Array 1 108-1996 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBL01000026.1 Streptococcus macedonicus strain 211MA Sma211_trimmed__paired__merged_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 108 36 100.0 30 .................................... TTTGAATTGCTGTTGCAAGCCAGCTAAACC 174 36 100.0 30 .................................... TTATGAAACTAAAATTTGGTTCGAAGTCGC 240 36 100.0 30 .................................... AGAAGGAATTGACTAAAGTATGGCTTTTAA 306 36 100.0 30 .................................... TCAACCAAGAGATTAATTGTGAGTTTGTAC 372 36 100.0 30 .................................... TAATTTGTTCTATTTTTTTAACGTCATCAT 438 36 100.0 30 .................................... AGACTACTGCCACGACCTGCACAAAGGCAT 504 36 100.0 30 .................................... CGAAGTGATTAATCGTAAGCTTGAGTTGAG 570 36 100.0 30 .................................... TCTTTAAGCGCGTATCAAACACTTTTGCAA 636 36 100.0 30 .................................... TTATTGATTTTAAAATCATTGTCTGTATCA 702 36 100.0 30 .................................... ATCCGTTATGCTTTGGAACGTTATCACATA 768 36 100.0 30 .................................... CCTTGATTGTGGTTTTGGTTCAAATGGTAT 834 36 100.0 30 .................................... TGCCCTCTGCAAGCTCGTATACACCGTTCT 900 36 100.0 30 .................................... AATTAAGAAAAGAAAAAAAGCTAACTCAAA 966 36 100.0 30 .................................... ACCATAATCTTGCGCAATTTGCGTAGTTGT 1032 36 100.0 30 .................................... GTTTATTTCACTGAATTCTTTATCGTCAAT 1098 36 100.0 30 .................................... TTTTGGCGGGTAGTGAAAATATTGACGTCG 1164 36 100.0 30 .................................... CGTTGCCACATGACGCTAGCGAACATTACA 1230 36 100.0 30 .................................... TTGCTAAATCGTTTGAAAGCTGGTTAATAA 1296 36 100.0 30 .................................... GCCAAATGGTAAGGCAATCTTGCCACAAGG 1362 36 100.0 30 .................................... CAAATGTATCATTATTGACTACTGTCTTAC 1428 36 100.0 30 .................................... GGTCAAATTAAAAAGCGTAATGCAACTATT 1494 36 100.0 30 .................................... TTGGGAAAACCGTTATCACGCACAAAACGC 1560 36 100.0 30 .................................... TGAAATATATTGTTTTAAATCAGCAAGAGA 1626 36 100.0 30 .................................... CTGACGGAGCGTTACCAGATGTTGGTTTCC 1692 36 100.0 30 .................................... TTCTTGGAAACCGTTTTGACTGGCTAGCTA 1758 36 100.0 30 .................................... GTTGGTATTTGAGGTATTGTTCCGCCGTTT CTGTG [1772] 1829 36 100.0 30 .................................... ACAAAGTCGTTAATACTACTACTGAAGAAG 1895 36 100.0 30 .................................... TGATGAGTGGTTAAAAATCCATACTATCAG 1961 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ACTACAGAAATTATAGAGCTATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAGG # Right flank : CTTGACTATGTTTGATTTTCCTTTACCAATAGTTTTAGAGCTGTGTTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAACAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATTATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAGGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1606-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBL01000012.1 Streptococcus macedonicus strain 211MA Sma211_trimmed__paired__merged_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1605 36 100.0 30 .................................... TGGGATTTGCTTAACAGAAAGCGTATTGTA 1539 36 100.0 30 .................................... AGACAAGGTAGGTGGCTTAGAAGATGTGGT 1473 36 100.0 30 .................................... GGTCTGTCATATTGTATTCAGCGCATTGCC 1407 36 100.0 30 .................................... GCTGACTTGATGAAAGATGCTAACTTGTCT 1341 36 100.0 30 .................................... AACTATTCACAACATCAGTCGAAGAAGTAA 1275 36 100.0 30 .................................... AGATTAAAACTAATAATCATATTGAGAACT 1209 36 100.0 30 .................................... GGGATATTTGGCGCAAAATCATTCCGTTTT 1143 36 100.0 30 .................................... ATAACATTGATAACTTTAATGCACAAGTAT 1077 36 100.0 30 .................................... TAGATTTGCAGGAGAAGCACCACAAGACCA 1011 36 100.0 30 .................................... TGATTATTTGTTAGGACGTACAGATAATCC 945 36 100.0 30 .................................... AAGGACAGCGTGTGTATGTAACTGAAGTCG 879 36 100.0 30 .................................... AAGAAAAAATCAATGATGAAGTTTTAACGT 813 36 100.0 30 .................................... TAGTCCATCCGCTGGTTGGTTTAGTAGTCC 747 36 100.0 30 .................................... CTAAGACAGCTATAACAAGCACTACTAACA 681 36 100.0 31 .................................... CTGAAAGCGTGTTGGATTGGTTGACAGTACC 614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTCGAAAGCTCATTGGCTGCTTATTTAGATGAGGGGGTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTAAAGATGGTTTTATTACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAACTATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTAGCTGATAGGGAACATGTTAATTATTCAGAAGTTTTGACGCAAGCTTTAGAGAAAAAATTACAGCTTTAAATCGCTATAAACGTTGTAAAATCAAGTTTTTTGAGGTATAATATAGTTTAAAATGATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAACAATGGTCCACGAG # Right flank : TGGTATTTAGGATTTAGCAGGAATAGAATGTCATGAAACTTACTAAAGTTTTAGTGAAAACACCTTTTAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCGTCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAGGTGGCGCAATATTTAACATCGTTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //