Array 1 21926-18657 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWYA01000102.1 Ligilactobacillus ruminis DPC 6832 NODE_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21925 30 100.0 36 .............................. GCACCCTCAATGGCTATAACCTCCCTTAACGATTGC 21859 30 100.0 35 .............................. ACATACAGGACAAGCTTGTCAGCCGGCTGGGCGGT 21794 30 100.0 36 .............................. GTACGATGTATTTCGTGAGATGGCACGTCAGTTTCT 21728 30 100.0 35 .............................. CGTGAAGAACGTATGGTTGACGCTGGCGCATTTGC 21663 30 100.0 35 .............................. CTATCTGCTGGCAGTGTCCGTCGCCGATGCACAAG 21598 30 100.0 36 .............................. GCCATTGCAATGACAGACGCTGACGATGCTGCTAAT 21532 30 100.0 38 .............................. AAAGTTTGGCTACTCTATTCCGCGTCGTAACGGCAAAA 21464 30 100.0 36 .............................. ATGTTTTTTATAGTCAAGGGTTTTGTTGATAGTGAC 21398 30 100.0 38 .............................. TGGATAATGCTATCAGGGCCTTTCTTTGCCGGCTTGAT 21330 30 100.0 35 .............................. GTGGCAAGCAATTAGCGAAGAGGGCGAAGACCTCG 21265 30 100.0 36 .............................. GACGATGAATCCAATCTTTTTGATGACCCATTTTTC 21199 30 100.0 36 .............................. GAAAAAGAATATGTGGAGATGTTAAAACGTGAAAGC 21133 30 100.0 37 .............................. TCCACTCTTTGGCTTGTTTTGCGAAGATGATTGCGCA 21066 30 100.0 34 .............................. AACGGCGCTACAACGAGAGCATCTAAGCTAGTAG 21002 30 100.0 35 .............................. GCGACAAAGCGCCAGGTCCGGACGTTCTTCTCGAG 20937 30 100.0 35 .............................. ACGTCTGGCCGTGTAGACATGTGACGTCTGTCCGC 20872 30 100.0 35 .............................. TGTAGCTTATTTGTTGTCTAAAAATGTTGACCTGT 20807 30 100.0 35 .............................. TTTGACGCTAATTGTGCCGTGGTATTTGAAACAGT 20742 30 100.0 38 .............................. GGGTGAAGCATACTGTAGATAGTCTTGCCGTTGCGACT 20674 30 100.0 35 .............................. TACTTTTCCTCAATCAAATTTACTGTTTCTACAAA 20609 30 100.0 36 .............................. TCCAGAGTCACGTACGTGCTTTTGAAATACGGGTTA 20543 30 100.0 35 .............................. GTACACTGCCACTCAGACGCAGCATATCAAGATGG 20478 30 100.0 36 .............................. GTGCTTTAAGTTGTGATGATGCGGGCATAAGCACTG 20412 30 100.0 36 .............................. GTAGTACTGGCATCAAGCAAGAGCAGGCGGGCTAAA 20346 30 100.0 37 .............................. TTGATTGTTTAGCTCTGCTATCAACTTAGTAGACTGG 20279 30 100.0 37 .............................. TTAATTATCTAACTCCTGTATTAGACAATAAACTTTC 20212 30 100.0 35 .............................. GTGCTTCAGTGCTTTTATCGTACTCCGCTTGTAAC 20147 30 100.0 37 .............................. TGTTGTTGTCGTTGATGTTGTGATGGGCACCATGCCG 20080 30 100.0 36 .............................. TAAAATGTAAACAGTATGGGCTGGCGGAACTTTATC 20014 30 100.0 35 .............................. GGATGGATAACAGTGTGGATAGTCTTCCCGTTCCG 19949 30 100.0 37 .............................. CCGGCTACATAAGTAGAAGTAAACTGGTAGATACCCA 19882 30 100.0 36 .............................. ACGACGTTATCAGAGTTGAAATGAACGACAAAATTA 19816 30 100.0 35 .............................. ATTCCCGCCAGTCTTTATAAGCCAGCTCATCCAAG 19751 30 96.7 37 ..........G................... TTGACAATTGCTTCTCCAATTCCGATTTGAGTACGTC 19684 30 100.0 35 .............................. GTGGCAGGAAGTAACCCATGCACTCCTTGGCTTTG 19619 30 100.0 35 .............................. GAAGGCAGATATGGATATTAAAGGCATGTCAGCTC 19554 30 100.0 37 .............................. CAGATACCAAAACGGGGCTTTGTTGGATAATGACAAT 19487 30 100.0 37 .............................. TATTATATCGGGTATGCTAAAGTTAAATACGGTGCGT 19420 30 100.0 37 .............................. TCTTTGCGCAGCTCATCGACCGTATCCTGATACCAGA 19353 30 100.0 35 .............................. AAAGACGCAAGCAAAGAAAAAGGCGAGTTACTGGG 19288 30 100.0 37 .............................. TTTGATTGCATAAAAGCAAATGTATCAACAATGACAT 19221 30 100.0 35 .............................. TATTACATTATATATTATAACTCTTACAAGCTAAA 19156 30 100.0 35 .............................. TGTCCATACGGTCGATTTCTGCTTTAGGATCATCG 19091 30 100.0 36 .............................. TAGTTTCAGACTCTACGGTCAATCATTAAACAGAGC 19025 30 100.0 36 .............................. CAGATATAGCAGAGCTTTGGCGGTTGCCCTTACCCC 18959 30 100.0 37 .............................. ACATTTAAGACGTGGCCACTGGTCGCATTTCTGGACG 18892 30 100.0 37 .............................. CGGGATTTCACTGGGCTTTATTTCACCAGTCTTTTCT 18825 30 96.7 40 .............................G TCGTATTTATCCATCAAAACGAAATTCTTTTGGCACTCAA 18755 30 100.0 35 .............................. GACTTTGTAGCGGTTGAATCACTGTCGCGCGACAA 18690 30 96.7 0 ........................T..... | C,TC,A [18660,18663,18667] ========== ====== ====== ====== ============================== ======================================== ================== 50 30 99.8 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : TATACCCACTTTCGATCATGTCCTTGAGC # Right flank : GGTGACGATAAAAAAATAAAACAACGGAATCATATAATTTTAAATCGTTTTTAGCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCAACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATTGCCTGTTTCAACGCATCCTTTTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACACAGCCCAGTGCGAACCTGTTCGTTGTCGTCTCTGTATTTTTCATGCGAAAAAGATATTTGGAATATGATTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCAATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCTCGTTTACGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTATAGATGTGGATCAGTTCACCGAGCGAAATGTGTTGCGAAAGCTCGAGAAGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 12588-15074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWYA01000076.1 Ligilactobacillus ruminis DPC 6832 NODE_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 12588 30 96.7 36 .............................C TATGCTCGGCGCAGACGGCCGGCTACATGCCGCCGT 12654 30 96.7 38 .............................C TTTGCAAAAAAGGTGCTTACATAGTATACTTGTTTTAT 12722 30 96.7 37 .............................C GTTGCTGAGCGCTGGCCGTGATTTCATCAAGCGACGT 12789 30 96.7 35 .............................C AAATTCTTAAAAGCGTCGATTACCGGTTGAATTGA 12854 30 100.0 39 .............................. CTGGACGAGCTGCGCGATGACCTGCTTTCAGACGAAGAG 12923 30 100.0 36 .............................. TCTTCAAAACTTTTTTTACCGATGAGCTCGGTTGCT 12989 30 100.0 37 .............................. GTACACATGATCTGACAGCCGCGTTAACCTGATGCAC 13056 30 100.0 37 .............................. TTTTACATCAATGCTTGACAGTACGCTGACAACTTCA 13123 30 100.0 37 .............................. GCCGGTTGGCAAAGTTAGAGTAGCTGAAAGTGATGTG 13190 30 100.0 37 .............................. GTCTGTAGGACATGGCCACCCTGCACCGATGAGACAG 13257 30 100.0 35 .............................. AAGGTAAACGGTTATATGTACTCGAAGAATACGCA 13322 30 100.0 35 .............................. CGGCTTCAAGCCATACGGGCATGAGCGCAATCAAA 13387 30 100.0 35 .............................. CTGACCAGTCCGCTGATGTACGAGCTTTCAAGCGG 13452 30 100.0 35 .............................. TGTCCTACAGACGGGGCATCAGAACCCCGTTTCGA 13517 30 100.0 36 .............................. TCAACACCAACTACATTAACTATTTGGAAAACGGTA 13583 30 100.0 37 .............................. TTGCTTTAAATTCTTCAATTTGTGCCTTGAGTTCCTC 13650 30 100.0 36 .............................. TGCGAAGTCAGGTAAGGCGATGGGTTGGAGTAACGT 13716 30 100.0 36 .............................. ACCGCCATATACGTAAAATCTGCCGTCCTTGGTCTT 13782 30 100.0 37 .............................. TTATACACGGTCTAACTCTTGTGACACCGTCCGGCAC 13849 30 100.0 40 .............................. TAAATATCCACGTACAAATTGCCGCTACTGTCTACGTTTT 13919 30 100.0 35 .............................. ATTACGCCGATTCCTTTTTTGCCGGTTATGTCATC 13984 30 100.0 37 .............................. ATTACTGGTCTTTGCTCAATCAGCTGGCAAACGTTCT 14051 30 100.0 34 .............................. CGTATCAGCGCCCGCACTGCTTTGATGTATGTCA 14115 30 100.0 39 .............................. CCATAGATGTCACTGGCAAGCTGGCAACTAAGATCATCG 14184 30 100.0 36 .............................. TCAAAAGCCGGCAAGAGTTTTCTCTTGATCAACCTC 14250 30 100.0 36 .............................. ACGATACCCTTGAGGGGCGTCCAGGCTCGGAAGTGG 14316 30 100.0 35 .............................. TACAAAGTGGATTATGAACGAGGTGGCGTGGCAAG 14381 30 100.0 38 .............................. TCATCAAATCTTCTTCACCGTAAATTTTTTTCTCCATT 14449 30 100.0 36 .............................. TTTGCCACCAAATATAGGTGTGCGCCCGTCTGCCCA 14515 30 100.0 35 .............................. CTTTGAGTGCGTCGAGTGCAAGCGTCAGGGGCTAG 14580 30 100.0 36 .............................. TCAGCCAGCGCGACGAAAACGGGAAGCTAAGGCAGA 14646 30 100.0 37 .............................. GTCAAAAGCACAGGCCAAGTACCTGCGTGACAACTTC 14713 30 100.0 37 .............................. ATGCTTGATGTTGTGATGATGTGGGCATAAACACTGT 14780 30 100.0 36 .............................. GCTGCAACTGGTGATTGACGCATGGCGCGACGGAGA 14846 30 100.0 36 .............................. GTTTTGGAGACGCCTTGCGTTCCTGTTTTTCTTGGC 14912 30 100.0 37 .............................. TTAACAATATACTCAACTGCTTTGATGAATGTTGCTA 14979 30 100.0 36 .............................. CCACTTCGACCGGCATCCCGTACAAACGAGCAAACA 15045 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 38 30 99.7 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAACTATGGA # Right flank : TTATAAGTATACCCACTTTCGATCATGTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //