Array 1 21672-23834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUU010000009.1 Erwinia amylovora strain EaB-110 Ea_B-110_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21672 29 100.0 32 ............................. TAACTTCACTTAACTTTGAGAGCTAGTTTTTT 21733 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21794 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 21855 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21916 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21977 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 22038 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 22099 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 22160 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22221 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22282 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22343 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22404 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22465 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22526 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22587 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 22648 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 22709 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22770 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22831 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22892 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 22953 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 23014 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 23075 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 23136 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23197 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23258 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23319 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 23380 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23441 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23502 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23563 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23624 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23685 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23746 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23807 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34752-36857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUU010000009.1 Erwinia amylovora strain EaB-110 Ea_B-110_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34752 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34813 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34874 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34935 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 34996 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 35057 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 35118 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35180 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35241 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35302 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35363 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35424 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35485 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35546 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35607 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35668 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35729 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35790 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35851 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35913 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35974 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 36035 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36096 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36157 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36218 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36280 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36341 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36402 29 100.0 31 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGA 36463 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36524 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36585 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36646 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36707 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36768 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 36829 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCCCCCCCCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46321-46649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUU010000009.1 Erwinia amylovora strain EaB-110 Ea_B-110_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46321 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46381 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46441 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46501 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46561 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46622 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //