Array 1 41498-41712 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTU01000051.1 Citrobacter braakii strain C7 NODE_28_length_45159_cov_119.398585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 41498 29 100.0 32 ............................. GGTATAAAGGCCAGACTCGGAGATAACGAGCG 41559 29 100.0 32 ............................. GAGTCCGTCTACATTTTTTTGGGTTGGATTCA 41620 29 100.0 34 ............................. ATCGGGTGTCGGTTAAACCGACCCCCTTCTCATC 41683 29 86.2 0 ..G...T...T.........A........ | A [41688] ========== ====== ====== ====== ============================= ================================== ================== 4 29 96.5 33 GTATTGCCCACGCGGGCGGGGATAGACCG # Left flank : TATCCCCTGCCTCATGGAGCAGTTGGAGAGCAACCTGTACCGCGCTGACGCGCTGGCCACCGCTGTTCGACTGAATCTGGAATCAACCAGCGCGTCGCTGTATACGCAGGAAACCATTCACAATCTCGACACGCTGCGCCAGCTTCTGGATGACGCGAAAAAATATCATGAGGAGCTGGCGAAGCAGCTGCGTGGTCAACCCGGAAACTAGCGTACTGCAGGGCTGGCCAGCCCTCTCCATGACGGAGAAAGTCCGGGCGGTGCCGGTAGTGACGCTGGCGGTTGCAGTCGCTGTTTCCGCTACCGGCGCGGGTTGTTGCAGCAATCGGTCATGACCAAACGGACAGGCCACATTTTGATGTAAATAGGTGCAGGTTGCGCCGAATTAACGCCCCCGGATATGGCCAGTGCGCCGTAGATGAACGGGGAAATCGCCGTAAAATTTGGTGGAATTTTCAGGTGAGTTTAATGATCTGATATTACTACCAAATCTCGCAAGG # Right flank : GACAGCATCATTAAACAGGATGATCCAACATGTTATACGCGATAAAAATCCGGCTATACCCGAACAGGGTACAGGAAAACTATTTCGCTCAGACGTTCGGCTGCTGCCGGTGGGCATTCAACAATGCGCTGGCATTCTGCCAACAACAGTATGATGCCGGCGAAAAACGTCCATCTGCATACGATCTGATGAAACGCCTGGTCAGCCTGAAAATCGAATACCCCTGGCTGGCCGACGCCGACAGCCAGGCGCTGAAACAGGCCTGTACGGATGTTGATTCGGCGTATAAAAATTTTTTCCGTCGCGTGAAAAACGGGGAAACCCCGGGCTTCCCGCGATTTAAATCGAAACACCGTGGTGATGCCACCTATACGGCCACCGCTGCCGCCAGTATCAAACTGGAGCCGCGCCAACTGAAATTACCCAAAGCCGGCTGGGTGCGCTGTCGGGGGTTCAGGGAGTTCGACGGGCGCATAAAACGTGCCACTGTACGCCGCACC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCCACGCGGGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 148154-151943 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTTU01000005.1 Citrobacter braakii strain C7 NODE_6_length_223299_cov_26.685591, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 148154 29 100.0 32 ............................. GGGGTTACTTCAATGATTTTGTATCATAATCA 148215 29 100.0 32 ............................. GGGGGGGCTTAGCTCTCCCTTTTTTATATCTG 148276 29 100.0 32 ............................. CAATGATTGATGAGTTAAAAAAAGCTAATGGT 148337 29 100.0 32 ............................. GGCCTTTATTCTGCCAGTGTAGCGCGACGGTA 148398 29 100.0 32 ............................. GCGTCTCTCCAACAACCTCAAATACGCTTCCA 148459 29 100.0 32 ............................. GTCAGTATGCTGACGCAGGATAACGCAGAACT 148520 29 100.0 32 ............................. CCGCCAGTTGATGATGTTCTCGGCAGTGTAGA 148581 29 100.0 32 ............................. CTATTGCGCGACAGCAGTTCTTCGCGGTTCGG 148642 29 100.0 32 ............................. GCCAGCGGCCTTTAAATCTTTAACGCGCGTCT 148703 29 100.0 32 ............................. AACGGGACTAAATAACCAGAGTCAAATGTAGT 148764 29 100.0 32 ............................. AAATCGTATCTTGTCTGGCGGGAGAACATGCG 148825 29 100.0 32 ............................. CGCGGGAAGTTGTATCTCCATCGCGGCTGTGA 148886 29 100.0 32 ............................. CAGAGAGACAACCTGATCTGACATTGGGACAA 148947 29 100.0 32 ............................. ACATGCTGATGGATTGGATTAACTGACCGTCT 149008 29 100.0 32 ............................. ATAGTTCATGAAGATGATGCCAGCGAAATCAT 149069 29 100.0 32 ............................. AACAATATTCATACATCGTAATGCCCGCTGGA 149130 29 96.6 32 ............................C TATTTGCTATTTTGGGTCTGCGCGCAATGTAC 149191 29 100.0 32 ............................. CCTAGAACAGCAGCTACGCGAACAGCTGGCAC 149252 29 100.0 72 ............................. ATGATTCATGTAATTCATAAAAGCCAGCGGGGATAAACCGACCCGCGCGGATTAATCGGGAGGGATTATTAT 149353 29 100.0 32 ............................. TTTGCGCAGACGTGCCGCGATACGCCTACGCA 149414 29 100.0 32 ............................. GCCGCAGCATTTGCTACCGGAACAGCAGGAAA 149475 29 100.0 32 ............................. AACAATCCCCAACGCTGACGGCCGCCAACAGC 149536 29 100.0 32 ............................. AGGAACGGGCCGACGCGGCTAATTCTTTGGCG 149597 29 100.0 32 ............................. GAATGCTTTACCCCACTCCATTACCAGTGCAA 149658 29 100.0 32 ............................. ACACCTCGAACGACGCGGTAATCTATGCCCGA 149719 29 100.0 32 ............................. TACTGGAGGCCGCCAAGGAGCGCATAGCAGAA 149780 29 100.0 32 ............................. CGTAACCTATCAATCTGTTAATCCTCCGCGAT 149841 29 100.0 32 ............................. TGTTTTAGATGATTAGTTGACTAATGAAATGT 149902 29 100.0 32 ............................. CAGTAATTGCGAGCCCGGCCGAAAGGTCGGGC 149963 29 100.0 32 ............................. GGCTGGGACATCATGTTCATAATTCAGGATGT 150024 29 100.0 32 ............................. CCTCATTAAATATAACACCGTCACTATCTATA 150085 29 100.0 32 ............................. TCTTAATAATTAAATGTCAGAATTGTGATGTT 150146 29 100.0 32 ............................. AAAATGATGAATGGTGGGGGAAGGGGGTTACA 150207 29 100.0 32 ............................. ACAAACAGTAGCAGGGCACCCCACACCGGGTA 150268 29 100.0 32 ............................. CGCGCCGAAAATCGGCGACCCGGTAACAGTGC 150329 29 100.0 32 ............................. TCACCGGGCTGACGTCAAATAGCCGGGAGCAT 150390 29 100.0 32 ............................. CCACCCGCAAAAAAACGGCCGCAGCCGTTCTG 150451 29 100.0 32 ............................. CTGGCCGACGCCGATTTGCAGGCCGAGCTGCT 150512 29 100.0 32 ............................. TCGATTCGTATGTCTGCCAGTTCATTAAGGGC 150573 29 100.0 32 ............................. ATTGCCGCGCTGAGCCGTCAACAATCGACAAC 150634 29 100.0 32 ............................. GCCAGTGTTAATTGTCCGCGCGCGTCCTCCAG 150695 29 100.0 32 ............................. CCTCAGCGAGTGTGAATGTTGTGGCAACGACA 150756 29 100.0 32 ............................. CCAAAAAGCGCATCAACGGCGTACGCGGCAAT 150817 29 100.0 32 ............................. TTAGGCACCTGCGGCCAGTGATTAGCCAGCAC 150878 29 93.1 32 ........T.T.................. GAGGCGAATGATGGCGGCTACTGGTCAACTGA 150939 29 100.0 32 ............................. ATGCATTCAATGAACTGGTAAAGGCCCCGAGC 151000 29 100.0 32 ............................. GGCTACGTTTTTAGCGTAACCCCTTGTTTTAT 151061 29 100.0 32 ............................. CTGTAAACGCCAAATCACGCACACTGGTCGCT 151122 29 100.0 32 ............................. CAACGTAGCTAAAGAGATCGGAGTCGATAAAG 151183 29 100.0 32 ............................. AGTACAGTATTAAAGATACTGTACCCAACGTT 151244 29 100.0 32 ............................. CGACATAATAACAACCGAGAGACATGGCAAAT 151305 29 100.0 32 ............................. GGATTTAACCATTGCTACGATACCTGGCTGGC 151366 29 100.0 32 ............................. CGATCTGCCCCCTTCCCGGGTTGATAATGTTG 151427 29 100.0 32 ............................. CATTCCCTGCGCTATAGATGCGCGATGGTGTG 151488 29 100.0 32 ............................. TAATGCAATGCCGTGTTTTTACGCTATATTCT 151549 29 100.0 32 ............................. CGCGTGTTGGAAATAGCACTGGCAGCACTAAC 151610 29 100.0 32 ............................. CGCCGAGCCGAGGGGCAGGCCGCAGCATTTGC 151671 29 100.0 32 ............................. TTCCTGTTTTGGGGTCTGTGACGTATCAGGAC 151732 29 100.0 32 ............................. CGCATCGATATCCTTCTTGTTCCTAATTTTCA 151793 29 96.6 32 ..A.......................... TGCAGGGAGCTGGCGGCTGCGAATGTGGGACT 151854 29 100.0 32 ............................. ACCAGTGGTTCTCCTCCTTTATGCTGCGTATC 151915 29 93.1 0 .........................T..A | ========== ====== ====== ====== ============================= ======================================================================== ================== 62 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAGGAAGTACTGGCTGCCGGGGAAATTGAAATCCCTAAACCTTTTGCAGATGCCCAACCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCAATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCTTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : ACTTTGAAAGCAGAAATATTATGTGGTTGGATGGGTTACGAGGATTTTCCCGCTTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCGTCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //