Array 1 85609-86066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000016.1 Nocardia puris strain N-10 NODE_16_length_166614_cov_37.490957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 85609 30 93.3 31 ............................TT TGGCGGGTTCCGCCCAGGTTTGGGTATCTCT 85670 30 96.7 31 .............................G AACAGTCGCACGATGACCGACGAGAATGACC 85731 30 100.0 31 .............................. GTTCGGCCTCACCACGGTCGGCAGCCTCGAC 85792 30 96.7 31 .............................T CATCACGTGACACGCGAGTAAGCTGGTCGTT 85853 30 100.0 31 .............................. CCTCATTGGTGACGATGACGCGCCGCGGACC 85914 30 96.7 31 ............................C. TGGCGACCGGCGCGCACGGAGTGATCCAGGG 85975 30 96.7 31 .............................G AGTGAACGGCGATGCCTGACACCACGACCCG 86036 30 76.7 0 .......T.....T.......CGT...G.G | C [86055] ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : TCCCAGCCGAACCCGCCCCCACCCTCACCCTGATCGAGGTGATGAACCGCGCCAACCTCGACTCCACCCACTCCCTCGACGGCCGCGAAATCACCCTCTCCGGCTTCATCCTGCGCGCCGAACACGGCGACGGCCTCGACCTCGCCCGCGTCGCCATCAGCTGCTGCGTAGCCGACGCCCGCTACGTCCGCCTCCACCTCACCGCCCTCCCCCAACCCCTCCCCGAAGACACCTGGATCGAAGTCCGCGGAACGGTAGTCCCCAACAGCGCCCCCACCGACCCAGACCTGACCCCGACCCTGACAGTCCACGACTTTCGCTTGATCGAGCGACCGGAGAACTCCTACGAACGAATCCGCTGAGTGCGAGAGTCGACCCCATCGAGACTTCGCCAACTCGGCACAATTCACGAACCGCCCCGACGCGCCCTCCCGGAAGCCCGGATCGGAGTAGTGGTCGAAAAATGGGTTACCCACCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : GACGGTACGCAGTCAGTCCGACTCGGATTTGGCGAGTTGGCGCACCACCACGCTCGCGGGGCGGAGGGAGCGGGTGCCGACGGTGAGGCCCGGGGCGATGAGCGCGTCGACGGTGCGGTCTTCGGATGGGTCGGTGGTCGACACCACGTCTGTGGCTTCCATGGTCAGCGAGTCGAACGCTGTTCCGGGGCCCGGGGTGAGGAGGGTGGCGCCGCGGCCGGTGAGGAGGCGCTCGATGCGGGTGGTCACGGCGTCGAAGGCGGCGCGTTCGCGCTCGGATTCGGCGGTGGCGGCGCAGGCCGAAGTGTCGCCGTGGAGGGCGAAGAGCTCCACAACCAAGGGCAGGTCCGCCCCCGCGCGGTCGCGGCGGTCGCGCTCCTTCGCCTCGTCGGCCAGGCGGTCGAGGGTGGCGGCTTGGCGGGTGACCACGCGGGTCAGGTCCTCGACGCGTTCGGCGAGTTGGGCGAGGGTCTGCTCGACGGGATCGGTCATAGGCGCAC # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72039-72742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000023.1 Nocardia puris strain N-10 NODE_23_length_73924_cov_36.407428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 72039 30 100.0 31 .............................. GAACCGTTTTGAGCTGGCAGGCCATGAATTG 72100 30 93.3 31 ............................GT CCCACTCCCGCTTCGAGCGGACCGACCGCAG 72161 30 93.3 31 ............................GC CTTGCGCATCGTTGACACCGATGGTCGTGGC 72222 30 93.3 31 ............................TC GACCTCGACGCCCGCAGCGCCTCCCCGGTCC 72283 30 100.0 31 .............................. ACATCTGGACGCGGCCCGAGCGACTGCTCCG 72344 30 96.7 31 ............................G. CGTAGGTCTTCGCGGCGGTATGGATGTCGGC 72405 30 93.3 31 ............................GT ACGGCAACGAGGCCGCCCACGGCGTGCTGCG 72466 30 93.3 31 ............................GA CGACACCGACCGCCTCGTTCGCCCAGCCCGC 72527 30 96.7 31 ............................T. TCTTCGAATGGCTCTAGTGCGAGAAGTGTCC 72588 30 100.0 30 .............................. AGGGCAGTGGCTGAAGACGGAGGGCGCGCG 72648 29 83.3 31 .....-.....AT............G..G. TTCCCGCGTATGCGGAAGGCGCGACAGCGGA 72708 30 86.7 0 .............CT.C..........A.. | A,T,TCG [72728,72730,72733] ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : CGCACTCGCCCGCGAGGTCGGCCTCACCCCCGACCTCCTCGCCCGCCGTCCCCACGAGGTGAGCGACGGCCAACTCCAGCGCGCCTGCGTCGCGCGCGCCCTCGCCCAGCGCCCCCGCTTCCTCCTCTGCGACGAACCCACCGCCATGCTCGACGCCGCCACCACCGCCGCCATCGCCCGCCTCCTGACCACCCGCGCCACCGCCGGTGACCTCGGCCTTCTCCTGGTGAGCCACGACCGCCCGCTCCTCGACGCCTGCCACGCCCACGTCCACACCCTCACCGCGGGCACCCTCACCACGTGAACGATCCGCCGCACCGCCCCCACCCCACCCCCGGGTACCCTGAACCCGACACGCCTTTCCGCCGGTGCTGAGCAACTGATCCATCGGTGTCTCGGATACGTAACGCCGACGGTCAGGCGTGTCACCTTCACCAACCACCTTCCCGACAGTGGTCGAAAACTTGGTTACCGGCCGGTAGAAGCCCAGGTCAGGAAGT # Right flank : GCCGACGATCCTGAGTGGTCTGCCCTGCATCCGCGCGATCGACAACCTCAGCGCCACGTGCGGAGACCGGGCCCGACATTCGACGGTTCGCGCACGTAAGTCGCTGAGAATACTGTTGTTTCGTAGACCGCCGATCAAATACCCAGCACCCCAACAACTCTCACCGCGTCGTATACCCACCATTGGCGAAGATCGTCTGTCCCGTGATCCATTTCCCGTCGGTGACGAGGAACTCGATCAGCGGGGCGATGTCGGTGATGTCGGTGAGACGCCCGCCGAGGGCCTGGGACTTGTGGAACTCCACGCGCTCCGGAGTCTCCTGCCCGTAGAAGAACGGGGTGTCCATCGGTCCGGGCGCGACGTTGTTCACCGAGATGCCTCGGGATGCGAATTCCTTGGCGGCGGCGCGGGTGAAGTGCTCGACCGGGCTCTTGGCGCCGGCGTAGGTGGAGTACCCGTCGGTGAACGCGGCGAGCAGCGCGGTGAGCACGGTGACGACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 449596-449142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000002.1 Nocardia puris strain N-10 NODE_2_length_510948_cov_39.083325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 449595 30 100.0 31 .............................. CCACGTACATTCGGTCCCGCGACTGCGGCGC 449534 30 93.3 31 ............................TC GGTCCCATCCTGTGATACGAGTCGGATTCGA 449473 30 100.0 31 .............................. CGCAAGCGTTGATCGACGCGAACCCGATACC 449412 30 96.7 31 .............................T CCGAGATCCCCGGCGCGTAAGTGGCCAGCAG 449351 30 96.7 31 ............................G. CCGCCGGGTCGGTGACGGTCGCTTCGGGTTT 449290 30 96.7 31 .............................C TCGTTCCCCCCGGCGACATGTCCGACCCGCT 449229 30 93.3 29 .......................A...T.. CAGTGGTGGTGCCAGAACTCGGGGGTGAA 449170 29 73.3 0 ....-.G...........A.A....CGG.A | ========== ====== ====== ====== ============================== =============================== ================== 8 30 93.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : TCGAGGGCGATCATCGCCATCACGCCCGCGTCGGCCTGCACACCGCCCGCCTCGGTGTCGCCCTCCCACGCGTCCGGTTCCCGCCACGCGGCGACGAGCGCCTTCAGCTGCGCCGGGATCCGAGTGCGCCAGTCGGGGGCGAGGTTCTCGCGCCCACCGGGCGGTGGGGACGCACTGTTGCCCACCGATTCCTTGGTGGCTGCCTGGCGGAACGCCTCGGTCAGGCCGACGACATGATCGAGCAAGTCACCGACGGTCATACCGGCACAGGGCGTCGCTGCATCGAGCTGGTCGTCGCGGATACCAGCGACCACCACCGCCAACTCGTCGGCCGCGGTGTCGAGATCGAAGGGCTGCATGCGGGTCTCCTCCGTGGATGGAACCTTCCACCCATATCGACGCCGCGAGCCTCCCGAATTCATCGGGTGCCGGATCCCGATCCGCATTCTCGAGTGGTCGAAAATGCGGTTACCCACGGGTAGAGTGCCAGGTCAAGAAGT # Right flank : GTCCCGGTTGAACCGTCGATTTACCGCCGGGTGCGGGCAGGAAGATTGGCGTGAGTTCACCCCTGGCGCAACGGGATTCGGTCAATCACCGGGACGGTGGCGTTCAGGACTCGGAGGCGGCTCAGGGAGAGTTGGGCCTGGCCGTTCGAGCCGGCGCGGCCGGCGGTGCCGGTCACCGTGCGCAAGGGACCGTTGTAGATGATCTCGTGTGGGACGCCGGGGTGGCGGGAGAGGGCGAGGACGAGGAGGGCGTCGGCGGCGGCGTGGGAGGTGGTGCGGAGTCCGATCGCTCGGCTGCCGTAGGTTCCTTTGATTTCGACCGCGCGGCCGTCGGCGGCGATCGCGTCGTGGCCGGTGGTGGAGGGAGGTTGGAGGGTGATGTCGAACAAGGCTTCCGCCGCGGCTTCCGCGAGGGCACCGACGAGGTGGCCGTCCGGGGTGAACTTCCGACCCGGGTGGAGCGCTTCGAGTTCGGCGACGATCGCGTGGAGCTGCGAGAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19572-19177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000005.1 Nocardia puris strain N-10 NODE_5_length_475207_cov_37.546725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19571 30 96.7 31 ............................C. GCACCATCGGTTACGAGTGGATGGCGCGCTA 19510 30 96.7 31 ............................T. CCGGGGCGGTGCTGGCGACAAGTCCAGGTGT 19449 30 100.0 31 .............................. CCCGCAGCCTCGTGACGGCCCGCTCCGGCGG 19388 29 93.3 31 .....-.......................T GGACAATGCGGCCGATACTGGGCTAGGGCAT 19328 30 96.7 31 .............................A CCTGGAGGCCGAAGTGCCACGGGTGGGTGAG 19267 30 93.3 31 .C...........................C GGTCCAAGGCCACGAAATGGCCGGGGTGATC 19206 30 83.3 0 .........G................GTCC | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.3 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGACTTGTCATGGCACGCTCCGATGCACGACCTGCTGCGTCGAGCAGTCGCGGAAGGGCTTGGGGAGCAGAGCATTACGGCGCTGATCGAGTTACTGGCCACTTCTCTGGATCGAGAGTCGACTGCACAACTCACCAGTCAGTGAAGTCCGAGATGTCCGCCCGGTGCGGCAGAATGCGCGCTATTGCCGGCGGGGATCCGCGACGTCGAAACCTGTCTGCGTCAGTGCGGCGGATCGACCGGTCGAGCATTCAGCGGTCAGGCGATTAGTCACGGAGGTCGTCCATGTGCGTATCAGTTGCTCGGCCGGGCGAACAGTCAGGATCCCGCAGGCGATCTCGGCTGCCGGTTCGCTAGGACAGGGGCAAGAAGTCGCGCGGACTATCGCCCCACCGTCGCCGTTCACCTACCTCGGCGATGTCGCACGGCACGCCTCCTCCTCGCCGCACTCAGTGGTCGAAAATCTGGTTACCGACCGGTAGAATTCCTGGTCAGGAAGT # Right flank : TTCCCGGAGCAGGCCGGGCACGAGGTGGGTCGACCCCCCGAATCGTGGGATGACCGTGGTTACAGATGATCAGGCCCAGCCGTCGAGACACTCCCACCGGTGAGAGATGTCAGGCTTGTTGCAGCACAAAGAAATACGGCTCCGCCAGACCTCTCAGGTCCATGACTCCCAGCAGTGTCGCCCCGTCCACCCTGCGGAAATGGTCGATGATCGGCAAGTGATCGTAAACCATTGCGGCACTGACAATTCCCCGGTACCCGATGTTCCGGAGACGCGCCGTCGGCCTGTCGGTGCGCAGCGCTGGGCGCAGGACAGGGAGGAGTTTTCGACCGGCTTGGACGGCGGGTAGCGGAATACGCCCTGCCAGGCTCAGAGGTACGCGTCGGGGATCGACCGGAAACAGGTTGCCCGCGTCGTCGGCGAAGACAAGCGGGTGCACGAAATCGGCGCTGTCGAAACGCTTTCCATACCAGCCACTCGCGGTCAGCACGCCGTCGAGG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22554-22343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000005.1 Nocardia puris strain N-10 NODE_5_length_475207_cov_37.546725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22553 29 93.1 31 ........................G...C TCGCCAAGCTGCGTCGGGGCTCGGTAAACAG 22493 29 100.0 32 ............................. GCGTGAGTGTGCACCAGCCATCGCGCCGCCTC 22432 29 86.2 32 .C............T.........GC... GGCTATCCGATCGGCACCGGCTGGTCGGATCA 22371 29 86.2 0 ........T........A....G.....C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTGCTCCCCACGCACGTGGGGATGATCCG # Left flank : CCCAGTCCTCACCGAAGCCCGCGACACCCTGTCCCGTTATTACGCAACAGAACTCGGCGAACCGTTCACCACCGCAGGCCTCTGCTACTACCGCGACGGCCGCGACAGCGTCGCCTGGCACGGCGACACCTTCGGCCGCGGCGCCACCCACGACACCATGGTCGCCATCCTCTCCGTCGGCGCACCCCGCACCCTCGCCCTCCGCCCCCGAGGCGGCGGCCCCAGCCTCCGCTTCCCCGTCGGCCACGGCGACCTCCTCGTCATGGGCGGCTCCTGTCAACGCACCTGGGAACACGCGGTACCGAAGACGCGTCGGGCGACTGGGCCACGGATCAGCGTTCAGTTCCGGCCGCGAAACGTCAGGTGAAGCCTCCAGGGCCCGTACAGTTGACGTATGGCGCTCGGCTACGACCGGGCACACTCCGCTATCGGACATCACAACGCGAGCCGGAGTGGTCGAAAAACTGGTTACCCGCCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : AACTTCCCGCGTCCAAGCAGGTCTCAACGAACCCACCGCATCGACGCGGTTCGTTCTACGCCGATTTCGGACGAGCGCATGGACTCTCGGGAGCGAGCAGACGAACATGCAGCACTGTGCTCGTGCCAGTGCTCGGATGCCGATAGGTTGATCAACATGACGCACGCGCTGACTGTCATGCCGCTGCACACCATCACCCAGGTGTTCGGCGAGGATGGCCTGCGCGAGAGGTTCCTTCTCGAAATCGAGGACCTGCCGGATCGTGACCGCCTCACCGACGCTCTGGCCCTCGCCACCGAGCTACACCGCAACGACGGCTACGGCGACGAGCCATACATCAACCACCTCTTGCGCGTCGCGATCCGCATCGCCTCGCACTACGAGGTGCGCGACCCGGACATCGTGATCGCCGGCCTCCTGCACGACTCCGTCGAGGACCACCCCACTGAACTCGCAGGCACCTGCCAGGGCTCACCTACCGAGGCCGCGCTCGCCGAACT # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24526-24252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRD010000005.1 Nocardia puris strain N-10 NODE_5_length_475207_cov_37.546725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24525 30 100.0 31 .............................. CCCGCCTCCAGCCGCTCGTAGGTGCGGCGAC 24464 30 100.0 31 .............................. TATTGTGCGAGATCGCTGTTCACCGCAGATC 24403 30 96.7 31 .............................C ATTCGCCGGACATATGCAGGTGCGCAGTGAC 24342 30 83.3 31 A.......................AC..CT CGGTGACCTCGGGATTCAGCTCGATGTCGAG 24281 30 93.3 0 ........................A....T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGCCCCCTCCCCCGGCACCCCAGCGTCCTCAGCCGCTGCTTCCCACTCGGTCAACGCCAATTCCGAACCCGTCCCGAGTTTGCACCGGACGAAACCCGGAAAGCCTTGGGTCACTTCAGCTCCCAGCGCTGAATAGAACTTTCTCGCGCGATCCACATCCGCGACACCGAGCATGATCACACTCACCTGAATCGCCATATCGCTGCCCTCGCTTCGTGGTTGATCGATTCGTTCGCGACGCCGGATTCGCGCCGGTCTCGATTCTTCCCGCACGGCCATCAACCATGCTTCTCGATTCCTGACCGATCGCGCCCCCGACGCACGCAGACGAGACAGCCGCATATCGACCCAGGGCGTCGACCTGCCTCATCTATCGCTGCCCGGTGTTCGCGTCGCACCGCATGCCCACGCAGCCGCGCATCACTCGACGGCCGACTGAGCCCGTCCCAGGAGTGGTCGAAAAAGTGGTTACCAGCCGGTAGACTGCCTGTTCAGGAAGT # Right flank : GCCTAGTCGATGAACGCCGCAGCCGCGGCACACCCAGACCGCTGCATCCGCGGCCGACACCGCCGTAGCGGATGACCACCTGTTGAGTGGGCGCACGATCATGGCGAATACGGCTTGTCCGCATCAGGTTTCAAACCTGCACAAGTTAATTTCGCTGGGCTCGCCCGTCGAAACTGCCGGATGAATCGAATGACACGAGCTCGAACACGACCGAACCATCCACAATCCGATCATCGAAGTCACCGCAACGAAGCCTGGCTCAGCACACGGCGGGCCAATTCCGCTGCGGTTCCCGTAGTCGTATCGACGACCGCGTCGTAGGGGCATCCATGATCGTGCACTATGTCGAAATGCCCACGCGCCAAACCGATTTCAGTGCGACGACGGGCCAACTCTCGTTGCTCGGCGACAGCGAGGGGACAGTTGACGCAGACCAAGTGAACGCCCAGACCGGCCAGCGCCTCCATCCACATCGGCATAAGATCCGGCGTCAACAGCAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //