Array 1 946645-946311 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026051.1 Proteus mirabilis strain FDAARGOS_67 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 946644 29 100.0 32 ............................. CTTTAGACCATTTAGACAAAGGGGAATTGAGA 946583 29 100.0 32 ............................. AGTGAGTGATTGCTCAGGTTTTTCTGGATACT 946522 29 100.0 32 ............................. GCCTGATGCTGTTGTCTGATGTTCCTTATCCC 946461 29 100.0 32 ............................. GCACATGGGGGTACCGATGCAGAAGAGAACCT 946400 29 100.0 32 ............................. TGACTTTAATTCCGTTTTCTTTTGCTTCATTA 946339 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCATAATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGCCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCTGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 956050-955532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026051.1 Proteus mirabilis strain FDAARGOS_67 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 956049 29 100.0 32 ............................. CTATGGATAACTTTAACACCGATGAGCCATTA 955988 29 100.0 32 ............................. AAATTCATGGTCTTTCTGGTGAAGAGCAGGCT 955927 29 100.0 32 ............................. CGTTCAATGTTACTAATGTTAATCGCTATTTC 955866 29 100.0 32 ............................. TTACTCACCTCGGTATCTACCGCTTCCTGATC 955805 29 100.0 32 ............................. CGGATTTGTTGGGTGAATATTTGTCGATTGTC 955744 29 100.0 33 ............................. CAGTACGTTCCTTTTCATCGTGGGATCTCAATA 955682 29 100.0 32 ............................. GTGTTCGAATACCGCTTGCCCGCTGAACCCCA 955621 29 100.0 32 ............................. ATGACTAGACCAGCACGCGGTGAGCGTAATAA 955560 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAGTTTTGAAAAAGTCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGCTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCAAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAGTTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1716866-1716526 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026051.1 Proteus mirabilis strain FDAARGOS_67 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================== ================== 1716865 25 100.0 38 ......................... AACCCGTACAGGTAGTAACGGTCAGATCACCTATTTAA 1716802 25 100.0 38 ......................... AACCCGTATAGGTAGTAACGGTCAGATCACATATTTAA 1716739 25 92.0 38 .............A..........A CGCCCGTAGAAGTAATAATGGTAATACCATCTACCTAA 1716676 25 80.0 38 .............A..C.CA..C.. TACCCGTACAAATAGTAACGGTGAGACCATCTATCTCA 1716613 25 84.0 38 .............A..C.CA..... AGCTCGCACAGACAGTAATGGTACTACCATCTACAGAG 1716550 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ====================================== ================== 6 25 92.7 38 ATAAAAGTGGTCAGGTTATTGGTTC # Left flank : GCGTTGTGATCACCTATAGCTTAATGACCTTTTTTTTAACCTATCATGGGTAGATAACCGTAAATAAAGGCACGATAACATGCTGATAATAAAATGGAAGGAAGTAAATAAAGTAGGGTTTAACTCATCAGTCTGTTTTGGTGCGAAAGGGGGGACTTGAACCCCCACGTTCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACTCTCGCAAAACACAATATCTTAATAGATAGTCGGCGAATTTTATGCTTTTTAATTTTGGCGTCAATTATTTTTATCAATAGATTATCTTGGAGATAAAAATAAAACAGCGAGAGTTATAATATAAAATAGATAGATTCTATTTTTAGAACTAAGATAAATAATTATGACAAAAACCGATTATGCAGTAGGTTTATGAGGTTTTTTATGAAAAAAATCAATATATTGATTGTTATCTTGTTTGTGATTATATCAAGTAATGTATATGCGGAAATCTACAAAG # Right flank : AAAAAAATGATAATTTCGTTTGAAAATAAAAGTGTCTGCTATTAGATGACTGTTTTCAGTTATAAACAGAAGACCGCCAGTAGTTGAAAAATCAATTACTGGCGGTTTTTATAATAGTGCTGGTGATTACTATTTCTTGGTTGCTTGGTAAACTTTGAATTTACCTGTTGATGCAAGCACTTCATGAGAGCCAAACACGTGATCAAGAATATCTTGATAAGGTAAGAAAACATTGGCAACAATACGCAGTTTACCGCCTTTTTTCAAAAAGTTAGGCGCGAGACGAATAATGTCTTCTGCAGCTTGATAGCTGGTACCTAAGCCATCATGGAAAGGAGGATTAGAGACTATCCAATCATAAGTTTCTTCTACCGCAGAATAGACATTGCTTGCAATAACCCGTCCTTCTAATTCATTAACGTTTAACGTGGCAATACTGGATGAAATAGCGGCTGCATTGACGTCACAGAGTGTGAGTTTTAACATCGGGTTTTTCTTGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAAAGTGGTCAGGTTATTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //