Array 1 484753-482525 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZA01000002.1 Pigmentiphaga sp. D-2 D_2_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 484752 29 100.0 32 ............................. TGTCCCGTGAGCACATCGGCGTTCTGGGCATC 484691 29 100.0 32 ............................. CTGCGCCTCTACGGCTGGGGCGGCGGGGCGGT 484630 29 100.0 32 ............................. CGTGGGAATTATTGCTGCAACAGGTCTCGTTC 484569 29 100.0 32 ............................. ATCCCTGGCACAAAGCCCGCTCATAACCTCAC 484508 29 100.0 32 ............................. GCCGACTACAACGGCGACGGCGTGGCCGAATA 484447 29 100.0 32 ............................. TCGCCATCCCCGATGATATCGTTGCGCCGCCC 484386 29 100.0 32 ............................. CCCCCTGCGGCAACAGGGGGCGGGATACAACG 484325 29 100.0 32 ............................. CCAAACTCGACGGACTATGAGGAAATCATGGC 484264 29 100.0 32 ............................. CCGGACCAGTACGACACCGCCATGCGCCAAGC 484203 29 100.0 32 ............................. GTCTTTTCCGCAAATTCGACGTGCGCCGCGTC 484142 29 100.0 32 ............................. CGCTTCTGTTCAGATGTCGGGGCGCGACCTTT 484081 29 100.0 32 ............................. TCGGACAGCCATCGCTCGCAGATGGAAATGCC 484020 29 100.0 32 ............................. GGCGGCGAGGACGATCTTTTGATCGATCCGAG 483959 29 100.0 32 ............................. CTCCTCGAACGCTGCCCAGGGTTCATCCGGGA 483898 29 100.0 32 ............................. CGCCCCCTACCAAAATCAGACCTAGTACGATG 483837 29 100.0 32 ............................. CCCCACGGCAACGGGAGCCATGGCCGGGGCGT 483776 29 100.0 32 ............................. TCCGCCTGCCCATCGAGTTCGTGAACCTGGCC 483715 29 100.0 32 ............................. CGACCCGCTGTACCCTCGCCACGTTCCTGGCC 483654 29 100.0 32 ............................. CACGCCGGCGCTTCCCTGCCATGAGATTCAAC 483593 29 96.6 32 ............................T AGCGCCGCGGCCGCGCTTGGACCCCACAAGGA 483532 29 100.0 32 ............................. GCACCCTGCATGTCGCGGAACAACTCGATCAG 483471 29 100.0 32 ............................. CTACACCACGGCCGGCAGCGAAGGTTCCTACG 483410 29 100.0 32 ............................. CTGGCGCAGCAGGAGACCGAGAATGTCATCGA 483349 29 100.0 32 ............................. CCGCACCACCAAGCGGCGCTGTTCCGTCGCTT 483288 29 100.0 32 ............................. GTGGGATTCAGCGACAAACTCGTCACCCTGGC 483227 29 100.0 33 ............................. GAAAACAAGAATTACTCCACGTTCGCCCTTGCG 483165 29 100.0 32 ............................. TACAGGGGGATGTCGATGGTCATGGCTGCTCT 483104 29 100.0 32 ............................. TCGAACTGGGCCTCCGGGTCGCGTTGCAGCAC 483043 29 100.0 32 ............................. CTGCTGATGCGGGCGAGGACGGGCGCGGGATC 482982 29 100.0 32 ............................. TTCATCGGTCACAAAGAAGATGAACTCGAGCA 482921 29 100.0 32 ............................. CGGATGGTTATCGAACGAATCACATTGCACCT 482860 29 100.0 32 ............................. ACCATGGCGGGTTGACATGCGCCGCATTCGCA 482799 29 100.0 32 ............................. GCCGTGGGCGGCCGGGAAACCGAGGCCAACGC 482738 29 100.0 32 ............................. ACACGTCGCCGTCGCTGGGCCACTCCGAAGTA 482677 29 100.0 32 ............................. GCCCGGCTCAGAGTGCTGGTGGGGATGCCGCA 482616 29 100.0 33 ............................. CATTGCGGATGCCGGTTGGTGCCGCAGGCGCCC 482554 29 93.1 0 .....................G......A | C [482531] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.7 32 CTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : CTTGGACGGATCATTCCCCTGATCGACGATGTGTTGGCCGCTGGTGGTATCCAGCCGCCCGAGGCCCCTCCTGAATCCGTACCTCCAGCCATTCCGAATCCAGAAAGCGACGGCGACGTCGGGCATCGAGTCGCTGATGAGCTTTCTCGTGGTTGTCACCGAGAACGTCCCGCCAAGATTGCGGGGGAGATTGGCCATCTGGTTGCTCGAGGTCCGAGCCGGTGCCTATACCGGTGATGTATCGCGCCGTACACGGGAAATGATCTGGCAGCAGCTCGATTCAGGGTATGAAGACGGCAACATCGTGATGGCTTGGGCCAGCAACAGCGAATCTGGCTATGACTTCCAGACGCTTGGGGCGAATCGCCGGGAACCGGACGACTACGATGGGTTGAGGCTGGTTGCGTTTCTTCTGCCAGAGGGGTCAACTCTTTAACAGAAAAGTTGGTGGGTTTTTGGCATCCGATTTTTCCCTTTGAAAACAATCGGTTATGTTTGGA # Right flank : TTCGAGATCAGCCGTCGAATGGGTTCGTTCGAATGCTCCCGCTCAGGCTGGGCATGAGTCCATGCCTCCTCACTGCCTGGCTACTCCACCAGCTTCGTCGGCAACAGCACCTCGAACGTGATCCCTTCCTCCGATTTGCCCGCCGTACCGCGCTGCGAGCTGAAGTAGAGCCGGGTGCCGTCGGGCGAAACGGCGGGGCCGGTGATCTCGCTGTCGTCGTGGCCGACCAGCCGCATCACGGCCTGCGACGTGCCGTCGTCGCGCAGCACGCCGATCTCCAGGTTGCCCGCGTCCTCGGCCACCAGCATTTCGCCGAAGGAGGTGATGGTGATGTTGTCCGGTTCGTCGATGCTGTGGGTGTCGGCCGGGCCCAGTTTGCCGTCGAAGATGACTTCGAGGGTGCGGTGGGCGGTGTCGTAGGCCCAGATGCGGCTGTTGCGGGACGTGACGAAGAATACGATGCCGTTGAAGAACCAGATGCCTTCGGCCTTCTGGAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 488310-486387 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJZA01000002.1 Pigmentiphaga sp. D-2 D_2_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 488309 29 100.0 32 ............................. CGACAGGAATGGGTTGACCTTGCTATGAAGGG 488248 29 100.0 32 ............................. AATTCGCCCCTTTATTTTACCGGAAAAACAAC 488187 29 100.0 32 ............................. CGCAACTTCAGGCCTTCGAACTTCAGCCAGAG 488126 29 100.0 32 ............................. ATCAACACGGAGCCGATGACGATAGCGGAGCT 488065 29 100.0 32 ............................. ACCTCGCGCCTACCCTCGGCAACCATCGTGGC 488004 29 100.0 32 ............................. CCCGTCAATCGGGCAGTGAACGGAGCAGCCCG 487943 29 100.0 32 ............................. CCAACACCGAAAACCTACGGGCCAACACCGAG 487882 29 100.0 32 ............................. TCAGCGGAACTGGATCGACGCTTGCCATGGTG 487821 29 100.0 32 ............................. GGTGGTATCGCTTTCACGATCGCGGACGGCGC 487760 29 100.0 33 ............................. TATTATTTACGGTAATTGTTCCGGCCGCGAGAG 487698 29 100.0 32 ............................. CCCTATCAACAGCTATCACGGCCGTGGCGGCT 487637 29 100.0 32 ............................. CCAAGCCGGCACGGCCTCGGGTGCCTTGCAGA 487576 29 100.0 32 ............................. ATGTCCACCCAGGTCATGGCATATTTCTGCAA 487515 29 100.0 32 ............................. ATAAACGAACAATATGAATGTAGTCATACCTT 487454 29 100.0 32 ............................. TACGATCCGGTCGACACAACCCGGGTCTGGCG 487393 29 100.0 32 ............................. TGCTCTGCGTCTGGTATCGGCCGGACGGGAGC 487332 29 100.0 32 ............................. CCCCATTCATTGCGAACATCAACCGGGGCCGG 487271 29 100.0 32 ............................. ATGTTTTCTATAGCCTCGACAAGGGATGGACA 487210 29 100.0 32 ............................. TTCGTCCCAATGGATTTTGTGGGCGACATCGT 487149 29 100.0 33 ............................. CGATTTGCAGGGTGAGGCCCGGTTTACCGGGTA 487087 29 100.0 32 ............................. TTCAGCCAGGACAACCACATGGCCGCGAGCCT 487026 29 100.0 32 ............................. TGGTCAACCAGCTCAGGTCGTTTGACCATGCC 486965 29 100.0 33 ............................. CTGAACGAAGGGCGGCTGCCGAAACTGTCCACC 486903 29 100.0 32 ............................. GCCTACCTGCTCGACATGCAGAGCGCCCGGGA 486842 29 100.0 32 ............................. TCCAGGCCAAGGCCGCCCGCCAGGGATATGCG 486781 29 100.0 32 ............................. CCGCCACGCTGTGCATGCTGGAACGCCTGCAG 486720 29 96.6 32 ............................A AGAGAATTGCTGGCGTCGAGCGACAGGTCAAG 486659 29 100.0 32 ............................. CTCACGGCGAGCTCTTCCGCGGCGTTCACCCA 486598 29 100.0 32 ............................. GCAAGGTGGTGAGCATCACCATCACGGACCCC 486537 29 100.0 32 ............................. GCGCTGAATTCGACGCTGGGCAAGATGGCCGC 486476 29 100.0 32 ............................. GAGTTCGGCGACGAGTTCGACCGCTCCGTACA 486415 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : CCGAGACCGTCGCCGCCAACAAGGGCATCGGCAACGTGATGATGATCGCAAGCGGCAACTTCGACGTGCCGCTGGTGTTCGCCGGCCTGTTCATCCTGGCGGTGCTGGGCGTCGCGCTGTATGCGGTCTCGGCCCTGATCGAAGTCAGGCTGACAGGGTGGGCGCAGCGCAAGAACGACATGGCCATGGCGTGATGCGGCCGGAGATTAGACGTCTCATGAGCACCACGGCTGGAGTTGGGCGTCATCAACCGCCGGTTGCATGATCGAGGAAAAAGCCGCCTTGAGTTAAGGATGTGAGCGGGCTGTGCTTGCGGATGGAGCCTGGGTTCTCATTCCATATGGGACGTCCAGAGCTCGCATTTGTTGCGGCTGGGAGCTGATTGGCTATGATGGCTTGGGGACGATTTTTTTATTTTTCAGCTGGGTCTGGTTCTTTAAAAAATTGGTGGATTTAAAGAGGCCGATTTTCTCTTTTTAAAACAAATGCTTATGTTTGGT # Right flank : GTCGGCTAGATGGGAAGCGTGGTGTAATCAAACACGCAACTGAGCGGCTTCGCGACACCAGAAGTGCCGCCAGCATCTGCGAGCCAAACGAAGTGAGCGGCGTAACTGCCGAGCCGGCCTCCGTCTTGTCGGGAACTACAATATAAGTGCCCTCGCAATGAATCCTGGAGGACGACCATGCGACCATCCGAAATTCTTGCATTGAAACGAAGCGCGGTACGCGAAGCGGCAGCTCGTTTCAAGACAGCGAATCCACGTGTCTTTGGTTCGGTTCTACACGGTACCGATCAGGACGGTAGCGATCTTGACATCTTGGTCGATGCTCTGCCCGGCGCTACATTGTTCGACCTCGGCGGCCTCCAGGACGAATTGGAAACGCTGCTTGGGGTGCATGTCGACTTGCTTACCCCGGGCGATTTGCCCATGAAATTTCGGGCCAAGGTTCTTGCGGAAGCCCAACCCGTATGAATCGCCTTCCTGACTATCTCGATCACATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //