Array 1 751-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFF01000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2196 NODE_28_length_45620_cov_5.0224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 750 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 689 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 628 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 567 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 506 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 445 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 384 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 323 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 262 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 201 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 140 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29-911 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFF01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2196 NODE_13_length_124658_cov_5.67084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 90 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 151 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 212 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 273 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 334 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 396 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 457 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 518 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 579 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 640 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 701 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 762 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 823 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 884 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17044-18520 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFF01000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2196 NODE_13_length_124658_cov_5.67084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17044 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17105 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17167 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17228 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17289 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17350 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17411 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17472 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17533 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17594 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17655 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17716 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17777 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17839 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17942 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18003 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18064 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18125 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18186 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18247 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18308 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18369 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18430 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18491 29 96.6 0 A............................ | A [18517] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //