Array 1 963889-965319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025218.1 Salmonella enterica subsp. enterica serovar Tennessee strain ATCC 10722 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 963889 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 963950 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 964011 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 964072 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 964133 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 964194 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964255 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964316 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 964377 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 964438 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 964499 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 964560 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 964621 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 964682 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 964743 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 964804 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 964865 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 964926 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 964987 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 965048 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 965109 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 965170 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 965231 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 965292 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 981943-985816 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025218.1 Salmonella enterica subsp. enterica serovar Tennessee strain ATCC 10722 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 981943 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 982004 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 982065 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 982126 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 982187 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 982248 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 982309 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 982370 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 982431 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 982492 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 982553 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 982614 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 982675 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 982736 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 982797 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 982858 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 982919 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 982980 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 983041 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 983102 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 983163 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 983224 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 983285 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 983346 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 983407 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 983468 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 983529 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 983590 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 983651 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 983712 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 983773 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 983834 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 983895 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 983956 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 984017 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 984078 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 984139 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 984200 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 984261 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 984322 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 984383 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 984444 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 984505 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 984566 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 984627 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 984688 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 984749 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 984810 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 984871 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 984932 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 984993 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 985054 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 985115 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 985176 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 985237 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 985298 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 985359 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 985420 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 985481 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 985542 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 985603 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 985664 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 985726 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 985787 29 96.6 0 ............T................ | A [985814] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //