Array 1 17460-16148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSXD01000029.1 Dickeya fangzhongdai strain M005 Contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17459 29 100.0 32 ............................. CGAATCCAGCCTGATTCCGTGAGTGCTGTCCT 17398 29 100.0 32 ............................. AAAATTTCTGAACGCAGCATCAGGAGGACAAA 17337 29 100.0 32 ............................. CCAGTTCGGTTCAACGGTCGTAACTCGAAATG 17276 29 100.0 32 ............................. AGGAATTATCCGTTCCTGCCAGCAGACCAGAT 17215 29 100.0 32 ............................. CACGGGTTGGTGACATAGTTCATTTTGGCGGC 17154 29 100.0 32 ............................. CGTAAACCCCAGCCAATGTAGCCACGCTTTAG 17093 29 100.0 32 ............................. GATATGTTCGACACCCCGGATGTAATACGCAC 17032 29 100.0 32 ............................. GATATTAACGGATACTGATTATGAAACTGCCT 16971 29 93.1 33 ............AG............... GCGAATGTCCGATCTGTGGCCGTCGCGGAAAAC 16909 29 93.1 32 ............AG............... ACCGAGCTGGAATTGCAGGAAATGGACATGCT 16848 29 89.7 32 ............AG.............T. TCCCCGGCGTACCGATCGAAAAACCTCTGCGA 16787 29 93.1 33 ............AG............... CATACCGGGAATGTCAGCGGATGCCCGACCGAA 16725 29 100.0 32 ............................. CGTGAGCAGGACAAAGACTATGGGCGCAGCCT 16664 29 100.0 32 ............................. TTTTCCGTGAAAGCCCGCGACACATACATTAC 16603 29 100.0 32 ............................. ACGCGCAACCGTGCACGCAATCGCGCACATCA 16542 29 100.0 32 ............................. AGTATTTGCACTATTTCGTTTGCACTTGATAG 16481 29 100.0 32 ............................. CCAATGTGTTCGCGGCCGCTGGCACCCGGCAG 16420 29 100.0 32 ............................. CCGACGTCTACAACACCGCCGGTACAGAACGA 16359 29 96.6 32 ............T................ CGCGAAGAGCGTGAGCTGAAAGAGCGCGAGAA 16298 29 93.1 32 ............AG............... AAAGACGGTAATCACATGATGGTCCCGTTGCT 16237 29 93.1 32 ............AA............... GAGGAGCTACAGGAGTCCATCCGCGCCGTGTT 16176 29 86.2 0 ...........AT............CA.. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACCGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAACGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGATCTGGCTGCTGGAGGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAACGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATGCTTTTAGA # Right flank : TTTATTAAGATAGCCTGATCGGCGGCCGGTTACGGAAAAAGCCACTACCCAGGCTTGGGTTAAAACGCGTGCCAGTCGTCATCGCTGCCTGATGCTTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTTGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGTCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGTACGCCATCCACAATCCCCTGGATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 147540-147747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSXD01000027.1 Dickeya fangzhongdai strain M005 Contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147540 28 100.0 32 ............................ ATCAGAAAAAATCTCCTTCTTTAGTCCATCAG 147600 28 100.0 32 ............................ GGAAAAGAAAAAGCCGCGTCAGAGGAAGCCTT 147660 28 100.0 32 ............................ CGACCACTTGGCACGATTGCCACGTGATTACA 147720 28 71.4 0 ............AC.......AA.TCCC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCACCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCCCTTCCTCGCCCGCCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGGTGGTAACGGTCGGCTTTAAAAAAGGGTTTTCGGACAAAAAACATCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACA # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCCGCCACCAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCATGTTGGTGAGCGGGTAACCCAGACTTTTAAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCTGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGATACCAGCGGAATGCCACGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCCTGCTGCGCCAGCCCGAACAGCATACGGCTGTTG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 152974-152583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSXD01000027.1 Dickeya fangzhongdai strain M005 Contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152973 28 100.0 32 ............................ GCCGATGCCGCCGCCCGTGCCGCCGCCTATGC 152913 28 100.0 33 ............................ AGACCATAACGCTCTTGCTCCAACTCACCGTAT 152852 28 96.4 32 ...........T................ ACTGGCGTGCGAATACACCGGGGCTAGTTATG 152792 28 96.4 32 ...........T................ ATGTGCATCGTGAACTCACCGCCGCCGGATTA 152732 28 96.4 32 ...........T................ TCGATTAATAACGTGGCCACCTGTGTAGTTGG 152672 28 100.0 32 ............................ ACACGCCATCATCAGCGATAGCCTGAACCTTC 152612 28 75.0 0 .........T.T........A...ACGG | AA [152586] ========== ====== ====== ====== ============================ ================================= ================== 7 28 94.9 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGATTATACCGCCATCACCGAACCGCTACCGGTGCCGGCGGGCGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGTTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGTCTCTCCAACGGGCAAACGTTTTTATTGTTTGTCGAGCACGGCCCGTTGCAGGATAACCCGGTCGCCGGAGCGTTCTCCAGTTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGATCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATAGCGTTTTTTCTTTAACAATCAGGTGATAATCGATAATTCGCTACA # Right flank : GGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCAGGGAAGCCGCGCAAGCCCTTGCCGCGCCGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAACAGCGAAGGCGAATGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACTCAGCCAGTGGCCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCTTATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 161870-163277 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSXD01000027.1 Dickeya fangzhongdai strain M005 Contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 161870 28 100.0 32 ............................ TGACGGACTGGTGCTATCTGATGATATCCAGC 161930 28 100.0 32 ............................ TCCATCCCTAGCCAGTCATTCACATGCTTCAG 161990 28 100.0 32 ............................ AATGCCGGCATAGCCGGCGCGATGGCGATGTC 162050 28 100.0 32 ............................ TGTCAGCTCGGTTCTGGCGCTCACGGACGAAA 162110 28 100.0 32 ............................ CCGAGTTGCTCAATGACGCGAACGCGCGCCAG 162170 28 100.0 32 ............................ ACGGTGATAATGACGCCGAAAACCATGCCGAG 162230 28 100.0 32 ............................ CGCGGCGTAATTCAGCACCCGGCGTTCGTCGG 162290 28 100.0 32 ............................ CGCCTCTTCTAAAGCCTGCTGTAGGCGATCTT 162350 28 92.9 32 ...........AG............... GAAAAAGCCATGCTAAGCCTTTCACGTGTTGC 162410 28 92.9 32 ...........AG............... ATCAGCTGTTGCAATACAGCTGGGTCATGCAG 162470 28 92.9 32 ...........AG............... TAGGGGAACCGACGTCACCCGCTGAAATGGCG 162530 28 92.9 32 ...........AG............... TCGTAGCAGGGCTTCAGTGTCGCCATCAGGGT 162590 28 92.9 32 ...........AG............... CGTCGCGTAATGCTCACCATGTCGCCGATGTC 162650 28 92.9 32 ...........AG............... TGGATGAATCCACCGGTGAGTTTATCCCGTTG 162710 28 92.9 32 ...........AG............... ATTGAGCTGCCGCGATGCAGAAATGTTTGACC 162770 28 92.9 32 ...........AG............... GGGTGCAGCAGGTTATGCCCACAGAAGGCTGG 162830 28 92.9 32 ...........AG............... GAGCAGGAAAAAGCGCTATACAACGGCCTGGC 162890 28 100.0 32 ............................ GAGCCGCATCCATCGCTACAACCTGCCCGCTG 162950 28 100.0 32 ............................ CGGCCGGCAAAAAGCCCAGTGCTACAGGGAAA 163010 28 100.0 32 ............................ GGGATGAGAGCGGCACTCATGCGCGCATGACC 163070 28 100.0 32 ............................ CAGACGTGATAGCGGATTTCCGTTTTTTACCG 163130 28 100.0 32 ............................ CAACTGGCGGCAGTTCCCAGACGTTAATCCGC 163190 28 100.0 32 ............................ AGTGACTCGCAGCGACGAACGTTGCCGCTCTT 163250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 97.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTAGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTAAAAAACTCGTAATACACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGTATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGGGATACAACGGGTTAGAGTCAACGAGCTACA # Right flank : ACTGAAGCGTTCAGCACTGCCGGGTCGCGGCTGGTTCACTGCCGAGTAGGCAGAGGTTGACGGGGTTACTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCGCGGCAGGGACGCCGCGCAAGCCCGTGCCGTGTTGGGAACACGTCACGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTTGTCGTGCGGGCGATGAAGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCCTTTACCACACCACCATATACTCTCCGCTCTTAATCCGAGAACATCCCTCGGGATATCTCACTCAGAACGACGTCCAGTCGTCATTGCTGCCGACGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCCGCAGACGGCAGCGCGTGGGATAACGCCGCCGACCGGCGGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //