Array 1 309777-307979 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBS01000009.1 Pectobacterium versatile strain CFBP1552 Pectobacterium_sp._CFBP1552_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 309776 29 100.0 32 ............................. TATCCCTGTACCGTCCTGTAATCCTTTCCCTG 309715 29 100.0 32 ............................. CGATTGGCATCGTGCCGATATCGTTGCAGCCG 309654 29 100.0 32 ............................. CCATTGAAGACGATCAAGTTGGTCAGTATTCG 309593 29 100.0 32 ............................. TTCGATCAGGTCAGAAACTTGCTCTGTCGCAC 309532 29 100.0 32 ............................. AAACGCGCAGGAATTGCGCTTTTAGCGATCCA 309471 29 100.0 32 ............................. CGTCAGGAAGAAGTCACTGACGAGAAAGCCGT 309410 29 100.0 32 ............................. CGTCCAGATCGCGCAGAGGAGGTAGTCAGGGG 309349 29 100.0 32 ............................. GGCTTGGTATCACTGACCAGATTCCTTCCGGT 309288 29 100.0 32 ............................. TTTGGTGCAGATGTAAATGCTGTTTTGGCTGC 309227 29 100.0 32 ............................. CTAGGTGCCACTACGTCCGATGTTCAAAATTC 309166 29 100.0 32 ............................. TGATTGCACATGTTCACCCAGCTACCAGCCTG 309105 29 100.0 32 ............................. TTCTTCTTTCTATATCCTCGCATTGCGCCTGC 309044 29 100.0 32 ............................. CATGTTTCCCTAGCCGTTATTGCCCTGAATGA 308983 29 100.0 32 ............................. CCGATATCAACGGTGGCTGCACCGAGGTTACC 308922 29 100.0 32 ............................. GATGGGCTGAAAATAAAGCTCCATGACCCGAA 308861 29 93.1 32 .A.......................G... ATGTCGGATTAACCAGAGTACCGGCTGCGTTA 308800 29 96.6 32 .A........................... CCATCGGGTTTGGCTGGGACGTCAATGCACAG 308739 29 96.6 32 ............T................ CCGGTAAAAAAAGAGATTCGTGGACTGGCATG 308678 29 100.0 32 ............................. TCACAGGTGCGACGAACTACATGCATTGTGGT 308617 29 100.0 32 ............................. GTGGAAATCAATAACGCAAAGATTAAAAATCT 308556 29 100.0 32 ............................. AAATGAAATTTTTCTGGGTATGGGAGCAAAAA 308495 29 100.0 32 ............................. TAGCTAGGGGCTACAGGGTCAGGTTGTTTTTG 308434 29 100.0 32 ............................. TTCGTCAGCGTCCTGCTGTGAGTTAAAGATAA 308373 29 100.0 32 ............................. TGCCCCCACTCATTTCCTAATAACGCTGGAAT 308312 29 96.6 32 .............T............... CTCGCTGGAACCAACGACTCCCTGCTGATTAA 308251 29 96.6 32 .............T............... GCAGAAATTGCCGTCATTAGCACGGTTACTAT 308190 29 100.0 32 ............................. ATGGAAAACATCATTGCAATGATCCGTCAGTC 308129 29 96.6 32 ............................A TCGAGTGCGTCTTCAAGCGTCGGCACTGGGTC 308068 29 100.0 32 ............................. GCAGGCTGTTGTCACAAAACTACTCAGTACGG 308007 29 89.7 0 ..........T.T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGCCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGCGCTCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 235730-234923 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBS01000015.1 Pectobacterium versatile strain CFBP1552 Pectobacterium_sp._CFBP1552_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 235729 28 96.4 32 ............G............... TAACGATCCACTGTTGGGCCGTTTTGGTCGCA 235669 28 100.0 32 ............................ CGTAACTGTGCGGCAGCTAGTGCCACCTCGCT 235609 28 100.0 32 ............................ CGTGATGCTCTCAGTTTGCGTTCAATGATGGC 235549 28 100.0 32 ............................ GATGGAACGCGTGCCAGGCTAGAGGACATCGC 235489 28 100.0 32 ............................ TGTACTTCGAAAACAGGAAAATAGTAACGAAT 235429 28 100.0 32 ............................ TCGGCAGGCTCGGCGCTCACTGCGTCCTCTGG 235369 28 100.0 32 ............................ TGCCTCTTTCAAGGCTTCATACAGTGCTGTCT 235309 28 96.4 32 ...........C................ TGCCATCGCCCAAAAATGTTGTTCACTGTGTT 235249 28 92.9 32 ...........C...A............ TGATAATCGCCGCCTTCCACATCCAGTGTGCG 235189 28 92.9 32 ...........C...A............ AGCATCTGCTGAATGTTCTTAGCGTTAGTGCC 235129 28 100.0 32 ............................ GTGAAATTGAGACAGTTGTCTGTGCTCGCAAA 235069 28 96.4 32 ...........C................ ATGGAAGAGTAGCGCTTGCTGGCTGATGGTGC 235009 28 89.3 32 ...........C.C...T.......... ACGGGGCAGCGGACTCGCGAAAAACGGCTAGT 234949 27 85.7 0 .............C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGACCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 244688-246936 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBS01000015.1 Pectobacterium versatile strain CFBP1552 Pectobacterium_sp._CFBP1552_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 244688 28 96.4 32 .............T.............. CTGAAAAAATCGTAGAGCATGCATTCAGTGAA 244748 28 96.4 32 .............T.............. AACCGTCGAGCAGTTCCGCGCCGACTTCCCAG 244808 28 96.4 32 .............T.............. TGTCACAATCCCGTTTCTGCTGTTCCCCAAAC 244868 28 96.4 32 .............T.............. GGCTGATGGCAAATTCGCGGCGTTCATTATGA 244928 28 96.4 32 .............T.............. ATACACCTCCTGCCCTGAAATCCTGCCTTTGT 244988 28 96.4 32 .............T.............. GCCGCTTGCACGACGGCGCTAGCTATCTCGAT 245048 28 100.0 32 ............................ ATAACGGGTATCCGTAGTTTCTGTAATGATTA 245108 28 100.0 32 ............................ AACGGGTGATGTGTTTGATGTCATATCAGGAA 245168 28 100.0 32 ............................ CCGATTCAACTCGTGCAATGAATAGTCTACAA 245228 28 100.0 32 ............................ TTTTACTATGTGACTAACCCAGCGTTGAACTG 245288 28 100.0 32 ............................ AGTGCTCGGCGAGGTCATCTACGTATGAATCA 245348 28 100.0 32 ............................ TATCTACCCCATTCTCAAATCGCAATCCAAAA 245408 28 100.0 32 ............................ AACTGGTGAATTCCCCGCACTCCCGCCGCCAG 245468 28 100.0 32 ............................ TGCGATGCAGGCCGCATCGCACATATCCAGAT 245528 28 100.0 32 ............................ ATTGGCGCGACTACGCCGGATAATTGGCGTTG 245588 28 100.0 32 ............................ AGTCATGAAGCGTTGCTGATTTAATACCGACC 245648 28 100.0 32 ............................ GCAATCAAAATCAACTCTTTACCATCATCAGT 245708 28 100.0 32 ............................ AGCTCGCAATGATGCGGCACGCTGAGCTGCTG 245768 28 100.0 32 ............................ TCATATCCGGCAGTCAGGCGGACGGTACCGAA 245828 28 100.0 32 ............................ TCTCCTAAATGGACGTTCGCCTGCCCCTGAGT 245888 28 100.0 32 ............................ CGCCACGATGGAACAACTCGTCAATAATGCCG 245948 28 100.0 32 ............................ GTTAGCTGGAGCCGTCGCCCTCTTCTGGTGGA 246008 28 100.0 32 ............................ TTTAACTATGGAGCAATCATGGCAAATTTAGA 246068 28 100.0 33 ............................ AGACCAGCGCGGTGACAGGCTGAAGGGGGAAAA 246129 28 100.0 32 ............................ GCAGGGAATTACAAATTAGCATATCAAATACC 246189 28 100.0 32 ............................ AGCAAAGAAACGTCGCCGTTAATTACGATAGA 246249 28 100.0 32 ............................ ACTCTCCATCTGGGGGTAATAGTGAATTTTTC 246309 28 100.0 32 ............................ AGCATTCAGGATGATCACGCTACTGTTACAGG 246369 28 100.0 32 ............................ ATTGTCTGGGTAGTAATCGTGTCTTGAACGCC 246429 28 100.0 32 ............................ TTGAAATGAGAAGCTGTAATTTAGAGTGTTTC 246489 28 96.4 32 ..........A................. CGAAAGGGGGTTTATAATTACAAATTTGTAAC 246549 28 100.0 32 ............................ TGATTATCCTCCTCGTCTTCATTCAGCTTAGA 246609 28 100.0 32 ............................ ACCGTCCCATGCTTTCAACACTACTTCGGCAT 246669 28 100.0 32 ............................ AGCATTTTACGGGATGACCTGGACGGCTTCAG 246729 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 246789 28 100.0 32 ............................ TGACGGGACAATATCAGGCATGGGAATCCTGG 246849 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 246909 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAGACTCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGCCGAGCTGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGAGCGGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAATTGTCCTTACAGGGAAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCATAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAATCCTAATGATTCCTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 254084-253815 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBS01000015.1 Pectobacterium versatile strain CFBP1552 Pectobacterium_sp._CFBP1552_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 254083 28 100.0 32 ............................ TTAATTCAGGCGTAAAAAAACCGCTCGTGGCG 254023 28 89.3 33 G..C........A............... ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 253962 28 85.7 32 G..C.......CA............... CACGCGCCCTGATTCAGGTCGGCCTTCTGCGG 253902 28 100.0 32 ............................ TCCCGTTGTTTGATTAGCGCCCGAGTTAATGC 253842 28 78.6 0 G..C........AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 90.7 32 ATTTACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTTGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCGGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGGATTCAATATTGGCAGGAGTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGA # Right flank : ATAAAGCTAACCTAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //