Array 1 1587969-1585743 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKR01000001.1 Pectobacterium versatile strain WS2152 Ga0215728_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1587968 29 100.0 32 ............................. GAATTTTTCTTGTATTAATCGCACTTGCTGAT 1587907 29 100.0 33 ............................. GTTGCTTGTCATTGACGCGTTGAAAAATAAGAC 1587845 29 100.0 32 ............................. ATATCATCTGTAGTTAATCATTACAGAAACTA 1587784 29 100.0 32 ............................. CCGTAATCGCTATTACTGACGGTTTTAATCTT 1587723 29 100.0 32 ............................. GCGAGGTTCTTGAATTCGTGGAACTCGTCAAC 1587662 29 100.0 32 ............................. GAATGAAAGAGAAAATATGCTGGCAGTTGCAG 1587601 29 100.0 32 ............................. AATTGAACGTCACGCAATACACTATCGCTGAC 1587540 29 100.0 32 ............................. CACAATCAACTTTGATGTAAGTGATTTCACCC 1587479 29 96.6 32 ............................A CTTGTCCTACTGCAATCATGTTAGGATTGGAA 1587418 29 100.0 32 ............................. GGTTTCATACAAATCATTCGCTAACTCTAGCC 1587357 29 100.0 32 ............................. CGCGCGTCAAAATACTGGCCTCGCGCTGAGCG 1587296 29 100.0 32 ............................. CTGGGACAGGCGTAACGTTAGGTTATAACCCG 1587235 29 100.0 32 ............................. GCATACAAGGCCATTTGCAGCTACGGACGCCG 1587174 29 100.0 32 ............................. GATTTGAAGTTAAACGCGAATCTCGCCATAGT 1587113 29 100.0 32 ............................. ATGCATCTATGATACTAAAACAATCTCAAACA 1587052 29 100.0 32 ............................. GTACTGATGGTGCGATCTATTACATCGAATCT 1586991 29 100.0 32 ............................. GAATACATACTAGGACAACATTCAGATTCATA 1586930 29 100.0 32 ............................. AGCGTGGTGACGCTCCCCAGTAAATGGCGCGT 1586869 29 100.0 32 ............................. CTCATCAAACGAAACAGAACGCAGTGTGTAAG 1586808 29 100.0 32 ............................. ATTTTTTCCTGATATCCAGTTGGGGTGGAATT 1586747 29 100.0 32 ............................. AGTGGTGTGCATGGGATCATGGGGGTTTAGAT 1586686 29 100.0 32 ............................. CACACGGCGCAGGTTTAATTAAATGGGTTGAG 1586625 29 100.0 32 ............................. TTTTCCCGTATGAAATTGGTTGCCAATGGCAC 1586564 29 100.0 32 ............................. GCGCAGAAGGTTGTCACTATGACAATCTACGA 1586503 29 100.0 32 ............................. TAAGTTGCTTTTTGCATCTGTCGTAGTTTGGT 1586442 29 100.0 32 ............................. CTTGGAAGAAAATACAGAATAAGCGAAGCCAC 1586381 29 100.0 32 ............................. TAATTGTAAAACAAATGCTCGTCGCATGTGGC 1586320 29 100.0 32 ............................. TGTTAATTTCACAATGCCCACAATGTGAGCAT 1586259 29 100.0 32 ............................. GGATGGACATTAAAACACGCTCACATGCCTGT 1586198 29 100.0 32 ............................. GCAATTTATTAATTATTAACGATAAAACAAAT 1586137 29 100.0 32 ............................. AGATTGCGGCGCTGCTGGCTGATGAGACCTGG 1586076 29 100.0 32 ............................. CGTTCCGACTGGAAAATGATGCTTTCAGAAAT 1586015 29 100.0 32 ............................. CGACCGCTCAGGCCGTAAACAGGGTTGCAGGT 1585954 29 100.0 32 ............................. CCACAAACATAACCACTTTGACCCGTATATTC 1585893 29 100.0 32 ............................. TGAGGGGGAATGTCAAAAAATGTAGTGATAAC 1585832 29 100.0 32 ............................. CTATTCCTGATTCATCAATCAAACCCTTACTA 1585771 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATGTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCTCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1593168-1590165 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKR01000001.1 Pectobacterium versatile strain WS2152 Ga0215728_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1593167 29 100.0 32 ............................. GGAAGTTAAATTCTTTGTGATGAATAGCCGCC 1593106 29 100.0 32 ............................. CAATCTGCTGGCTGAAATTGGTGCATTTACTT 1593045 29 100.0 33 ............................. GGCATATGGCTCAGCTTCTGATGGAGTTGGATA 1592983 29 100.0 32 ............................. CGATTGGGAAGCATGGCAGGCCAGCCGCGCGG 1592922 29 100.0 32 ............................. AGCGAGGGACTCAACCATCGCTGTTACTTCAC 1592861 29 100.0 32 ............................. ATCAGTTTCGCATCATGGCTAAGGTTCTGCTC 1592800 29 100.0 32 ............................. CATAGGGATGATCGGGCACCATCCATGTGTAC 1592739 29 100.0 32 ............................. TAACGGGCGAAATACATACCCTCTTCTTCACA 1592678 29 100.0 32 ............................. CCTATTAACCTTAACTACATTTTCATTACTTT 1592617 29 100.0 32 ............................. TATTCATGTTATTTACCAGTCCCCACCCATCA 1592556 29 96.6 33 ............................A GATGAGGATGTTTGTGTAATTGATATTTCAAAC 1592494 29 100.0 32 ............................. ATCGCGGATATTGATCATGCTGAAAAACTGAA 1592433 29 100.0 32 ............................. CATATGCGTAGCTTTATTGATGCGTACAGTAA 1592372 29 100.0 32 ............................. AAATAGAGCGAATGAGATTAACCCGAATGTCT 1592311 29 100.0 32 ............................. ATAATCGGATAACAGACCAGCCATTTTTTGCC 1592250 29 100.0 33 ............................. CGCTGGCCGATCGCACACAGTGGTTACGCAACC 1592188 29 100.0 32 ............................. CTCGGTGTCATTCTCATCAACACCGAGGTTGT 1592127 29 100.0 32 ............................. CAGTGTGATTGCTCAATTTATGGAAAGAGTGG 1592066 29 100.0 32 ............................. TTGCCTTCCTCGTCGAATTCAACTAATAGAGC 1592005 29 100.0 32 ............................. CCCTAAAGGAAAACATCGGCCCTTTCTGGAAG 1591944 29 100.0 32 ............................. GGCACAGGAGTCGAAAAAAAGAGCCAAATATA 1591883 29 100.0 32 ............................. TCACGTAAACCTATACGATATGCTGTTTACCA 1591822 29 100.0 32 ............................. CCAGTCCGCTATAGCCAACTCAGCCGTGAAAA 1591761 29 100.0 32 ............................. GGTTTTTATTGGATATACCGCATCGCTGAACG 1591700 29 100.0 32 ............................. GATATGAGCGCAGCTTTGCGCATGTCGGTCAT 1591639 29 100.0 32 ............................. TGCATCTATCGATGACGAACCTCCGTTCGCTG 1591578 29 100.0 32 ............................. GTCTACCGGATTCCACGCAGAACATACAATGC 1591517 29 100.0 32 ............................. TAGTACCTTTCAACACTTCAACAACTCCACGT 1591456 29 100.0 32 ............................. CGTCTGGTGTTTGGAAACCGTGGAAAGCAAAC 1591395 29 100.0 32 ............................. CCATCCTCATGGCGCTATGTCTTGCGGCCGGT 1591334 29 100.0 32 ............................. CCCGTACCAGTGCAGCGCGAACGTGTGGACAA 1591273 29 100.0 32 ............................. TAGGCCTTCTCTATCTCATAGAGCTGGGAACC 1591212 29 100.0 32 ............................. TTTAGATTTGTTACTTTCTGCCTGAGCAAACA 1591151 29 100.0 32 ............................. CGTGCTGGTGGCCGTTCGCGGCCGTGGCCTTG 1591090 29 100.0 32 ............................. CGATGAGCTTTGCAGATTTTATCGCAGCACTT 1591029 29 100.0 32 ............................. GTCGTATCAATCAGCTCGTAGCGCTCCTGATC 1590968 29 100.0 32 ............................. CCTAACGCGCCGGCCGCCGTAGTGGAGCTTGT 1590907 29 100.0 32 ............................. AATGCAAAAAATGCCAATGTCGCTAAACACGT 1590846 29 100.0 32 ............................. GCATGGACTTTGCCGCACAGGCCGACGCTATC 1590785 29 100.0 32 ............................. ACGGCATTCTCTAATCGTTTTCTCAGGTATTC 1590724 28 79.3 14 .................CC.-.....ATC ATTTCTGATGTGAT Deletion [1590683] 1590682 29 100.0 32 ............................. CGAGAAATAGCAGAAATGGACGGCAAGAAAGC 1590621 29 100.0 33 ............................. CTAAACGCGGTGAGCTCGATACGCGTGAAGATG 1590559 29 100.0 32 ............................. TGAGTTCGAGGTTTAATCATGAAACTACACCC 1590498 29 100.0 32 ............................. AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 1590437 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 1590376 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 1590315 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 1590254 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 1590193 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2952485-2953177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEKR01000001.1 Pectobacterium versatile strain WS2152 Ga0215728_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2952485 27 85.7 33 T.........-...C.A........... TCGATCCCAAAAAAGGCAGCGCCACTGCCTACG TA,G,G [2952488,2952491,2952501] 2952549 28 100.0 32 ............................ TGATACTTATGCCACACGCGCTGATTGAAGTT 2952609 28 100.0 32 ............................ GCGTGGTGATGCCCCGCTGACAGCTGACATAT 2952669 28 100.0 32 ............................ AGAATGAAATAATATCGATAGTGCTCGCGACG 2952729 28 100.0 32 ............................ AGGCACAATTCTGTTGTTGTTTTTCAGAGATA 2952789 28 100.0 33 ............................ CATCTATGCTTTCACCTTCATTTATCTCCGTAT 2952850 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 2952910 28 100.0 32 ............................ TTGAACAGATTGCATGGCGCACAGGCTGGGAA 2952970 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 2953030 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 2953090 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 2953150 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGAAATACTGGCGCAGGTCACCGCACTGCGTCAGATAAACGTCGGGCTGATGCTGGTGTTCATCAAGCACACCTCGGCGGCACTAACGATTAACGAAAATGCCGACCCTACGGTGCGGCAGGATTTTGAGAGTTTCTTTAATCGCTTGGTGCCGGAGGATGAACAGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGCAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCTGCACCTGGCAGGGTATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACGCCAGCGACGCATCCTGATAAGCATCTAGCTGCCTGTACGGCAGTGAACCCTCAGAAAGCTGATCTCAACCAAGGCGCATGTTTCTAAGCTGCTTATACGGCAGTGACCTTGGTCGGAAAGTCCGAAATCTTCATGGGTTT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //