Array 1 348416-350541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017298.1 Pauljensenia hongkongensis strain HKU8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 348416 37 100.0 37 ..................................... CGGTAATCGTCCTCCACCCTGTAGAGTGCTCCGCCGG 348490 37 100.0 40 ..................................... ACTGGCCGCTGCTTGAACGCCGGTGGGGCGGTGACCACGG 348567 37 100.0 41 ..................................... AGCATGGCCTCGCGCGGTGTCATGGGGTCGATCATCGCTAG 348645 37 94.6 37 .....................CT.............. ATAATGGTCAAGCCGCAGAGCGGCCCTCACTTCTTGG 348719 37 89.2 40 ..............C......CT.....G........ GCGGCGCGACAGCCCCAGCTCCGGGCTGGTCACCCACCCG 348796 37 94.6 40 ..........G......................C... TTGAGGATTGTCGCGTTGTCGTATTCGGGGATGTTGGGCA 348873 37 94.6 36 .....................C..............G GTGGAGCCGAACCCCACCGGATCTACGTGGTGCCCG 348946 37 94.6 39 ........A........................T... GGCGCAAGGACTGGAACAGGCCCAGCCCCACGCCCCCTC 349022 37 91.9 40 ..T......T...........C............... ACAGAGAGGACGTGGATCGTGCAGGGGATCCTGCTGGCGC 349099 37 100.0 38 ..................................... TTGTTGGAGAACACGGACCCGAACACGCTGATGTCCGG 349174 37 100.0 38 ..................................... CTTTGGAGTCGTAGTAGTACCATGCGCCGAGTCGTGAG 349249 37 100.0 36 ..................................... GCCCGCACCCCACGACGGCACTATCTCGCAGTCGCA 349322 37 97.3 35 .....................C............... TGGAAATCCAGGGCCGTTACCGTATACCCGTAGTC 349394 37 94.6 38 .....................C...........C... TGTTGATACGCAGGCCCTCTCCCCCACCTTCAACGTGA 349469 37 100.0 37 ..................................... TCGGTCTACGCCTCGTAGTACTGGGACAGGTTCAGAC 349543 35 83.8 38 .......-..-...T......C......T.....A.. ATCGGCCCCGTCGTCTGGTCCGCGACCGCTTGGAACGC 349616 37 100.0 37 ..................................... CCCAGGTGCTCGCCCGCCTGGACGCACCAGGACGCCA 349690 37 100.0 34 ..................................... TTACGGACCCCGGCCAGCGCGTCACCGCCCGACG 349761 36 94.6 37 ...........-.........C............... TTCGCGCCGGATTGACTTCCAGTACCGTTCCCGTACA 349834 37 100.0 39 ..................................... TTGACGGGATCGGTCATCGGCAGGAACACCGTGAACGGG 349910 37 91.9 38 A....................CT.............. GCTCTTGGAGGCGTCGAGGTCGTCGAGGTACCGCATGA 349985 37 97.3 37 .....................C............... CCCCTCGACCACTCCGACTATCCCGCTGAATATGCCG 350059 37 97.3 38 .....................C............... TCGCCGAGGGCACACTCGACGATCTGGCGGGTCGTGGG 350134 37 89.2 38 .......G......T......C......T........ ATCGGCCCCGTCGTCTGGTCCGCGACCGCTTGGAACGC 350209 37 97.3 36 .....................C............... CGCGCCAGATGGTACGTCGTCGTCGTATTGCCGACC 350282 37 86.5 35 ........ATG......G..........T........ ATCGAATCCTTCTTCAACTGGTTCACGAACTTAGC 350354 37 97.3 38 .....................C............... CCGATCGACTTGTAGGATTCACGGAGGGCGGTCTCGCC 350429 37 94.6 38 ........A.....C...................... GGCGTGGGGCCAAGGCGCGGCAGCTCCCGCACCCCGGC 350504 37 89.2 0 ...............A.............C.C.C... | G [350533] ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 95.5 38 GTCAGGGAGCACCCAGCACCATCAGGTGCATTAAGAC # Left flank : AGGCGGGTCGGCGTGGGTTCGCCGCTGCCTGCGGCGAGTGCGTGGATGAGGGACGAGGCATGGGCCAGTGTCGCGTCGAGGTCGGCGCTGGCAGTTTGGACGGTGGCGGGGTCGAGGTCTGCGGTGTTGGATGCGAGCATGGTTCGCCATGCGTTGGCGAGGGTTTCGGCTGCCGCGATGAGCGCGATGATGCGGTTGGGGTCGTCGGTGTTCATGGGTCGTCCTCACGCTGTGGTTGTGCAACACCTATAGACTTACTTTACAACCTTCAGGGTGACTTGTGCAACATTTCCGCGGGTGTCAGCATCGACTTTTCGTTGGAAAGCGGTCGGAAAGCGGCAGACGGAACAGTGTTCCGGGCGTCGGTGGCGACCCTTGTGCTCCCAACGAAAAGTCCCCTAAACTGGAGTCGTGCTCATTGGCCGGAGGGCTCCCTGTTCGGCCACTGGCGATCCGGTGTGACGTTTGCGCAGATCAACTGCCATTCGACACGCCGAGGG # Right flank : CTTTGCTCCATAGGAGCAGGTCGCGGTCCTCGACCCAAGTGCCAGGGGGTGGAGGCCGACCGCTGCTGCGGCGATGCCTCGTGCGGGCGCGCCGTCAGCGCTCCTCCGGTCCCCTTCTACCGTGAAGTCCGCACACAAGGGCCCCGAATTAGGCAACGTCGTTCGCACACAAGGGCGGAATCAAGCCGTTGTGTGCGATGTTGTGTTGCGTAATTCCGTCCCTTGTGTGCGTAACCGGGAACTGCGCGCGAAAGAAGAGCCCCCAGCGCCACCGGGCGTATCCGATCAGGGCCCCGAAGCCCGAGTCTAGGCCGGACCAGCGCCAGTACTGTGTCGGGGGACACCCTGCGCTGCTACAATCTTGGGGTGTCGGGGCACTCTGGTGGCCCCGATTGGATGCTGCACCGAAGGAGGGCGCGGATGCCTGTCGCACCGAGTACCGCACTGTCACTGGCCGCGTTGCTGGCGGCGCTCGTCGGCCCCGTGGTCGCGTACGCGTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCCAGCACCATCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [15-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 504558-503771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017298.1 Pauljensenia hongkongensis strain HKU8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 504557 37 97.3 38 ............T........................ CCCTTGGTCTCGACAGTGACGGGGAACTGTGTCATGTT 504482 37 100.0 36 ..................................... GCGATGGTAAAAGTGGTTTTCTTCTCGCGCTTCTCG 504409 37 100.0 38 ..................................... CCGCGAGGACACGGGGTATGAGGACTGGGACATTGTCG 504334 37 100.0 39 ..................................... TGAGGTAAATCCGGCCGCCCGAGGACAGCCAGACATCAG 504258 37 97.3 38 ..........G.......................... AGGGCGACCATCTGAGCATCAATGACTTCCTGAAGCTT 504183 37 97.3 40 ..........G.......................... CAGCGGGGGTTGTGGAGGAGGGCGATGGGGGTGGGGGTGA 504106 37 100.0 41 ..................................... CGATACTCAGCAAGCGCGGCATCAACCTCCTCCGGGGTCTT 504028 37 97.3 41 .......G............................. CAGGTTGAGGAGCATGGTCTTGAAGCTGGTGCCGGCGTCGG 503950 37 100.0 35 ..................................... ACCGGACCGGTCGCGAGTACGACCTGGACCTTGAC 503878 37 97.3 34 ..........G.......................... ACGACCCCCAGGCCCACCACGGCCACGACCAGGA 503807 37 86.5 0 ......A..T......................A..GT | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 97.5 38 GTCAGGGAGCACCCAGCACCATCAGGTGCATTGAGAC # Left flank : CGTCACCGGTTCCGCGAGATCGTTGCCAGGTGGGTGCCCAGGTCCTATTCGGGCGCCCCTGGCGGAGCGCTTCCCGCACACAACGGCGGTGTTCACGCAATACGCGGGCGTGCACAAGGGCGTGATTCCGCCGTTGTGTGCGCCTCGGTGTTGCGTAAATCAGGTCCTTGTGTGCGTTTCTGGCAGATTGAGCGGAAGCCAGGCGGGCTCGGCGGTCAACAGGTGCAAGTACATGCGGAGGGCAGAAATAGGGCTATATGGTAAGTAATATGGTGGTGTACGCAACAACTCTGTGGGTGTTGGCGTCGGCTTTTCGTTGGGAAGTGGTTGGAAAGCGGCAGACTGGGAGCTGATTCGGGCGTCGGTGGCGACCCTTGTGTTCCCAACGGAAAGTCCTCTAAAATCGACCTGTGCTCGCTGGTCGAAGGGCTCCCTGTTCGGCCACTGGCGATCCGGTGTGGCGTTTGTGCAGGTCATCTGCCGTTCGACACGCCGAGGGG # Right flank : GCTTTTCTGGGTGTGGGTGTCGGCTTTGGGCCTGTCAGTGGGCGCTTGGGGGTGGTGCGTGCTCCGGGATTGGGCGCCCGGAACGGCGGATGCTCCGGGCGGCTCTCGGACCCCAGTCCCACCCGCGGCGGATGGGGTGGTTATGCACAGATCATGGTGGGGGTCTGGCGTTGGGGGTGTGTGGGGCGTTACTATCGTGGGTGAGTGAAGCGGGCCACTGTGGTGGTTCGGGGTTCGTCACGAGGATGTGGTGTTGGTGGGAGTGTTCCCTGGTGCGGGGCGTTGCCCTGGTGGGCGTGGGCGGTCGTGCGGCGTGTGGTGGCTTGTGATGGCGCTGTGCGTGGCGGGGGTGTCGGGGTGTTCGGGCGGGGGTGGTGCGGGTGCTGGGGGGCCGGTGATGAGTGGGGATTATTACGTGCAGTCGGATGGGTCGTTGCGGCGGCCTGGTGGTGTGGGGGAGTTCCCGGTGCCCGATCCTCTGGTTGGGGAGTACTCGGACG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCCAGCACCATCAGGTGCATTGAGAC # Alternate repeat : GTCAGGGAGCGCCCAGCACCATCAGGTGCATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.00,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1006038-1007054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017298.1 Pauljensenia hongkongensis strain HKU8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1006038 37 97.3 39 .....A............................... GTCGAATCGTGTCTTGACCAGCAGCTCGGACGCCGCTCG 1006114 37 100.0 37 ..................................... CCCTACGCATGCTCCCGTCGGGGCACGGCACGGTCAC 1006188 37 100.0 38 ..................................... AGGGATATTCCGAGCATTGCAGACACGGCTTTCGCCGT 1006263 37 100.0 40 ..................................... CCACAACAACTCGTCTTCTCCTCCCCGAATAGCCATCCAC 1006340 37 100.0 34 ..................................... TTCGAATTGCGAGGGGTCGTAGAGACTCATGGGG 1006411 37 97.3 40 ........................A............ TTCGGGAGCCCGTGGTTCCAGTGGCGGGGCCGTCCGCCGG 1006488 37 100.0 38 ..................................... TGCGAAAAGCGACATTTTGTCTTCGATGCTGTCGCCTC 1006563 37 97.3 38 ........................A............ ATGTCGTACGCTTCGTGATGTCGTATTTCGGATCGAGG 1006638 37 100.0 38 ..................................... ATCTTGGGCGTGGTGACCCTGGGGTCGGCGACTTCGAT 1006713 37 94.6 41 .....................C.............G. CCGCCGATGATTGCGGACACCGTAGCTGACAAAGAAATAGC 1006791 37 94.6 39 .....................C..........G.... TTCGCAACGAAGTCGGCAGAGACCTGCGGGGCGACGTAG 1006867 37 97.3 38 ..........................C.......... CGACGTCGAAGACGATGCCGCTGGAGCCTCGTACCAGC 1006942 37 94.6 38 .....................C..............T ACGATCACACAGCCGACATGGGCACGGTCGCACCTCGA 1007017 37 94.6 0 .............................G....T.. | C [1007049] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 97.7 38 GTCAGGGAGCACCCAGCACCATCAGGTGCATTAAGAC # Left flank : CGCCCCCTCGACTCCAGGGACTTCACAACTCACCTGCACCCTTGAACGCGAAGAGCCACTTTTCCGAGGTGGAGGATGAGGTCGGTGCTGGCAGTTTGGACGGCTGCGGGGGCGAGGCCGTCGGTGTTGGATGCGAGCATGGTCTGCCATGCGTTGGCGAGGGTTTCGGTTGCCGCGATGAGTTCGATGATGCGGTTGGGGTCGCCGGTGTTCACGCGTCGTCCTCACGCTCTCATTGTGCAACACCTATAGACTTACCCTACAACCTCCAGGGTGATCTGCGCAATATTTTCGCAAGTGTTGGCATCGACTTTTCGTTGGAAAGCGGTTGGAAAGCGGCAGACCGGGAGCCGATTCGGGCGCCGGTGGCGACCCTTGTGTTCCCAACGAAAAGTCCCCTAAACTGGGCTCGTGCTCGCTGGCCGGAGGGCTCCCTGTTCGGCCACTGGCGATCCGGTGTGGCGTTTGCGCAGGTCAGCTGCCGTTCGACACGCCGAGGG # Right flank : CCTTGTTCCAGAAGAGGAGGTCGTGGTCCTCGGCCCAAGTGCCAAGGGGTGGAGGCCTGCCGGTGCTGCGGTGGCGCCTCGCGCGGGCGCGCCGTCAGCGCTCCTCCGGTCCCCTTCCGCTGTGGGGTGCGCACACAAGGGGCCCGATTCAGGCAACGCCGTTCGCACACAAGGGCTGGATCAAGCCGTTGTGTGCGGTGTTGTGTTGCGTAATTCCGTCCCTTGTGTGCGCGACCGGGACCTGCGCGCCAAAGAAGAACACCCCCCCCGGCGCCACCGGGCGCATCCGATCAGGAACCCGAGACCCTGGGGCCGGGCCCGACCATCGCCGATACCATGTCGGGGGAGCACCCTGCGCTGCTACGATTCAGGGGTGCCGGGGCGCTCTGGCGGCCCCGGTTGGATGCTGCACTGGAGGAGGGCGCGGATGCCTGCCGCATTGAACACCGTATTGCTGTTGGCCGCGTTGCTGGCGGCGCTCGTCGGCCCCTTCGCCGCGT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGAGCACCCAGCACCATCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.90,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1333289-1327772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017298.1 Pauljensenia hongkongensis strain HKU8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1333288 29 96.6 32 ............................G ACTTTTGGGGGGTTACGTGAGGGGATTTTTTC 1333227 29 96.6 32 ............................G GCCGTTAGAGTGGCTTAGCGGAAATGACATGA 1333166 29 96.6 32 ............................G GCGGAAAGCCCTGACGGCCCCCTCCAACGAGG 1333105 29 100.0 32 ............................. AGGCGCCTAGGTACGTCGTATTAGATTGTTTA 1333044 29 100.0 32 ............................. GTGGCCCCCGATCCCCTGCCCGCGATCACGTT 1332983 29 96.6 32 ............................T TAGTCATTTTTCCACTACCGTAGACACATGAG 1332922 29 100.0 32 ............................. CACGCTGAACGAATGGCTTGGCGTGTAGTTGA 1332861 29 96.6 32 ............................T GTTCATGAATATGCTCGACCCATTCCACTTAT 1332800 29 96.6 32 ............................G AGCTCGTCAAGCGCACCCGAAACGGCGTCCCC 1332739 29 100.0 32 ............................. GTGCCAGTGATCTTCCCCTTCCACGCCCCCTC 1332678 29 96.6 32 ............................G AGCCCCGTCGGCCCGCGACTGGCGGCCTGGAT 1332617 29 100.0 32 ............................. GCGGGGCGTGCGCGCCCAGTCGACGCCGGTGA 1332556 29 96.6 32 ............................G GGGTCTAGGAGGCGATTCAGGAGGGTTTCAGG 1332495 29 100.0 32 ............................. GTCGGGTTGATGGCGGCGGTGAGCGCCGTCCC 1332434 29 100.0 32 ............................. GCCTCGCACCCCACGACGATGCGCCGGATGAG 1332373 29 96.6 32 ............................G GCGCTCAGAAGGGCTTAGGTGAAATGACATGA 1332312 29 100.0 32 ............................. ATTGGGACCTCCGGGGCCTTTCGTTTGGGTTG 1332251 29 96.6 32 ............................G GCAGCCGCTTGTCGACGAAGACCTGCCGTACG 1332190 29 100.0 32 ............................. CGTCCTTTCTGGACACGCCCCGGCCGACCACC 1332129 29 96.6 32 ............................G AGGCCGCGCCCTGCGACCTGGATAAATCCTCG 1332068 29 96.6 32 ............................G GGCGACCTCAACAACGAGGCGGGCGGCCTCGT 1332007 29 100.0 32 ............................. TAGTTTTCGAAGGGGAATTGCGCGGTGCGCTC 1331946 29 100.0 32 ............................. CGTCGCCAACATTAGCGAAGACCTTGGGACAC 1331885 29 100.0 32 ............................. GTTGGAACCGCAACGATGGTGATGCAGGTCAT 1331824 29 96.6 32 ............................T GAGAAAGTCCCAGCGATGGGCGACGGCTCACG 1331763 29 96.6 32 ............................G CGGCGCACGAGCTCCCGGTGGCGGGGGTCGTA 1331702 29 96.6 32 ............................G ACGTGTCGACCCGGCCCTGGCCAGTGGCCCCC 1331641 29 96.6 32 ............................G TCCCGAGGGGAACGCACGCAGTCACCATCCGA 1331580 29 100.0 32 ............................. TCCGCCGTCAGCATCGCGCTGGCGGGCGCCGA 1331519 29 100.0 32 ............................. ACCAGCGTCTCGCCCGTGTCGGCGACAAGGCG 1331458 29 100.0 32 ............................. GGCGACCGCCTCAACCTCTCGACCGCGACCGG 1331397 29 96.6 32 ............................G CTGATCCAGTCCTGTTCAATATTGCTGTAGGT 1331336 29 100.0 32 ............................. CAGCGACACCATCCTCGGCGTCGGTAAAGAAA 1331275 29 100.0 32 ............................. ACCAGGCTGGGGCTCACCGGCGACACCCTCCA 1331214 29 96.6 32 ............................G GACCTTGCTGGCGTCGGTATGCGGACGCTCAG 1331153 29 96.6 32 ............................G TCCTACGACGGGTACATTCCTGCTGTCGCCCG 1331092 29 100.0 32 ............................. TGGTGGCCCGCGGCCTCCAAACCACGAAGAGC 1331031 29 100.0 32 ............................. GCGCACGTCACCGCGCCCATGGGCACGCGCGC 1330970 29 100.0 31 ............................. CCCGGACAGCGGGGATAGCACGGGACAGGGC 1330910 29 100.0 32 ............................. GAGTGGCCCACATCTCAAAAGGTACTCTGTAA 1330849 29 96.6 32 ............................G CGTGGATCGACGGCCAAGGCGATATCGGCGGC 1330788 29 100.0 32 ............................. CTCGGGGCGCTGGCGCCGTGGCCGCACACGAG 1330727 29 96.6 32 ............................G TTGAGTCGTCCATCGACGACGAAGGGGATGAA 1330666 29 100.0 32 ............................. GCGGGGATCGCGACTAGGCTCACTTCCTGGAC 1330605 29 96.6 32 ............................G CGGTTGCCAGGGCCTTGCCCGCCTCGATGGCC 1330544 29 96.6 32 ............................G GACGGCCGGCCCATCGACGCCGCCGCCAACCC 1330483 29 100.0 32 ............................. TCGGATCTGGCCGTTCCTTTGGTCGAGACCAT 1330422 29 96.6 32 ............................G GAGTTGCGCGAGGCCCTGGCGCTCATCAACGA 1330361 29 96.6 32 ............................G CGGTTGCCAGGGCCTTGCCCGCCTCGATGGCC 1330300 29 100.0 32 ............................. GCCGCCGACGGCGTCATATCCTTCGTCTCCGA 1330239 29 96.6 32 ............................G GCCCGCCCTGGAGGGGCGCCACACACGCGTAC 1330178 29 100.0 32 ............................. GTTTCCGCTTCGGAACGGTGCCGGGCACGGTG 1330117 29 96.6 32 ............................G GTCACCACGAAGGACCGGGCGACCCCCATCAA 1330056 29 100.0 32 ............................. GTTACGTAGTCGAGGTAGAGGTTGCCGAACTG 1329995 29 96.6 32 ............................G CGGCGGCACGGAGTCGATACGTCCGTGAGCAT 1329934 29 100.0 32 ............................. TCGAAGTCCGCTTCGTTGGTCTTCTTGGGGTC 1329873 29 100.0 32 ............................. CGCCCTGACCCTCATAGAAGAAGAAAGCAGGT 1329812 29 100.0 32 ............................. AGGCGCGCCATGAGGGCGCTCAGCAACCGCCG 1329751 29 96.6 32 ............................G TACGAGGCGAGCCGGGCGCGCATCGTCCTGCG 1329690 29 100.0 32 ............................. GTTTCCGCTTCGGAACGGTGCCGGGCACGGTG 1329629 29 96.6 32 ............................G GTCACCACGAAGGACCGGGCGACCCCCATCAA 1329568 29 100.0 32 ............................. CTCACGGCTGATGGTTGCCTGCGATGTGCTCA 1329507 29 100.0 32 ............................. ACGGAGCCCAACCACGGCGGGTCGCTCGCCGA 1329446 29 100.0 32 ............................. GCCGCGAGCTGCTTCTTGCAGACCCGCACGAG 1329385 29 96.6 32 ............................G ATGCGCGGCATCGTCATCGGCGGGTCCCTCAC 1329324 29 96.6 31 .......................A..... AGTCGCGGGGGGATTTGCTGGTGGAGGGGCG 1329264 29 96.6 32 ............................G GTCGGTGTAGCTGGGCACTACGTACAGCCTCT 1329203 29 96.6 32 ............................G GTCGCGGTCTGCATCTACGACGAGGCGCAGAT 1329142 29 100.0 32 ............................. ATCCACATGGACCCGCGCACAGGCGCGACCAC 1329081 29 96.6 32 ............................G GCGCCGAGGACGGCGAGGTCGTGGTGGTACTC 1329020 29 96.6 32 ............................T CGGCGGGGATCATCGTCCGCCAGCACCTGGTG 1328959 29 93.1 32 .............A..............G GTCGCCGACGCCTGGACCGACCTCATGGACGT 1328898 29 96.6 32 .............A............... CAGGCCGTCATGGCCCATATCGCCGTCACCGA 1328837 29 96.6 32 ............................G GCGTTGCGGATGGGCTCGAGGACGTTCCAGAC 1328776 29 93.1 32 .............A..............G AACTTCGTGACGGCCCCGTAGGGCCCATCTAC 1328715 29 93.1 32 .............A..............G GCCGCGTACTGGTAGACGCTGAACGTCTCGGT 1328654 29 93.1 32 .............A..............G GAGACCCCCAATGACCGCCCCCGGTGAAATCC 1328593 29 96.6 32 .............A............... CCGGCGAGGACACCGCCGCGGCATTCAGGCGG 1328532 29 100.0 32 ............................. CACTGGGCCGCGAAGTCGCGGACCTCCCTGGC 1328471 29 93.1 32 .............A..............T CGTGGTTTGGGTCACTTGTTGGGCTTGGTGAC 1328410 29 93.1 32 .............A..............G TGCCGTATCGACCCGGGTGTGACGTTCCTCCC 1328349 29 93.1 32 .............A..............G CTCAACCCGAAAAAAGTCGCGGCACTGGGCCT 1328288 29 93.1 32 .............A..............G GGGCCTAGAAGGGGGGTAGGAGCGATTTTCAG 1328227 29 96.6 32 .............A............... CCCCACACGGCCTGCGCGCCGGATTTGATGGT 1328166 29 96.6 32 .............A............... GACGCGGGCGTGTGCTGGCCGTCGCAGGCCGA 1328105 29 96.6 32 .............A............... TATCAGGAGGAGTTGTGACTACGCATACTTTC 1328044 29 93.1 32 .............A..............G TCCGGGTTGCCCTTCGGCGTGCCACTGGCCCG 1327983 29 96.6 32 .............A............... AGCGTAGAGGCGCCAGCCGCAGCAGCAGCCAA 1327922 29 93.1 32 .............A..............G GTGAGTCCGAAGTCGCGGATGCCCGCGCCGGT 1327861 29 93.1 32 ......T......A............... ACCGACGCCGCGGCCCCGCCGGCCGCGAACCC 1327800 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================ ================== 91 29 97.5 32 GTTTTCCCCGCACGCGCGGGGATGAGCCC # Left flank : CACGCGCGGGGATGAGCCCAGGCGCCTACGTAGTGTGGTTTAGATTGTTTAGTTTTCCCCGCACGCGCGGGGATGAGCCTGAGAAGGAACTCGAACAGGCACGGGACGCGCAGTTTTCCCCGCACGCGCGGGGATGAGCCCTGCAGAGATACGAAAGGGTGTTGCATAAGTTTGTTTTCCCCGCACGCGCGGGGATGAGCCTGGGAGCAAGAAATGAAACCCACAACCACCGTTGTTTTCCCCGCACGCGCGGGGATGAGCCGCCATCGGCGGCCCCTGTGATGGCGCCGTAGCCGTTTTCCCCGCACGCGCGGGGATGAGCCCGCCCTTCTACCCCCCTGCCTAGGCCAGGACACGTTTTCCCCGCACGCGCGGGGATGAGCCGGCGTCGAGCTCGCGGTCCATGCCCTCAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCCCTGACCTCGTCGACGGACATGAAGCCTT # Right flank : ACGGCGAGAATGGATAGTCCCGGGTTTTGTGGAGGGTTGGTTATACGGTGGTCGGTGGGGTGGTGGTGTGGTTGTGATTGTAGCGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1339167-1333404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017298.1 Pauljensenia hongkongensis strain HKU8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1339166 29 96.6 32 ............................G AGGCCGAGGACGCCCCCATGTGGGACGACGAC 1339105 29 100.0 32 ............................. GCGCGCTCGTACTCGCCGGCGCTCATGGTCTC 1339044 29 96.6 32 ............................G CGGACTTCGAGTTCAAGGTCGTGGACAAGCCC 1338983 29 96.6 32 ............................G TCCGTGATCGGCTCACCACACAGATGGCACAC 1338922 29 96.6 32 ............................G CTCACCGCCTCCAACGACCTGGTGCCCGCACT 1338861 29 96.6 32 ............................G AGAGGGTGAGTGAACTCACGGTCGCGGGGCTG 1338800 29 100.0 32 ............................. GCGGGCGAAGAACGCTTTGATCCTTCGCACGG 1338739 29 96.6 32 ............................G CCGGGCATGCGCTTCGACAAGTTGAGCCAACT 1338678 29 100.0 32 ............................. TCGTTCAAGGCATCGACCGAAATCGACTCCAA 1338617 29 100.0 32 ............................. AACTCCATTTCCATAATGCACACTCCCTACTC 1338556 29 100.0 32 ............................. CATCATGGGGACCGCCGTCCATGCCGTCACCG 1338495 29 100.0 32 ............................. CTGGTTCAACGCGCGGGGCATCGCAGACCAAC 1338434 29 100.0 32 ............................. AGGGTCAGTGCGCTAACGGAAAGGAACAGTCA 1338373 29 100.0 32 ............................. GATAGTATGACGTTGGTCTGCGATGCCCCGCG 1338312 29 96.6 32 ............................G ACAAATGTGTGTTTGTAGCAAGGAAAAATGCT 1338251 29 96.6 32 ............................T ACCAGGATGCCAGTGTGATCGCCCCGTCCCGG 1338190 29 96.6 32 ............................G GGCGCGGCGCAGATGGTCCAAGCCCTGCAGGA 1338129 29 96.6 32 ............................G GTTCGGGTCGGGTCCGAGGACGCGCTCGGCGC 1338068 29 96.6 32 ............................G ATCGCCGATATCAATACCCGCATGGGCCTGAC 1338007 29 100.0 32 ............................. GGCGGCCACCTGGTCCCTGACCTCGACGCCGA 1337946 29 100.0 32 ............................. AAGCACCAAGCGGCGCAGCGCCTGAGTGCGCC 1337885 29 100.0 32 ............................. ACCACGCGAACATGCTCATCAGGGAATGCTGG 1337824 29 96.6 32 ............................A TACTCAAGTACCGCCGCATAGCGTTCCCCTTC 1337763 29 100.0 32 ............................. GCGAGCCTGCGCGGCGCCGACGATGACTCCGG 1337702 29 96.6 32 ............................T GTCCTCGTAGGGGCGGGTCTCCCACTCGCTCA 1337641 29 96.6 32 ............................G GCCAGACGCTGCGCAACATATGGCCCGTCGAA 1337580 29 100.0 32 ............................. CCCGAGGGGAACGCACACAATCACCATCCGAA 1337519 29 100.0 32 ............................. CCGTTCCTCAGCCTCGCCGCCCAGGACACCGA 1337458 29 96.6 32 ............................G CCGGCTTTCGAGCCATGCGTAGTGGCCAGAAA 1337397 29 96.6 32 ............................G AAGGGCCTGGAGGAGCAGATCGGCGCCCTCGA 1337336 29 100.0 32 ............................. GTGGCTGGGGGTGCGCCCCTCGGCGACCTGGC 1337275 29 100.0 32 ............................. TGTTTCTGCGCCGCGTCGGCGAGGTCCTTCCA 1337214 29 96.6 32 ............................G GTGAGCAGGCCCTCGTGCGGGCCGTCGATGCG 1337153 29 96.6 32 ............................G CCCGAGAAGAGGGTCTTCACCCACTCATACGC 1337092 29 96.6 32 ............................G GGCGGGCGCGACCGTCTGGTCCCGCTGACCGA 1337031 29 100.0 32 ............................. CCAACCATGGATCAAGCCTCGCCGACGCCGTG 1336970 29 100.0 32 ............................. GGCGTGGGTAGCATCCGGGCGAGTTCTTCCTT 1336909 29 100.0 31 ............................. AAGGTCCGAGGCGTCGGGGCCGGGCGGGTTT 1336849 29 100.0 32 ............................. ATGAGCTCCATCCTCGGCGCGCAGCTCAAGAA 1336788 29 96.6 32 ............................G GTCGCCCAGAGCGTCGGGGCGGCGGTGGGGTC 1336727 29 100.0 32 ............................. ACCGTCATGCCCGTACCGGACAGCGCCGACGA 1336666 29 96.6 32 ............................G GGCCTCGGCGACGTCGAAGACAGGAGCAAGGG 1336605 29 96.6 32 ............................G TCGTCGTGCAGGAGGGGGTCGGTGTCGAATCG 1336544 29 96.6 32 ............................G CGGTCCCGGCGGGGACGGTCTTCGCCGGGGAC 1336483 29 100.0 32 ............................. GCCAGGTCTTGCAGCTGTTGGGAGGAGCCGCC 1336422 29 96.6 32 ............................G CTGAGCCAGCTCATGCCGGTCTGCCGCGCGCT 1336361 29 96.6 32 ............................G CGTCAGGGCGCGGGCAGTACGAGATTCGTACC 1336300 29 100.0 32 ............................. GAGGGACCAGCCCGCCAAGTCGCGCACCAGGT 1336239 29 96.6 32 ............................G CGCGCGCACGGGCTCCTGGGCCCCGAGCACGC 1336178 29 96.6 32 ............................G CGGGGGCGCCCGACCTCGGGCTGGCGGATGAG 1336117 29 96.6 32 ............................G TCGGGGTCGCCGTCGTGATCGACGGTGCGGCT 1336056 29 96.6 32 ............................G CCCGGCCTGGTAGGCGGCCTCCAGGATGCAGG 1335995 29 96.6 32 ............................G GCAGAGCTTCACGCGGCCGAGGTCGTCGGGGA 1335934 29 96.6 32 ............................T CCGCGCCGGAAGAATCCTGCGCCAGGCGTTCG 1335873 29 96.6 32 ............................T CCGCCGCACCGCCGACCGTGAACACGCCGACT 1335812 29 96.6 32 ............................G GGCCGCCTCGGCGGCCCGCAAGGAGGAACTCG 1335751 29 96.6 32 ............................G AGGGCAGCGGGAATCTCGTCGGCGAACGCGGC 1335690 29 100.0 32 ............................. CGGCCCCGCAGGTCGGGGACCCGGAACGTGAA 1335629 29 100.0 32 ............................. CAGCAGGTCACCTACGCCAACCCGCAAGGGGA 1335568 29 96.6 32 ............................G TTCTCGCTATTCGTGCCGTGGGTTTTCGTCTC 1335507 29 100.0 32 ............................. TCCTTTCCTCAGATGGCGACGGGCCCGGCGAA 1335446 29 100.0 32 ............................. GCGAACCAGTGGGTCATCAGCGACCTATCCAT 1335385 29 96.6 32 ............................G CGGGGGCGCCCGGCCTCGGGTTGGCGGATGAG 1335324 29 96.6 32 ............................T CACCCTGGCCCTCCGCGCCGACCGCGCCCTGC 1335263 29 96.6 32 ............................G TCTTGGGTCGTGGCGCCTGTGCGGCGCAGTGC 1335202 29 96.6 32 ............................G AATGCCTTGATCCTTCGCACGCTTGTGTCCTT 1335141 29 100.0 32 ............................. GAAGCGAGCGAACTCACCCGGATCATCGGGAA 1335080 29 100.0 32 ............................. CATCCGATCCCGGAGTCCGCTCCGGCGGCGGT 1335019 29 96.6 32 ............................G ATCGCCTGCCTCCTGCGCGAGGCCGCCGACGC 1334958 29 96.6 32 ............................G TTGCGCGGGTGGTCACCGAGCGCAGCGCGGAC 1334897 29 100.0 32 ............................. GCGCGTTCGGGAACCGGTGGACCACGGCGAAG 1334836 29 96.6 32 ............................G ATGGGCGACGCCGTGTGGCGCACCTTCGTCGT 1334775 29 100.0 32 ............................. ATGACAGAGTATTTACCCGGGATGAGCCCCGG 1334714 29 100.0 32 ............................. GCCGTGAAGATCCTCGTCGCCGTCATCGGCGC 1334653 29 96.6 32 ............................G CCCTGGCCCTTGTCGTCGGTTGTGGTGATGTC 1334592 29 100.0 32 ............................. GCGTGCAAGTCGGAGGGCTGGCAGCGCCAGCA 1334531 29 96.6 32 ............................G GCGTTGCGGATGGGCTCGAGAACGTTCCAGAC 1334470 29 100.0 32 ............................. TGATGGCGCGCAGCGGCATCTACCGGGTCGAG 1334409 29 100.0 32 ............................. ATCTGTCGCCGGGCTCTACTGTTGCCACATGA 1334348 29 100.0 32 ............................. CACCGCTGTGCGCACCTGCGGACCGCTCGCGC 1334287 29 96.6 32 ............................G TGGTCCCACGTCCACCTCTTGCGGTCCAGGTC 1334226 29 100.0 32 ............................. CCGCTCCGCATCAAGGGCGCCGCCACCGAGGT 1334165 29 100.0 32 ............................. CAGCGCAGCCGAGACATCCGACCAGGTCACCG 1334104 29 100.0 32 ............................. CGGGCGCCGCAGATTGCGACGGCTGCCCGCCA 1334043 29 96.6 32 ............................G GTCGATGGGCACCTGAGCGCTGCGACGGTCGG 1333982 29 100.0 32 ............................. GTCGGGGATGCTCAAGTCCGAACGCATGTAGA 1333921 29 100.0 32 ............................. TACATCACCTATGAGCGGTCGCTAGTGCACCG 1333860 29 96.6 33 ............................A GAGTGGGCGCGCTTGTGCCCTGACTACCACGTG 1333798 29 100.0 32 ............................. AGGCGCCTACGTAGTGTGGTTTAGATTGTTTA 1333737 29 96.6 32 ............................T GAGAAGGAACTCGAACAGGCACGGGACGCGCA 1333676 29 100.0 32 ............................. TGCAGAGATACGAAAGGGTGTTGCATAAGTTT 1333615 29 96.6 32 ............................T GGGAGCAAGAAATGAAACCCACAACCACCGTT 1333554 29 96.6 32 ............................G CCATCGGCGGCCCCTGTGATGGCGCCGTAGCC 1333493 29 100.0 32 ............................. GCCCTTCTACCCCCCTGCCTAGGCCAGGACAC 1333432 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 95 29 98.2 32 GTTTTCCCCGCACGCGCGGGGATGAGCCC # Left flank : TTGCACCTGTGGGACGACTTCGAGGGGACCGTCGCCGCGGGGGTGTCCTACGAGGAAAGATCCGTGACATGATCGTGCTCGTCCTCTCGGCCGTGCCCGAAGGGCTGCGCGGGCACGTCACGCGCTGGCTCCTTGAGATATCTCCTGGCGTATTCGTGGGGAACCTGGGCAGCCGCGTTCGAGAGCGGCTGTGGGAGATCGTCATCAAGACCATGGGGAGCGGTCGGGCGATCATGGTCTACAGGGCGCGCAACGAGCAGGGCCTCGAGTTCCTCACCTGGGGGGACCCCTGGCGCCCAGTGGACTTCGAGGGCATCCGGCTCATGATGCGCCCAGCGCTCGCCCAAGGGCGGGGCCAGTACACAGACCCCGCCGACGCGCCCGACACTGCCCGCCGTTTGCGCGGGCGCCCGGGAATGAGTAACTTCCAGAAAAGGCGGAAGGCTCGAGGGTTTCCAAGATCCGACCGACCCGAGCGGTAAAAGCCCAGGTCAGGAAGC # Right flank : GCGTCGAGCTCGCGGTCCATGCCCTCAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCCCTGACCTCGTCGACGGACATGAAGCCTTGTTTTCCCCGCACGCGCGGGGATGAGCCGACTTTTGGGGGGTTACGTGAGGGGATTTTTTCGTTTTCCCCGCACGCGCGGGGATGAGCCGGCCGTTAGAGTGGCTTAGCGGAAATGACATGAGTTTTCCCCGCACGCGCGGGGATGAGCCGGCGGAAAGCCCTGACGGCCCCCTCCAACGAGGGTTTTCCCCGCACGCGCGGGGATGAGCCCAGGCGCCTAGGTACGTCGTATTAGATTGTTTAGTTTTCCCCGCACGCGCGGGGATGAGCCCGTGGCCCCCGATCCCCTGCCCGCGATCACGTTGTTTTCCCCGCACGCGCGGGGATGAGCCTTAGTCATTTTTCCACTACCGTAGACACATGAGGTTTTCCCCGCACGCGCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //