Array 1 1612197-1611567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001976.1 Dickeya dadantii NCPPB 898 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1612196 32 96.9 33 .................T.............. TTGCCACCGAGGTTGACACCGTATTCGCCCCCG 1612131 32 96.9 34 .............T.................. GGGTCGTGGTTTATGGCGATATCAACGCTACGAC GGTGC [1612108] 1612060 32 96.9 34 ............A................... TATCGCGATGCGATGCTGTCCGCCGCCAATCCGT 1611994 32 100.0 33 ................................ TGTCAATAACTGTACGCGATGGGCATCAGGAGG 1611929 32 90.6 33 ......T.....A........C.......... CATGTCTGATAGTCCTCCCACAGCAGCGCCAGC 1611864 32 96.9 33 ...............................A ATCACAATGTCATCGACGATCGGAACCGCACCA 1611799 32 100.0 34 ................................ TTGAACGCCACTGGCCAGAAACACATGCTCAGGT 1611733 32 96.9 33 ............A................... CTCGGCGGCGGCGGAATGGGGCCGTCAACGTCA 1611668 32 96.9 34 .............A.................. ATGATAAGAATCTTAGTGTTACCCTGAAAACCAG 1611602 32 90.6 0 ......................C......T.T | C,ACA [1611574,1611578] ========== ====== ====== ====== ================================ ================================== ================== 10 32 96.3 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : CCTCACACAGGCGCGTGGATTGAAACAGGCTTTGCTGGTTCAGCGGCAGGTGCTGCCGGGTCGCGCCTCACACAGGCGCGTGGATTGAAACAGATGCTGATCCGACAGGACGACGCCCGCGTTCGTCGCGCCTCACACAGGCGCGTGGATTGAAACACGTATCACATCCGCGTTGCTTATTGCTGCTGCGTCGCGCCTCACACAGGCGCGTGGATTGAAACTTGATGATAACGCCATTACCCGGCAGAAGACCGAGTCGCGCCTCACACAGGCGCGTGGATTGAAACTGAGATAGAGTGAATAGATAGGGCGTGATATAAAGTCGCGCCTCACACAGGCGCGTGGATTGAAACACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTGAAACCTTGACCCGTCCTTGTGGTACTTGTATACAAA # Right flank : TTGATTCGCCGGTTAACGCGGCGATGACGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGCAGGTGCGCGGACAAGGCATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGATCGCACATTGGACTCCATCTGGTACAGGCTTAGCGCCAGAAAGGTAGGAAACGACTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACCGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCCTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAACGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAGATCGCCATGTCGATGCCGCGCA # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : GTCGCGCCTCACACAGGCGCGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1612703-1612344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001976.1 Dickeya dadantii NCPPB 898 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1612702 32 100.0 33 ................................ AGGCTTTGCTGGTTCAGCGGCAGGTGCTGCCGG 1612637 32 100.0 33 ................................ AGATGCTGATCCGACAGGACGACGCCCGCGTTC 1612572 32 100.0 33 ................................ ACGTATCACATCCGCGTTGCTTATTGCTGCTGC 1612507 32 100.0 34 ................................ TTGATGATAACGCCATTACCCGGCAGAAGACCGA 1612441 32 100.0 34 ................................ TGAGATAGAGTGAATAGATAGGGCGTGATATAAA 1612375 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 6 32 100.0 34 GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Left flank : AGCATATCAACCGGAGAAGCCGCTGTATGATGGTACTCATCACTTACGATGTGTCGCTGGAAGATGCCAACGGCCCCCGCCGCCTGCGGCAACTGGCCAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTATTCGAGTGCGACGTTGACGCTGCGCAATGGGTGGTGTTGCGCCAGAAGCTGCTTACCACCTATGACGAACGTGTCGACAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCACCACGGCGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACCCCCGGTACTCATCATTTTCCCGGCCGGTTGGCGCAATCTCATCCAATTGAATGATAAACAATTTATTTCTGTACTTCACCGTTGCGCCCTCAGCTTCCTCCCGCAGACATGACGTTGGCGTTCTTTTAGCGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : ACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATTGAAACCTTGACCCGTCCTTGTGGTACTTGTATACAAAGTCGCGCCTCACGCAGGTGCGTGGATTGAAACTTGCCACCGAGGTTGACACCGTATTCGCCCCCGGTCGCGCCTCACGTAGGCGCGTGGCGTGGATTGAAACGGGTCGTGGTTTATGGCGATATCAACGCTACGACGTCGCGCCTCACACAGGCGCGTGGATTGAAACTATCGCGATGCGATGCTGTCCGCCGCCAATCCGTGTCGCGCCTCACGCAGGCGCGTGGATTGAAACTGTCAATAACTGTACGCGATGGGCATCAGGAGGGTCGCGTCTCACACAGGCGCGCGGATTGAAACCATGTCTGATAGTCCTCCCACAGCAGCGCCAGCGTCGCGCCTCACGCAGGCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3905693-3905306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001976.1 Dickeya dadantii NCPPB 898 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3905692 28 100.0 32 ............................ CACATGGGATGATCAGGGGCGTTTGACGTGGT 3905632 28 100.0 31 ............................ ATAACTCTTATTCCAATCATTGGCTCTGTTC 3905573 28 100.0 32 ............................ TACTGTCCCCGGTTTTATTTTAGGCATATCTC 3905513 28 100.0 32 ............................ ATTGGCGGGTTGGTCGCCTTGTCAATGAGCTG 3905453 28 96.4 32 ..........A................. AGTATTGCGGGGTGAACTTCGCCCCGGCACGG 3905393 28 100.0 32 ............................ AAACTCAAAACGCTGTCTTTTGAATACTGAAT 3905333 28 92.9 0 ...........T........T....... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGAGCTGGCGGCGCTGGAGCAGACCGGCTGGCTGAAAGGACTGCGCGATTATACCGTCATCACCGAAGCGCTGCCGGTGCCGGCGGGCGTGAAGTACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGGCTGCGCCGTCGCGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACTGTCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTTTCGTCAAAATGACGATTTTTCTTTATTAATCAGGTGATAAGCGAATGTTCGCTACG # Right flank : AGTCTCCGGCCATGTGACTTACTCCACCCACTGTTCACTGCCGCACAGGCAGCGGTTGACCGGTGTGCTGGCGTTAAAAACTACGCTGAGGTGGGGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGTGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCAGCCAGTGGTCAAGGAGAGGTGGCACGTGAACCTCTCCTTGTCGTGCGTGCGATGAAGTGGCAAGGAAGCACCATAGCTTATCCCGCACGAAATCATTCACCGCTCCGGCATAAATCCGCCAATAACTAAAACCCCCCGCTGTTTGTCAACAGCCTCAGCCCCGCGGCGGGCTTCGCCGTTTCCTGCGCAGGAATAAAAAAATCCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3914792-3915119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001976.1 Dickeya dadantii NCPPB 898 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3914792 28 100.0 32 ............................ GTGGCAATGCAGCAGCGGATCAGCGCCGGGTG 3914852 28 100.0 32 ............................ GCACCACCACCGGGGTCTTTAGGTAATACAAC 3914912 28 100.0 32 ............................ TGGCGGGCCATCTGCCAGTTGGTTGTTGAGAT 3914972 28 100.0 32 ............................ CGCGGCGGTGCCTACTGTGGCATTGGCATGTG 3915032 28 100.0 32 ............................ TGCATTATGAAGCGTGCCGTGATTCAGTGCTG 3915092 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGTTGCAGCAAGGCGGCGACGCAGCGAATCCTCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGAACTTGAAGTATGACGGGTATAATCAACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCCATACCCTTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTACAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAATTCGTTACG # Right flank : AGGAGGGGCAAACAGTTAACATCCTCTCAGATGGTTCACTGCCGAGTAGGCAGCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAGAAAATGTCGCATGTAATGCACCAACCACGCGCAACGTTCACTGCCGAGTAGGCAGCTTAGAAACAATAAACGACCTGTGAAACCTTCGCCCCGGTGAGTTCACTGCCGAGTAGGCAGCTTAGAAATTCTGACGGCGTTTCTACCGCCGGAATCTGAATGTTCACTGCCGAGTAGGCAGCTTAGAAAGCGCGTGATGATCCCGGTGCTGGGCGGTAAACGTTCACTGCCGAGTAGGCAGCTTAGAAAAGTTGAGCGCAATCATGATAGCGCCTGCATTGGTTCACTGCCGAGTAGGCAGCTTAGAAAGGTGTCGAGTTCTGACGTGTGGCGGGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3915318-3915828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001976.1 Dickeya dadantii NCPPB 898 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3915318 28 100.0 34 ............................ CAATAAACGACCTGTGAAACCTTCGCCCCGGTGA 3915380 28 100.0 33 ............................ TTCTGACGGCGTTTCTACCGCCGGAATCTGAAT 3915441 28 100.0 32 ............................ GCGCGTGATGATCCCGGTGCTGGGCGGTAAAC 3915501 28 100.0 32 ............................ AGTTGAGCGCAATCATGATAGCGCCTGCATTG 3915561 28 100.0 32 ............................ GGTGTCGAGTTCTGACGTGTGGCGGGGTTCCC 3915621 28 100.0 32 ............................ AGCAGGCCGTGACAATCACAGCAAAATCAGAG 3915681 28 100.0 32 ............................ GATGGCATCGGCAGACGGGGCCATGTTCATCA 3915741 28 100.0 32 ............................ TGACAGTCAATGATCCACGCTTCCTCGCTACT 3915801 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AAGTGGCAATGCAGCAGCGGATCAGCGCCGGGTGGTTCACTGCCGAGTAGGCAGCTTAGAAAGCACCACCACCGGGGTCTTTAGGTAATACAACGTTCACTGCCGAGTAGGCAGCTTAGAAATGGCGGGCCATCTGCCAGTTGGTTGTTGAGATGTTCACTGCCGAGTAGGCAGCTTAGAAACGCGGCGGTGCCTACTGTGGCATTGGCATGTGGTTCACTGCCGAGTAGGCAGCTTAGAAATGCATTATGAAGCGTGCCGTGATTCAGTGCTGGTTCACTGCCGAGTAGGCAGCTTAGAAAGGAGGGGCAAACAGTTAACATCCTCTCAGATGGTTCACTGCCGAGTAGGCAGCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAGAAAATGTCGCATGTAATGCACCAACCACGCGCAAC # Right flank : ATCATTCTTCAAGAATTCAGCAAACTTGACCTGCTCCCCGTTGATTAACACACCGCGATGTTAGTAATGTCTTCATCAGCAACATGAGGACATCCCCATGAAGAACCGTTTTTCCGACGAACAGATCATCAATATTCTTCGCGAAGCCGAGGCGGGTGTTTCCGCCCGCGAACTTTGCCGTAAGTACGCCATCTCCGACGCCACGTTTTATACGTGGCGTAAGAAGTTTGGTGGCATGGAATTACCTGAAGTAAAAAGGCTTAAGTCACTTGAAGAAGAGAACGCCCGCCTTAAGAAGCTGCTCGCCGAAGCCATGCTGGATAAAGAGGCACTACAGGTGGCTTTGGGCCGAAAGTACTGACGACAGACCAGAAGCGGGAAGCCGTGACAGTGATGTGCAAAGCGACAGGTCTGTCGCAACGGCGTGCCTGCAGGCTGACAGGTTTGTCCCTGTCGACCTGCCGTTATGATGCGCACCGCCCGGCTACTGATGCGTATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //