0 40 ........................ AACCCCTGACCGAACTCCCTAGCCAATTTCATTAGATCGA 1087287 24 100.0 36 ........................ TCTCTTCCTTAACCATCTTCTCGATGGCTCTTCTGA 1087227 24 100.0 39 ........................ ACATGAGCGGGACGACCATCACCCCTGGGTCGTGTCCGT 1087164 24 100.0 36 ........................ TGAACTCATCAAACTCTTTCTCTTTGCCGTAAAGCT 1087104 24 100.0 39 ........................ AATGCAGGGACCGCTTTCCAGTACGATTCTGCAACAGTT 1087041 24 100.0 42 ........................ TGGTTAAATTCTGCATTCAATTTTTATCAAAATCTAGCATGT 1086975 24 100.0 40 ........................ TTGAGATTCATGATTGCAATGACGTCACGGTCGTTTTCAT 1086911 24 100.0 42 ........................ CAAGTTGAGCCAGGACCTCCTCAACTTCTTCCTCTAGGGTAT 1086845 24 100.0 41 ........................ TCTCAAGAAGAAGTTAGAGTCTCAGCCAGAGACTCAGACCG 1086780 24 100.0 40 ........................ TGAATCATGGAGAAGAAAATTTGAGAAAGGAAAAGCAAAA 1086716 24 100.0 41 ........................ GAACCTACTGGCAACTACATGAAGATTAAAGCCAGCAGACT 1086651 24 100.0 40 ........................ TACTGTGGGCCGGTGCGACCCACGGACTCAATACGGTTAG 1086587 24 100.0 42 ........................ AGATCGAGATGATTTTTTGAGAAAAATTCTAACTAAATATAA 1086521 24 100.0 38 ........................ TTTACATTCAAGACTTATTCATGGTAGATATAGCGAAG 1086459 24 100.0 40 ........................ AATATGACAGAATAATAAGTGTTGCAAAAGACTGTATGCA 1086395 24 100.0 41 ........................ TCCTTGACGGAAGGGGTATTTCACCCCCTTTGAACCCCCAT 1086330 24 100.0 40 ........................ TAATGTTCTTAGTTAATTGTTCTTTTCCAATTATCTTAAA 1086266 24 100.0 39 ........................ GGGTCAATGCAGTAATATTAGGAGGAATACCACAAGCTG 1086203 24 100.0 40 ........................ TTAAGGTGATTGCAGGGTTATATACTACCCTTATTCTCTT 1086139 24 100.0 41 ........................ ATGTAATTAATTTAAACTATGAAGGAGAGTTGGTTTATTCA 1086074 24 100.0 39 ........................ AGGTGGATATGAAGTTGTGTAAGTCATGAAAGCTAAAGT 1086011 24 100.0 42 ........................ AAGACTGGACCTCCTCTCCTCCCTAACCCTCTGGACTTGTCT 1085945 24 100.0 42 ........................ AACTAAAGAGAAATGACTACGTCAAGAAGGAGGTCCAGAGCG 1085879 24 100.0 42 ........................ TTTCTTATTATACCCTCATTACCAGTAAGAGCTACTCCTTGT 1085813 24 100.0 36 ........................ TCCCAAACTGATGAAGAATCCCTTGTCCTTTATTCC 1085753 24 100.0 40 ........................ ATTACTACTTTCTCTTACGTCGTTCCTTAAGAAATAGTAA 1085689 24 100.0 41 ........................ GAAAAGAAGCTTCCTACTCCTCCTATTGCATTTTTTACGCC 1085624 24 100.0 43 ........................ AGTAGGACAGCAGCTCCCTGCTAGAGTGGGAGAACTTCAGGTA 1085557 24 100.0 39 ........................ AGGCAAAGTACTTGGACTTCTTTGATGTAGACATGTCCA 1085494 24 100.0 40 ........................ TCAATATCTCTACCATCATATTAAGGACATAATTGACCAT 1085430 24 100.0 38 ........................ CACCGAACTTTTCAAGATTCGAACCCGTAGTCGTATTG 1085368 24 100.0 40 ........................ ACTCCATCAGGACCCTCAAGGATGAGACCAACACTCATTG 1085304 24 100.0 40 ........................ TTACCGGTTCACAGTATTCCTCTAGTTTCGTTCCGGTTAT 1085240 24 100.0 43 ........................ TCAGTTTGCAAGCAGACTAGGTTGTGATGTATTATGGTCCTTT 1085173 24 100.0 44 ........................ ACAGGGACTTCAGGCAGTACGCTCTACATCACGGAGAAGGACGT 1085105 24 100.0 38 ........................ ATTCACGAAACGTTTAATTGTATAACCGCAAAAAAAGA 1085043 24 100.0 39 ........................ TTTTTGGAAGCGTAAGTGATCAATGCATATCTTAACGAG 1084980 24 100.0 41 ........................ GTTCGAAAACCCTAGTCCAGCAGGGCAGGCTGGACAGTTGG 1084915 24 100.0 38 ........................ TCTGAGAATTAGACCTGCAACGAAAAGGCTGATCGTAA 1084853 24 100.0 40 ........................ GCTAAGATATCTTGAGTGACTACCTTGAGAGCGTCATATG 1084789 24 100.0 39 ........................ GTAATAATATATTTACATTCAGGGAACCTTTGGACCCCG 1084726 24 100.0 43 ........................ TTAATGAAGTTGTATCCTCAAACTCATAGGGGACCACTATGGG 1084659 24 100.0 42 ........................ GTCAAACTCTTTCTAACCCCCCGCTCACGGGGGAAAAATTCG 1084593 24 100.0 39 ........................ TCGTCCTCGACCAACCGCTCTATCCTCTCCGCGTCGAGA 1084530 24 100.0 45 ........................ TACAGTGATGAGTATCTTGATGAGTGTTTTGATGAGGGGGATGAT 1084461 24 100.0 41 ........................ GTACCTAATCTGAACTCTACACGGGCTTCCCCCACTAACTT 1084396 24 95.8 40 ................A....... TTCCCGCGTTGAAGAATATTCCTTCTCAACTTGTCATATA 1084332 24 100.0 39 ........................ TTCCTTCCCCAAGTTCGTTATCCCCACAAACAACACTTG 1084269 24 100.0 39 ........................ GGTACATGTCCTCGTCTTCGGGTTCAGATTCACACAACA 1084206 24 100.0 40 ........................ ATAGTTTCGAACATACTACTAGTGATCAGTGGTTTATGAC 1084142 24 100.0 40 ........................ AGATTAAGATAAATTAGAGCGACTTCGTAGTCTGCATGAA 1084078 24 100.0 41 ........................ TTTCACCATCTCGTTGTAACTCGTGAACCCAACGGTCCTAA 1084013 24 100.0 43 ........................ AAAGAAAAAAAGATCAATTACAAACTACATAAGACGAAAATAT 1083946 24 100.0 40 ........................ TAATCCCAGGGCCTTTCGGTCTTTGACTCCACATCTTCAT 1083882 24 100.0 40 ........................ TAACGATTGGAACTGAGCCGTCATCAGATACGAAGGCTTT 1083818 24 100.0 41 ........................ TAACTTTCACGATATACTCGCGTCATCCAATAACCGTATAA 1083753 24 100.0 41 ........................ TTCCCTTATTATTTTGTTCCACTCTTCTCCAGTAATTTGAT 1083688 24 95.8 39 .............G.......... TCATTTTTTGGTTTTGTATTTCTACTGTAACTTCAATTA 1083625 24 95.8 40 .............G.......... CTCGTGGTCTCAACTAAGGGTGGATCGGCTTCAGTGACCG 1083561 24 100.0 39 ........................ AGTACTTTACTTTGTGAATGGAGGAACATGGAAAGTAAG 1083498 24 100.0 39 ........................ ATTCCAAGAAGTTATCAAACAATTCCGTTTGTGAACTGT 1083435 24 100.0 40 ........................ CCTCGTCTGGAATCACTAAATCTTGCTCGTCAATTATTGA 1083371 24 100.0 42 ........................ TCAAACATGAGTCTTGTCAAAACTTTCACGGCACCGAGTGGA 1083305 24 100.0 39 ........................ CCTGCTCCTCCTGATCCATTCGCTGACGATGTACCTGGA 1083242 24 95.8 39 .............G.......... CTTGATACACCAATCACAGTGAGTAGTAATACACCGATG 1083179 24 91.7 40 .C...........G.......... GGAGCAAACGGGCAAAACGGAGCCGTGGTGGTAATCGCAT 1083115 24 95.8 39 .............G.......... TCTTTATTGCTATCTGGATTGATAGTTTTCCGTAGAACT 1083052 24 95.8 39 .............G.......... CTAATAACTGACTCTCTATCACCTTGACCATTTTTTGAA 1082989 24 95.8 42 .............G.......... AGACTGTTTTCCAATTCATTATGATAACCTTAATGAATCACG 1082923 24 95.8 40 .............G.......... AATTTTTTCTCTAACTTTCTAAGTAAAGCCTTATCATGTT 1082859 24 95.8 40 .............G.......... ATGAAAAGAATAGGTAGATCACTTTTTGGCATCATTTGAT 1082795 24 95.8 41 .............G.......... TCTAAAAATTCAATCTTCTTTTCAAGTATACTTTTTCTTCT 1082730 24 95.8 44 .............G.......... CTTCTGCTCGGTATCGTCTAAGGCAGGATTCGGTGAATCCTCAC 1082662 24 95.8 39 .............G.......... TTCGACTCGATTAGCTTCCTTACCTCTGCCAATTTCAGC 1082599 24 91.7 39 .............G.......G.. AGAAGGGTTCTGAGAAATCCCTGTAATCATTAGAAGTAA 1082536 24 95.8 40 .............G.......... AATTGCTCAAAGACTTTTTGGAGTTTTAGGTTTTGGGTCT 1082472 24 95.8 40 .............G.......... AATTGAACTAGGGCGAGAATGCCCAATATTATACCTATTA 1082408 24 91.7 41 C............G.......... TATGCGTTTTTATTACATTTTGATAGGCCGTGTCAAAATCA 1082343 24 95.8 38 .............G.......... TCACCTTCAACTGCCGAGACCATGCAGTGGTATAGAAT 1082281 24 91.7 0 .........T......A....... | ========== ====== ====== ====== ======================== ============================================= ================== 151 24 99.4 40 GTTAATCTCCTATAGAGTTGAAAG # Left flank : ATAACTCCAACCCCTGAGCTCCTCCTCAATCGGGTCCGAGGCCCTATACGAGTGGAGGAGCCTGAGTTGTCTCGTAATCTGCGACCTCATGGGTTTATGTTGGTTGGGAATCTAAAATTCATTCAAACGTGGGGGTTGAGAGACTTCCCGTGCAGTGGCGGGATTGGAGTGGGGGTGGACGGTGTGTGGGATGGGCTGATCCCTAGGAAGACCGGGACAGAGGGGAGTTGATCGTGAAGTTTAGGGCGTGAAATGATACAATTTTAGTTTGATGGGAGTAAAATATTGATTCCCTACTATAGTCCTTGAGTTAGGCTGTCCTACTATCGTGACCAGGTACGTCGTTAAAGGTATCTCATTACATTTATAGAGAATACGTTAGTGTCCCGGGAGTTGTAGGGATCTGACGAGATCTGATAAAAATTGTAAGACAATGAGACAGAAAAGATTATATAAAGGAAGAAGATAGATAATGAATAGAAGTAATATAAAAGGTATCA # Right flank : AATCACACGTTCTGATATCGGAAAGTTTACCTTTTTTACTCCCTCCCAATTATTCCCTGTGACATGCCTCATAACTCCCATCGGGTTCGACGAAAAGTTCATCGTGAGAAGTTTCCTTCGGCACGGCAAATCGAGGATCCAGGAGGTTCTCCTGGTTAAACCCTCCGCGAAAAACGAGAAGACGGAGATCGCAATCTCAAACCTGATGAAACTCCTGTCCGAGGCCTCGACCCCCCTCCAGACCCTTGAGATCAATCACGACGATTTCGTCTCCTCAGTCTCTAGAATAATGTCCTGGGTTAAGAGGTCGACTCACTCGGACTACCTCCTCAACCTATCCAGTGGAATGAGAATAGTCGACCTTGAGATCCTTACTGCCTTCCTTCTCCTCCAGATTGACGCTGAGGTTGAGGTTGAGACCGAGACCCTTCAGGGGCTCGTGACTTTCAGGGTGAAGGACCTCATCCCATATCAACTTGAGGAGAGCGACCTCAAGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1097329-1100891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012175.1 Metallosphaera sedula strain ARS120-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1097329 24 100.0 41 ........................ AAGGCGAAATGCAGAAGATGTAGTAGCAAAGACAGCTGTGA 1097394 24 100.0 40 ........................ CAACTCTCATGATTATAATCCCTCCATTTTAAAATGTATT 1097458 24 100.0 40 ........................ AAGTTTACTTCAGTTAATGAGCAAGTCAGCGCAGTGCTAA 1097522 24 100.0 39 ........................ TTATATTTACGGGTAAGACGGCGTTAACGAAGCGTTAGG 1097585 24 100.0 42 ........................ AGTTTAAACGTTACAACTCTCGTTTCCAAACACCTCGTTTGT 1097651 24 100.0 40 ........................ AAAACGAGACCTTTGGCTAAATAAACCGCACCATAGATAT 1097715 24 100.0 42 ........................ CTATGAAATTGTCGCATTCGTATGCAAAATATTTCTGGATCT 1097781 24 100.0 39 ........................ TACATATCCTTCAATTGTGATCTAGCGTATGCTGGTAGT 1097844 24 100.0 40 ........................ ATTTGGATTTTGATAATTTTCTTTTCTTTGTCATAATAAT 1097908 24 100.0 42 ........................ TATAGTTAAGTCATTTTTTCTTCTTGTGGTGGTATTACCTAT 1097974 24 100.0 40 ........................ TACCAATTTCTGCTAATAACGTGAACGTACTCTCGCTGAG 1098038 24 100.0 37 ........................ TAACTTATCCCCTACATGATTGCGAAAAAACAACAAT 1098099 24 100.0 40 ........................ TGTTTTTAAGGACCTGGAGGCAGTCCGCCATTTACCCCAC 1098163 24 100.0 39 ........................ TGAGAACAGCTGTCTTCACTGCTGACCATCGAGCGACCT 1098226 24 100.0 40 ........................ TTTTCTTTCTCATACATTACTCTTATTAGTTTACTAACAA 1098290 24 100.0 41 ........................ CTTCTTGTTCTTCTCTCTGCTTTACGCCTTCTTGTTCTTCC 1098355 24 100.0 41 ........................ TCTGTACGTGGGTCAATAAATGTCACAATCGCGTACTTCTT 1098420 24 100.0 39 ........................ ATAATAATCAACGAGGCAAACTCCATGTTCTACAAACCA 1098483 24 100.0 37 ........................ ACTAGGCAAACGATACTGAGACACAGCGGGACTGCAG 1098544 24 100.0 42 ........................ TTGGAAACACTCCGTATCAATCCTTTAGACTGCAACTCCTCA 1098610 24 100.0 40 ........................ AACATTAGTGTAAAGCCTGCAGCGTTTGCTGGAAGCACGG 1098674 24 100.0 44 ........................ TCTCGTCCTTAAATTTCAAAACTTCCATGTAGCTCGCCCCCTCT 1098742 24 100.0 40 ........................ CTTATGTACACACCACCTGAGCTAAGGAGTGTCTTAATCT 1098806 24 100.0 41 ........................ AAATGGGACGATGAGGGTGTTCAACAGATACAACACCACAG 1098871 24 100.0 44 ........................ ATTATATATAATATATGAATAATAGCCCCCGTGCTTCGCGCCTT 1098939 24 100.0 44 ........................ TCTTTTGCACTATCCATTCCGACCACATCTCTCGGCTTCGATAC 1099007 24 100.0 40 ........................ TTGACGACGTGCTTACTCTTCTTTCCAGTTCTTGTTACTT 1099071 24 100.0 43 ........................ TTATCGATAAAATCGTAAACGATTTGTTGCCTTATTACGTGAA 1099138 24 100.0 42 ........................ ACACCTCTACTAACTTTACCAAAGCCTATCATAGTCCCAACG 1099204 24 100.0 38 ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 1099266 24 100.0 42 ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 1099332 24 100.0 45 ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 1099401 24 100.0 44 ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCACGTT 1099469 24 100.0 40 ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 1099533 24 100.0 41 ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 1099598 24 100.0 41 ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 1099663 24 100.0 39 ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 1099726 24 100.0 39 ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 1099789 24 95.8 40 .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 1099853 24 95.8 40 .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 1099917 24 95.8 41 .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 1099982 24 95.8 40 .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 1100046 24 79.2 32 .............G.....TTC.C GAGGATGATTATAAGCTCAGGGAGAAGATTGT 1100102 24 95.8 38 .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 1100164 24 95.8 41 .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 1100229 24 95.8 39 .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 1100292 24 95.8 37 .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 1100353 24 95.8 40 .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 1100417 24 95.8 41 .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 1100482 24 95.8 38 .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 1100544 24 91.7 40 .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 1100608 24 95.8 41 .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 1100673 24 95.8 41 .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 1100738 24 95.8 40 .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 1100802 24 95.8 42 .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 1100868 24 91.7 0 G............G.......... | ========== ====== ====== ====== ======================== ============================================= ================== 56 24 98.2 40 CTTAATCTCCTATAGAGTTGAAAG # Left flank : TTTCACAATGTTTGGACTGATGAAAGGGTGATATCACCTCCGCACGAAGGGCATGAGTGGTCCCTAGTCCTTAGTACCAGATTCCTCTAAAACTAGTTTAAGTCAGGACATAAACCTCCGTGACTCCTTATGGTAGACCCACATTCGTTAGCTTATCCTCACCCTTTGCATCTTGCGCCCATCTCGCGTCTGAAAATAAGTCTTATATGATCGACCTTAGTATCCTGTGAACCTGGCATGAGCAGATCCATGTATTAATTGTGTCATTAAAAATTTATCTGAAAGTCTCTTCCCGGGAGCCGTCATGAAATGACGCTGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAGATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTTGGGGAGAAAATGGTAGATGTGTTGAAGAACACAAAAAGTTTCA # Right flank : GATTACACTAAATACTACGTAATATGAATAGGTACTGTGAGACGAGAGTGGACTTTTACCTTTGCGGACGGTGTTAAATTTCAGAATCAGTATCCTCTACTACGAAACAAGCCCGAAAAATTACCCACCATCTTGAGGCCCCGTTCATTACATTGATTCTTGGATCTCGTGAGATAACAACTCGTTAAGTTTCCTAGGTCACGATTCACTCAAACAAGAAAACACGTTCATTATTTCCACTTCCGGTATCAAGAGGACATCTTGAAATTGAAGTGACCTAACTCTCCTAAACATGAGGAAAGACCAGGGAACGCAGAGGTTTCCACATCACGGGATCTGGTTATCCTCTCGATATCTTACCCGTCCTCACCCCCTCTCGCCTTAAATACCTCTGAAAGTACTTTACCCCATGGAAATCGTAAAGGCCAGCCTTACCTTGATTCCCACAAGGGACGTGATCCTACCGCCGGTGACCTCGAAAGTCCTGAAGTACCTTATCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : CTTAATCTCCTATGGAGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1104343-1114688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012175.1 Metallosphaera sedula strain ARS120-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1104343 24 100.0 40 ........................ TCTCAATCTGTAGGCCAAGCCACTATTATCATAACTCCAC 1104407 24 100.0 41 ........................ TGAATGCAAGCCTGTCGTACATTACTATTCTACCTTGTTTG 1104472 24 100.0 42 ........................ TTTGTCTGTTTCGATTGGAATAATTTCAGCGTTACCATAAAC 1104538 24 100.0 39 ........................ TACCTGTATGACAATTCGCTAAAAATTTAAACTATCTAC 1104601 24 100.0 39 ........................ TCATTTCCATTTCTTTCAATTTATCAACTATTAACCTAA 1104664 24 100.0 42 ........................ GAGGAAAAGAAGGCTAACGCATTAAAGGCGTGGCATTTAGGG 1104730 24 100.0 39 ........................ GACCCATATTTAGGAGTTATGTCAGCTATATCCAAGCAT 1104793 24 100.0 41 ........................ TCTTGATTTCCATGTCTATCCCCTGCGCATATCTCATATCA 1104858 24 100.0 39 ........................ CATGAGCTGTCCCTCCGATAAGATCATATTTGATGCAGA 1104921 24 100.0 40 ........................ TGAAATAACCGCCGACATCCAACGCTGGAAATTTATATCT 1104985 24 100.0 40 ........................ AATCTTAAACCGCAACCTTTTATAAAATCTTCAACTGTAA 1105049 24 100.0 40 ........................ CCTATAACCTAATAGCATAATATTTACTATGTCCCTCCAT 1105113 24 100.0 39 ........................ TGCTCACCCTCTTCAGTTTCTGCGCCTTCTCCCTCACCG 1105176 24 100.0 40 ........................ TTGATATTTGAGTGCCTGCGCAAATTCCTCAAACAAATCT 1105240 24 100.0 40 ........................ TCTTTAGTCGCTATAATGTCGGGTAATGGTTGCTTACCAG 1105304 24 100.0 46 ........................ TCTGATTCTGATACCTCCTCTTCGCTCCCTTCTTGTTCACCTTCTT 1105374 24 100.0 39 ........................ CTTTTTTGCAACCTAGAAAGCCTTGTTGCGAAATATGGC 1105437 24 100.0 38 ........................ ATTGCTTCTACTTCTGCTGGCATTTTTTTCCACTAAAA 1105499 24 100.0 41 ........................ GCAATATTGGATAGGATTCATATCATCCAAGTTGCAATAAA 1105564 24 100.0 39 ........................ GCAATCATTGCGAAAATAACGGGGCATAAACGCCTGGAC 1105627 24 100.0 41 ........................ TAGGTAGAAGGCAGAAGGAAGTTTTAGCTTCGATATTGGAA 1105692 24 100.0 41 ........................ CGTTTCTCTAATCTCGCCAACCTAGTTGCGAAATATGGCTG 1105757 24 100.0 38 ........................ ATATTTCGTCGCTATATCGCCCAGAAGACGTCTGATAT T [1105780] 1105820 24 100.0 40 ........................ GTTCACGAGTAAAACTGTATAAGAGTGAGGTAACAAATCT 1105884 24 100.0 40 ........................ AAAGTGAAAGTGATGCTGGAGGTGAGGGACAGACTGGGAG 1105948 24 100.0 39 ........................ ATTTGGATCTTGAGAATTTTCTTTTCTTTGTCATAATAA 1106011 24 100.0 43 ........................ AAGGCGTATAACAAAACGGCGTATGTCATATGTTCTGCTTCTA 1106078 24 100.0 39 ........................ AGAGAGGGCTTCACTTACAAGTAAATCAGCACACCTTAT 1106141 24 100.0 40 ........................ GAGAAGTACCCGGGCGTATCCAGGCTAAGCCAGTTATCAA 1106205 24 100.0 40 ........................ TTTGCCATGGAAGAAGCGAAATGTCAGTGTTGGTAGCTCC 1106269 24 100.0 42 ........................ GAATAGTAAGTAAATCATCACCTGCAATTATCGTGTATTTTT 1106335 24 100.0 35 ........................ ATATAACGAAAGAGCGTTCACAAAAGCGTTAGTAG 1106394 24 100.0 37 ........................ ATTGCTATAAACCACATCATGGCTCCTAGCATCAACG 1106455 24 100.0 40 ........................ TACAATCTTATCAACTATGTCTTCCAAAAATGGTGGTAGA 1106519 24 100.0 41 ........................ CCAAAAATCGAATTCAAGGACCAAAACGTAAAACCACCTGG 1106584 24 100.0 37 ........................ ATGATGTTCTCATTGTATTTGTTGAGATCATGTTTAA T [1106607] 1106646 24 100.0 40 ........................ GACACGGCTTTGTAAACAGAGAACCCAGGCAGAACAGATA 1106710 24 100.0 40 ........................ ATACCGGTGTCCATACAGCCAATACCCCCAACACCGCCAC 1106774 24 100.0 42 ........................ TAATTATATAAGCCGAATTGATGTAAATAAGACAAGATGACT 1106840 24 100.0 39 ........................ CTTGTTTTTGTTCTTTTTCTTTGTAATCTTCTATTCTTA 1106903 24 100.0 39 ........................ TCATGAATCAGTTTGAAAGAAGAGAAGATTGGTTAAATG 1106966 24 100.0 39 ........................ GGTTTTGTCTCTTTTTCTGGCTTTCCCGCCAGAATCTTT 1107029 24 100.0 41 ........................ ATTTCGCAATTCATTTCGAATTGTTTCAATTCACTTCAAAT 1107094 24 100.0 41 ........................ CTTTCTTCTTCTATTCCTTATCTTTTCCTTCTTTTCACTAT 1107159 24 100.0 41 ........................ CTTATTTCAGAGGATCTAATAGACGAAGGCGGAATCTTTCT 1107224 24 100.0 41 ........................ CTGGCATTACCCAGGCTTGGCGACACACCAGAAGACAGACT 1107289 24 100.0 41 ........................ GTTTTTGTTGTTTCGAAGAGAATTGGCGGGGCGCTGTAATT 1107354 24 100.0 39 ........................ GTGGGAACAGCGGTGCTATTCATGACCCCTCGCCCAGGT 1107417 24 100.0 44 ........................ AGACTTTATTTCCAGATTTTTCTATATTTATCATTCCGTTTGAT 1107485 24 100.0 40 ........................ GAGCACTCTGGGGGATACCCCCCCGACCCCCTACTGCTAA 1107549 24 100.0 40 ........................ TGAGACCGGGACACCGCCGAAATTAAATCCGGCAACGCCA 1107613 24 100.0 40 ........................ TCTTCTTTGTCCATCTGTATATCCCAATCACGCCATCTGT 1107677 24 100.0 41 ........................ ACTACATATGACGCCGTGGATTGCAGATCTGCTATATTCTT 1107742 24 100.0 40 ........................ TCCTCTATCACGTCATCTATAGCCACACACTTTTGAGCGT 1107806 24 100.0 39 ........................ ATGGATAAAGACGAATTGAAAGAAATTATTAAGAATTTA 1107869 24 100.0 43 ........................ TACTTTTAATCCAGCTTGTCAATGGATGCAGAATTAGAGAGGC 1107936 24 100.0 39 ........................ CGTGGGGCTCGCTCTAACTTGTAACGACACATGTTCCTA 1107999 24 100.0 44 ........................ CCTGAGCTAAGGAGTGTCTTAATCTTATCGAAGTCGTCTGGCTT 1108067 24 100.0 43 ........................ CTTCGCCGTATAACGATCCTACAACAATAATCACTGATTTTGA 1108134 24 100.0 39 ........................ GTAATGAAAGTAATGTCTTTTCTCATACGAAAAGACCAA 1108197 24 100.0 41 ........................ AGATGATGCACTGGCAGAGGCGACAAGAGAAAAACCAGGCT 1108262 24 100.0 39 ........................ CAATGAATTCAGAAAACAGCTGTTCATCCTGGTTCTCAG 1108325 24 100.0 38 ........................ ACAAGGACGTTTTCGTGATCCAGGTGAGCGAATACACA 1108387 24 100.0 38 ........................ AGCAATAATTTAATTGCACTATTTTTAACTGTGCATGA 1108449 24 100.0 39 ........................ TTCACTGTCTACACATAAGTATAAGGGGCTTCGCCCCTT 1108512 24 100.0 40 ........................ ATAATTCGTTTCTGTATTTGGCGTCAAATTTATTTTTAAT C [1108535] 1108577 24 100.0 44 ........................ ATTTGAAATAAGACAAATCAGTGCAGAAGAGGCAAGGAAACTAG 1108645 24 100.0 42 ........................ AGATACCATTTTTTCTCTTGTTTAAACGTATCTACGAACCAG 1108711 24 100.0 41 ........................ ACCCCGCCAATCAGTGCGTTGATGTTCGCTGGCTTCATATC 1108776 24 100.0 41 ........................ ATATATTATATTATGAATTATACCACACACTTCTTTTTCGC T [1108799] 1108842 24 100.0 41 ........................ AGAAACGAATTGTTAGTTTACTTATCACGCCTTCATTCCCA 1108907 24 100.0 41 ........................ ATATCCACCCTTCTCACCAAAAGAATAATACAAAAATTTAA 1108972 24 100.0 43 ........................ TTGTCAACAGTTTCCGATAAGTCGTGAAGTTCATGTCATTTAA 1109039 24 100.0 51 ........................ ATTCTAGCTCGAATTCTGTATCTGAAATTTTACTTACTTTTTTGAACGACA 1109114 24 100.0 40 ........................ ATTATTACTACTATATCATCCGGATTCATTTTCTATCCCG 1109178 24 100.0 35 ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 1109237 24 100.0 40 ........................ ATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG T [1109260] 1109302 24 100.0 40 ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 1109366 24 100.0 39 ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 1109429 24 100.0 43 ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 1109496 24 100.0 40 ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 1109560 24 100.0 39 ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 1109623 24 100.0 41 ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 1109688 24 100.0 39 ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 1109751 24 100.0 40 ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 1109815 24 100.0 41 ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 1109880 24 100.0 39 ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 1109943 24 100.0 40 ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 1110007 24 100.0 41 ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 1110072 24 100.0 40 ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 1110136 24 100.0 39 ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 1110199 24 100.0 39 ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 1110262 24 100.0 43 ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 1110329 24 100.0 39 ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 1110392 24 100.0 43 ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 1110459 24 100.0 35 ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 1110518 24 100.0 38 ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 1110580 24 100.0 42 ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 1110646 24 100.0 38 ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 1110708 24 100.0 40 ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 1110772 24 100.0 39 ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 1110835 24 100.0 40 ........................ ATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA T [1110858] 1110900 24 100.0 40 ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 1110964 24 100.0 37 ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 1111025 24 100.0 38 ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 1111087 24 100.0 39 ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 1111150 24 100.0 39 ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 1111213 24 100.0 37 ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 1111274 24 100.0 40 ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 1111338 24 100.0 38 ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 1111400 24 100.0 40 ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 1111464 24 100.0 38 ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 1111526 24 100.0 41 ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 1111591 24 100.0 40 ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 1111655 24 100.0 41 ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 1111720 24 100.0 43 ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 1111787 24 100.0 41 ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 1111852 24 100.0 43 ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 1111919 24 100.0 40 ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 1111983 24 100.0 39 ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 1112046 24 100.0 39 ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 1112109 24 100.0 39 ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 1112172 24 100.0 40 ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 1112236 24 100.0 41 ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 1112301 24 95.8 38 .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 1112363 24 100.0 43 ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 1112430 24 100.0 37 ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 1112491 24 100.0 40 ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 1112555 24 95.8 43 ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 1112622 24 100.0 39 ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 1112685 24 100.0 41 ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 1112750 24 95.8 39 .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 1112813 24 100.0 39 ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 1112876 24 95.8 41 .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 1112941 24 95.8 42 .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 1113007 24 95.8 42 .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 1113073 24 95.8 39 .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 1113136 24 95.8 37 .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 1113197 24 95.8 42 .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 1113263 24 95.8 40 .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 1113327 24 95.8 40 .............G.......... ATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC T [1113350] 1113392 24 100.0 40 ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 1113456 24 100.0 39 ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 1113519 24 100.0 42 ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 1113585 24 100.0 38 ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 1113647 24 100.0 37 ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 1113708 24 100.0 39 ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 1113771 24 100.0 40 ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 1113835 24 100.0 39 ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 1113898 24 100.0 40 ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 1113962 24 100.0 39 ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 1114025 24 100.0 37 ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 1114086 24 100.0 40 ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 1114150 24 100.0 39 ........................ ATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA G [1114172] 1114214 24 95.8 40 .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 1114278 24 95.8 39 .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 1114341 24 95.8 42 .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 1114407 24 95.8 39 .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 1114470 24 95.8 41 .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 1114535 24 95.8 43 .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 1114602 24 95.8 38 .............G.......... ATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA T [1114625] 1114665 24 95.8 0 .............G.......... | ========== ====== ====== ====== ======================== =================================================== ================== 162 24 99.5 40 GTTAATCTTCTATAGAGTTGAAAG # Left flank : CGTCGTATTCCCCGTGAACTCCAACTAATGCATCGCCTCTACACAATTCTTCTACCCACTCCGGGGGAAACTTTGTCGTGAACTCCAACTAATGCATCGCTGCTACTTGACAATATGCTCGTGAGGTTCAAGATGATCATTAAGGCAGTGAACAGGAACCTCGAAATAAGAATTGCTCAGTAAAACTCGTTCTGTAGGACGCGGTTCACTCCTGGAATTTGTAACTTTATAACCACACTATTAAACGCAGCTAATTAATTGTGTAACTAAAAATTTATCTGAAAATCTTTTCCTGGGAGCCATCATGAAAATGCGTCGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAAATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTGTAAGAAATAAGATCATGTTAATCTAGCGGTATAAAGAGTGTCA # Right flank : GTCCTAGTATAGTACTTGAAACTAGGTGACCCTTAGATCGCTTAGTCTTATGTGGAGCTGATGCGTAATGATTGATTACGTAACGCTCTCCCTACGAATATTTCTAATTGACAAACTACACCATTTTTAAGTTCTTCACACTAATGGGACTGAAATCTCATAGACCCTATGCCTGACCTTCCCTAACATGACCTTGATCAATCTTGGAAGAGACTGAAAGAACCCCTTTAAGGGCCTAGGTTCACTCCTCTGTTCCTTTAGAATTGAGAAATACAGTACCACCTTTACCAAGTCTAGCAGATCTCGATTTCATGACTCTAAACTTGATTGGGAAAAAGTTAAGGATGGGGAAAATTTGCTGCTAGCACCTGATTTTCTCTCTATGGTCCAGTGTTGCCCTAGGTTAATGGGGGGTAAATGTGTCCTAGAGTTTTCCTCACGCAGTACGGTGTGAAATTCATGTACAGCAACCAGTCAATTACTGATCCTTAAGGGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 1136624-1136110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012175.1 Metallosphaera sedula strain ARS120-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 1136623 28 92.9 39 .............AT............. TGCCTCCAGAGGTGGGAAGCGTACGCAGAATAGCCCTTC 1136556 28 100.0 37 ............................ AATAGTTGCCCTTCAGGAGACGCCACTAGTTGAATGC 1136491 28 100.0 42 ............................ AAGTACCTCAGAGTTCCGTTCGGTGACATGGCTATGATGTGT 1136421 28 100.0 40 ............................ TTGGTTTTTATGGTCTCAGCTACTCTTAGTGTGTAGAGGT 1136353 28 100.0 39 ............................ ACGTGCAATCAAGTATTGGTTCAGTCGTAACAGGGGAGT 1136286 28 100.0 41 ............................ TCTTCAATTTCTCCGAAATCTTCATCACAATGGACCCCAGT 1136217 28 89.3 52 .......C......G............T GGGATCCCCGCTTCCCACACTCACGACCGGGGGGGGGGTGTAGACGTGTCGT 1136137 28 96.4 0 .......C.................... | ========== ====== ====== ====== ============================ ==================================================== ================== 8 28 97.3 42 TTGTAGAGATCCTTCGAGGGTTTGAAAC # Left flank : CCCTCGAGGAGTACGCTTCCGATCTGCTTCACCTCGAGGAGGAGCTCAAGGCAGATCAGTCAAAGGCCTGGGAGAGATATCTGGGAGGCCTGCTACTGTTCTCATGTCTCATAGACTCAGACAAGCATAGCGCCAGTGACACATCCTTTCTTCCCCAGAATCCCCCTTCACCCTCACTGATTACCGAGTTCATATCCTCGATCAAGAGTAACGATAGGATGGCTGGGATCAGGGAGAAGCTCAACTCCCTTGTCTCGTCTACTCCGGTTAGCCGGACGGTAACCTTGATTGCCCCGAGCGGATCGGGGAAGACGCTGTCCGGCGTTCTAACTGCACTCAAGATGGGGAAGTCGAGGTTGATCTATGCTCTTCCCTACATTAGTATTGTTGAGCAGGTTCACGACGTGCTCTCAAGGACGAGGATGGACCCGCTCAAGTTCTATCATCTATACTAGGGTAAGGTTTTTTAGGGCTGGCTATCAATAACAAATAAGAGCGGT # Right flank : ATGCTTTTAGTTAAACTAGAGAATGGGCTCAGGTGATGAATTACCTGGGCCGACCCATCAAGGGTAGCTTTAGAAGCTGAGCCTAGATCCCTATTTAACTCCTCTTCCTACCAAAATAAGCTTACTAGTTTTCCCTGTGCTCGGTTTTCCCAGTTATGTTCACTTCCTAGCGAACTAGTTTCTAGCATTCTTTAGAGATTAATAAAGCAAAGTTAAAACAATAATATCTCGAAGTCTATCAATAAGTCTGTAGTGATCCTCAAGGTTTAAAACCCTAGAGAGATTAATAGGATAACTAGTCATTGGAGAGCCTGGCATCAAGGCTTATTTTTTGGAAGTCTAAATAGGTGATGGGGCCCCCGGTCTAACTCTCTGCCAACAGCTGCCGGGCCCGGGAAAACTCTTGATTAGGCCCCCGCTTATACGGACCCTCCAGCGTTTTGAAACTATCACATTTTGTTATGCGTCCTTTGCTTCCTTGTCCGTAGATCCTCCCGAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGAGATCCTTCGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1137842-1139329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012175.1 Metallosphaera sedula strain ARS120-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 1137842 28 96.4 39 ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 1137909 28 96.4 39 ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 1137976 28 92.9 39 ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 1138043 28 96.4 41 ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 1138112 28 100.0 41 ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 1138181 28 100.0 39 ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 1138248 28 100.0 39 ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 1138315 28 96.4 39 ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 1138382 28 100.0 40 ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 1138450 28 100.0 40 ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 1138518 28 100.0 43 ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 1138589 28 100.0 39 ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 1138656 28 100.0 41 ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 1138725 28 92.9 218 ......A....................T ACAACCCCCTATGTCAAGCACCGTGTCCATTTCAACCTTTAACCTCTTATTTTCCTGGAATAAACGGAACTAGGTGACTGAGCAAGAGAAAGGAATGATAATGCTTATTTTGGTAGAGACGAATTTCGTGAGGGGGCCTTAGACTGAGTCTCCTCAATGATGGGTCGGGACAGGGTCAAGTCATCACCGGACCCCCGCTTTTCAATTTTGACTCTCGT 1138971 28 78.6 38 ....G.A......C.A.A...C...... TGGGGTTTGGTCGAATTAGTCCCATATGGTAGTTTCAG 1139037 28 78.6 237 .....AA...G.C.........CA.... TCGGATCTTCTCCCTACATGACGTATTCCTGTGACCTTTTCAATCCACCTCACCTCCAATTTGCTGGAATATAGGGAACTAGGGGGACTGAGCATGAGATAGGAATGGTGTCAAACTTATTACGTAAAGGAGGTGATAAAGGGTGGAGGGCCTAAGCTCATAACAAGTCCGATATGGCTCCATGTGTCAGCCGTTCATCATAGGCCCTCTCTCTAATTCTGTCTCTTTCATTATTGT 1139302 28 82.1 0 ..A.G.A....A.....C.......... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 17 28 94.7 63 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Left flank : AGTTCTAGGGAAGATAGTGCCCTCTTGGCGACGTAATATGCGATGAGGGAAGATATCTCAGCGTGACTGGATCGCGGATCCTTACCTCCACGAAGATGTTTCTGAAAGAAGGTCGTGTACTTACCAACGTCGTGGTATGCCCCAGCAATATAGGCTGGGTCGGAGAGCTCCGGACGACTCCCTGAGATGAGCGAAGATGCAGTGGTTCCTACCTCATTAAGGTGGTCCGCGAGGCGCTTGTTGGGATGAGAACATAGATCGTCCGGTGAACATTCCATGGGAAGAGTTAGGGTTAAGGTTAAAAAAGATTATTTTATAGCAGTAATAATTTTCCTATTGAAAAATCGGCAGTGAAAGGGAAGAAGAAAATATATAGAGATAACAATATTATTTTGTACGTGGGTTCACCTCGGCGGTGAAAGGGAAGTTGAGGGTGGTTGATCACTGCCGAATTTGGGGTAAGGTTTTTTAGGGCTGGTTACTAGTAGTAATAATAGCGT # Right flank : CTCGGATCTTGTCTCCATGTGGCATAGGCCAATTACCATTTTAATCTTCAACCCCTCATTTTACTAAGGAAATGGAACTAGAGGGTTGAGCTGAAGAAAGGAGTAGCGTCAAACTCATTGCGTTAAGGAAAGATGAGAAACAGCCCCAGTTCGTAACAAGTTAGTCATGGATCCGTGCCTCGGTGTCCATCACTCTCAGTCTGTCTCTAAAGATCTTGAGGCCTGAAACTAGGACGAATTCCCGAACATTATGTAGGCTATTTGTATTAACTCTCTTCACTCTTCATATGAAGTAACCTTTACCTGGCCTTCAGGTGGAGACTCAAGATTCCGACATATCCCCTCAACAATACCCCTAGTGTAGTCGGCATCTAAGCCTCTGACTTAACCCAGGTAAGAACGGCCACTCTCTCAACTTTGAGACAGTCACAAAAAGGTTTATTTTGTTGCGGGTACCAGCAATTTGCGGGTACCAGCAAATGTTCGTGTACGGAGTTCCC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-2.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGTGATCCTTTGAGGGTTTGAAAC # Alternate repeat : TTGTAGAGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //