Array 1 195788-197280 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSY01000004.1 Escherichia coli strain 86A 86ANODE_4_length_214170_cov_14.491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195788 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 195849 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 195910 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 195971 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 196032 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 196093 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 196154 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 196215 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 196276 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 196337 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 196398 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 196459 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 196520 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 196581 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 196642 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 196703 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 196764 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 196825 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 196886 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 196947 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 197008 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 197069 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 197130 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 197191 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 197252 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9044-10292 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQSY01000019.1 Escherichia coli strain 86A 86ANODE_19_length_101617_cov_14.7841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9044 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9105 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9166 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9227 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9288 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9349 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9410 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9471 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9532 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9593 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9654 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9715 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9776 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9837 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9898 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9959 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 10020 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10081 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10142 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10203 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10264 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //