Array 1 872776-875914 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397179.1 Streptococcus mitis ATCC 6249 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 872776 36 100.0 30 .................................... AATGATGCGCAAATTAAGGACGTATTAGGA 872842 36 100.0 30 .................................... TCTTCCTGGAAAATGTACTGCGCATTTTTT 872908 36 100.0 30 .................................... ACATTTCTTAACAATATTGATCTGAGTGTT 872974 36 100.0 30 .................................... GATAGCGAATATCACAAGCAGAAGAAAAAA 873040 36 100.0 30 .................................... AGTCTTGATAAGATATCGAATGATGATAAA 873106 36 100.0 31 .................................... TTGTACCCCTTTTTTGATAAAATAGGTACAA 873173 36 100.0 30 .................................... ATTATAGGTCGAACGTCGTTGAAAATGTTC 873239 36 100.0 30 .................................... CTAAACAAGCCAAGTCACTTGCGCCTTGTT 873305 36 100.0 30 .................................... ATGTACCTACTATGAAATCTTCACGGAAGA 873371 36 100.0 30 .................................... CGATTTAGAAATGAATGTCGTTCGAAGATG 873437 36 100.0 31 .................................... GAAGGTTTCAAGGACAGCGCTGGGCGTAACT 873504 36 100.0 30 .................................... TCCATGGTCTTCGGATTATTCGTCCGAAAA 873570 36 100.0 30 .................................... AATAGACCTTAAAGTAGTACTCCTTTTAAG 873636 36 100.0 30 .................................... TTAACAACCAAGTCTTTAGCATCGCCAAAT 873702 36 100.0 30 .................................... CAACAACTTGCAACGGAGATATAGATATAG 873768 36 100.0 30 .................................... GATGAATAAGCAGGAATTGATTGAACGGAT 873834 36 100.0 30 .................................... TCTCTAAAACGTCCAATTTGGATGGTTTTA 873900 36 100.0 30 .................................... GACATGGTGCGTTTGCTGGTAATGATGGTC 873966 36 100.0 30 .................................... TACCTAATACATTACCGACTGCAATATCCA 874032 36 100.0 30 .................................... AAACGTTTAGACAAATTGATAAGCGACTGG 874098 36 100.0 30 .................................... AGCCAGTTGTCTACCTAAACAAACAGAAAG 874164 36 100.0 30 .................................... CTAGAAAGGAATATTATGAACAACGCAGCG 874230 36 100.0 30 .................................... GGTAAAAGAAGATCCTAATTATATTGTAAG 874296 36 100.0 30 .................................... TTGATAAAGTTAAACCAGCTCTTCGTTATA 874362 36 100.0 30 .................................... TTTGGTATTGCTTTGACAGCAACGGATATA 874428 36 100.0 30 .................................... TTATAATTCAGTTCATGGGTCAGATTGTTT 874494 36 100.0 30 .................................... CAGCTACAAAAGCAACATCTAATCTAGCGA 874560 36 100.0 30 .................................... TCTAATTCTTTCTTTAAATTCTTTAATTCA 874626 36 100.0 30 .................................... AGGAATTTAGTGATGTAACAGGTTCCTACA 874692 36 100.0 30 .................................... CAGATGATGCATTCAACTTCTTAGCTGAGA 874758 36 100.0 30 .................................... CGCCTTTTACGTCATTACCAAGAATAGATT 874824 36 100.0 30 .................................... AAATCGGAAAGAAAGCTGCTGAAGCGTCTC 874890 36 100.0 30 .................................... TTTAGCCCATCAATCGATTTAATCGAGTTG 874956 36 100.0 30 .................................... ATCTTCCAAATCAACGGCAAGAATTTTGTT 875022 36 100.0 30 .................................... TATCTGTTAAGAAACTAGCCTATCTGGACG 875088 36 100.0 30 .................................... CGTTGCTTGAAAGTCTAGAACCAGATGATA 875154 36 100.0 30 .................................... AATTCACAGATGGTCTTAACGCTGCCAAAG 875220 36 100.0 30 .................................... CTGATTCTTATTCTGCAACGAAAGCCAAGT 875286 36 100.0 30 .................................... ACAACCAGCTCAGACAAGAAATCCAATCCT 875352 36 100.0 29 .................................... GAATGACAAAATCATAGTACGAACCATTG 875417 36 100.0 30 .................................... GTGAAATGGTTTCAAACCAATTCATTAAAT 875483 36 100.0 30 .................................... ATGAGCGTACTTTTGAGCGCGCATGGATAC 875549 36 100.0 30 .................................... CCTGTCTTTGTGTTCCCTGAGTAGGTATCG 875615 36 100.0 30 .................................... AAGGTCACAAGATGCTGATTGCTGGTCCGT 875681 36 100.0 30 .................................... TAGTAATCTCTTTCTTTTTACCATGAAAAT 875747 36 100.0 30 .................................... AAGAGACAGAAGTATGGCTTTCTTGTTTTG 875813 36 100.0 30 .................................... ATTCTCATTCCGATGTCTGTACTCTTGCCT 875879 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGTGAGAAAATGGAATTTCTTACTAATCATAATGATTCGTTATATATTGTTTTGTTTCCTTCAAATGAGGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATAATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACGTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAATCAATCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGAGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTTTTGTTTGCAACAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATATCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1522528-1523017 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL397179.1 Streptococcus mitis ATCC 6249 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 1522528 35 100.0 30 ................................... AGAACTTATCTGATGGCATTCGTCAGATGG 1522593 35 100.0 30 ................................... CAGAAGGCCTTCAAGGTCAGGTCCAAGAAG 1522658 35 100.0 30 ................................... ATAGTCTCAGTAGTTGTTTCTGTCTCTGAA 1522723 35 100.0 30 ................................... GAAAAATTCAGCAAAGTAGCTCAAGAACTA 1522788 35 97.1 30 ..................................T CAGCTTTCGTGACAAGCCCAACACTAGCAA 1522853 35 100.0 30 ................................... ACGCGCCACAGATTTATGAGATGATCATAA 1522918 35 97.1 30 .....................G............. CTGTTACTGTATTTCCACAAAATAAGATTA 1522983 35 97.1 0 .....................G............. | ========== ====== ====== ====== =================================== ============================== ================== 8 35 98.9 30 GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Left flank : ATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTCAGTAATAAATCAGTAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTGAAAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CCTCAATAAAAAAGCTCTCTGAAGTCAGAGAGCTGATTTGAGCTCGGGCTAAAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAACACTGTTTCCTTTCCCTATTTTCATACGGATTTTTGGAGCCCTTAGCATCATAATTCTTGCTGGATAAAACGTTTATAGACTAGGCGACGAGGCAAAGATTGTACTAATGGTACATCGAGCCGAAGCCAACGAAGTATAGAAACGTTTTAGACGCAAGATTAACGACGAAGTCCTAGAGAGTTGATCAACTCACGGTAACGGTTAACATCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTCTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAAGGTGGTTGATTTCCCAAGTAAGGACAGCAACTTGAACCTCTACTGAACCTGTATCACCTTCGTGACGTGCATATTGTGCAATGATTTCATTTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Alternate repeat : GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //