Array 1 37878-39549 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCI01000018.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 37878 36 100.0 37 .................................... GGAGAACCAGGCAGAATTAATAAAAAGACAAGAAAAT 37951 36 100.0 33 .................................... CAGCTCCTCCTCTTCCACAACCAATCTTATACG 38020 36 100.0 37 .................................... TTTTGTACTATGATATAGGCATATTATTTTTATTGCA 38093 36 100.0 33 .................................... AATACTACGTAAATTATTGAATACTTTTTCACG 38162 36 100.0 34 .................................... GTATGTGCCTGAAGTGTTAGGAATACTTTATCAG 38232 36 100.0 42 .................................... TCTTACTACTGATTCAGTAGTTTGTCAAGTACTTTTTTCAAA 38310 36 100.0 35 .................................... AATCATTGACCAAAGGTCCGGAAATAATCTTTCCG 38381 36 100.0 38 .................................... AGTATATCTTTTTTATCTGTACTCAACCTAAAAATATT 38455 36 100.0 32 .................................... TTATATAGAATGGACAGAGAAGCATTCTTACA 38523 36 100.0 36 .................................... GCTATAACAAGCATTGCACAAAGAAGTAAAGATATG 38595 36 100.0 34 .................................... GCTGCTTCGTAGCTCTTAGCGAGCTCCTCAAACT 38665 36 100.0 34 .................................... CCTAGGAAGCATCTTCCCACCGACTAGGGCTTGT 38735 36 100.0 39 .................................... ACTTTTTGGTAAAAGCAGATTAAGAAAATTCTTTGGCAA 38810 36 100.0 32 .................................... TCGTTGAAAGTTACTTCAGCGACTCTATAATC 38878 36 100.0 36 .................................... AGGTTTGTTCTTCTTTTTGTAGTATTTGAAAACCTC 38950 36 100.0 34 .................................... CGCAGCACGTCAAGTCTTCTCATTATTAACCTCT 39020 36 100.0 33 .................................... AACCTTTAAGGTTCATGTAATCACCTCCTATTC 39089 36 100.0 36 .................................... GGGGATTGGCATGACATGGAAAGTACACTTCTTTGT 39161 36 100.0 35 .................................... CGGTCCTGTCCTGTCAGTGTGAACATTGGCTCGCC 39232 36 100.0 35 .................................... TGATATTTTTGATTATCTGGATTAGGTCTCCCTTC 39303 36 100.0 35 .................................... GGTTCATGTAATCACCTCCTATTCAGTTATCTCTG 39374 36 100.0 35 .................................... AATGTGTCCATCAACAAGCGAACTCTCCCTTCTCT 39445 36 100.0 33 .................................... TGCGGTTGTGGATTTGATAAAATTTGTGATAAC 39514 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================== ================== 24 36 99.9 35 ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Left flank : AAAAAGGAAGATATTTTGGAAGCAGTGCAGTTATTTTATGAACAGTATTATCAGAATTTCCAGAAGAAATTTTCACGAAGTGACAGGAGAAAACCGAATACAGTATTTCTGGGCGGCGGAAGCGGCTTTGTTTCCAAGACAGTGATTTACCCATTATTCGGAGAAAAAGAGGGCATTGAAACTGTAAAAAATATTTTTGACAGAACAAATGTGCCTAAAACCCATCAACATTATAAAGATACTCGTATAGGAGTATCCCCTCATATTTTAAAATGCACAAGATATCAGGGAAAAGAATATATGATGGGGGAATGTGAATTAAATATTATTTGAGCATTTTGTTCTTAAATGCGCAAAATTCTGTATTTTGCCGCGCATGGCTTAAATACTGGATTTGTGAGAATTTTTTACTTTCCAAAACGGCTGCATTTCAATAAAATTACTTTTCCCCCGCAATCCCCCTATTCGTCCCAGACAGGACATGGGGTTGCGGGGATGGT # Right flank : TTCATATCCAAATTTAGAAACAGTTACATTTGGCAATAAAGTGAATTATTACTAGAGAAACAGAGGTGATATCATGAGTCTTTTATATGTAAATGACAGTGGTGCAACAATAGGAATAGAAGGTAACTGCTGTACCGTAAAACAAAAAGATGGTTCGAAACGAATGCTTCCTATAGAATCTCTGGATGGAATTACAATTATGGGGCAATCCCAGATGACGACACAGTGTGCAGAAGAATGTATGCAGAGAGGAATTCCTGTAAGTTACTTTTCAAAAGGTGGTAAATATTTTGGCAGATTAATCTCAACAGGTCACGTCAATGTAGAACGTCAGAGAAAACAATGTGCACTCTATGATACAGGTTTTGCTGTGGAACTTGCTATGAAAATTTTAAGTGCAAAAATCAAAAATCAAAGCGTAGTGCTGCGCAGGTATGAGAAAAGTAAAGGTTTAAATCTGGAAGAAGAACAAAAAATGTTAGCTATCTGCAGAAACAAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGAAATGTAGCTCCCCGATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 65122-65949 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCI01000021.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 65122 36 100.0 30 .................................... AGTCAATAATCCGTAAATTTAAAGAACTCG 65188 36 100.0 30 .................................... CGGATATCTGAGCGATATGCTTTGCGCAAT 65254 36 100.0 30 .................................... ACGGGCAAAAGGTGACTAAACCAGTGCTAA 65320 36 100.0 30 .................................... GGTTTCTCGTTTCCACTCAATACGTCGTTA 65386 36 100.0 30 .................................... TACTGATTAACCGGTGTGCGAACATCTACA 65452 36 97.2 30 ..........T......................... ATTGTCGATGAGAAGAGGGCATAGTGCATA 65518 36 100.0 30 .................................... AGTGGAACCGCCAGAATGCCGCTAAAGCCA 65584 36 100.0 30 .................................... TTCATTGCGTGCGGTTCTGAAAAGAAGACC 65650 36 100.0 30 .................................... TCATTCAAAAACTCTAAGGACTATAAACCT 65716 36 100.0 30 .................................... CATGGGATGTACAGCAATGACACTTACACA 65782 36 100.0 30 .................................... GCCCCATTTCCGGCGTGTACATATACAACC 65848 36 100.0 30 .................................... GTTGTGTTGTTTGCAAGGTTCTTATCTCAT 65914 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGCTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAATCTGACTGAAAAGTTTATAGACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATTTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTGATTAATCTGGAAGGAGTAAAATCAGACTCCATCGAAAATGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTTTTAACAACCTTCTATCGCAAGAAGATAACGACTCGGTGAGAATCGGATTTGAG # Right flank : CCAGATGAAGGCCTTGGTACAATTGGAAAGAATCACATTCAGAGCAGTTCTAATTCTTCTTCTCAGAACTGCTCTTTTTCTCTGCTCTGAATGTGATACTTTCCTAATGAATTATATCATGAGCGAAGATGGCAGTGTTGTTGGCCCTTACGGTGAGAATGAATCAAAACTGTTTCGAAATGTAACTGCAGCTGATGTAGGAATTACGGAGAATAAGGGAACTGTAAAATATTACGGTGCAAATAATCAGGAATATATCGTAACCTATTCCAAATGCATGGTGACGGGATGGTATACACTTGCTATGATTCCGGTTAATGTTTTCAGTAAGAATATTGCTACAGATCTTACCAGGGCAATATTGATTCTGGTAACTATAGAAATTATTTTATCTGTAACTGCGGCTGTTCTTATTTCCAGAAAGATCGGGAAAAAAGTTTACAAACCGCTGCACATGATAGAGAAAACTGGCGAGGATAATTTTACTGCAAGAATTGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACAGAAGGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //