Array 1 2937415-2938992 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018082.1 Nocardia mangyaensis strain Y48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 2937415 29 100.0 32 ............................. TGGTAGCCGCCCTCGACCTTGTCCCACAGGCG 2937476 29 100.0 32 ............................. ATTTGTGGCACTACTGGTTTCGAACTCACTAC 2937537 29 100.0 32 ............................. GTCAGCGGCATGTCCAGGGGTAACCGCGCCCT 2937598 29 100.0 32 ............................. CGTCGAGCACTCCGGCAGATCTAGCCATCCGA 2937659 29 100.0 32 ............................. CCCGAACCACCACGGCCGTATGGGCTTTCGAG 2937720 29 100.0 32 ............................. TGCTGGACGACCCCGAGGCGCGCTCGGAAGTG 2937781 29 96.6 32 ............................T TCTTCGGGCGCGAACTCCTTGTAGAAACTGTT 2937842 29 100.0 32 ............................. AGGACTGGTTCGCCGCGTTCATGGAGGACTGT 2937903 29 100.0 32 ............................. AAGAAGCCCACCGAGGGCGAGCCTGGCTGGTA 2937964 29 100.0 32 ............................. GCCAGCAGCTCGCTGGTGTTCATCGGAGACTC 2938025 29 100.0 32 ............................. GCGTTGAAATCGCTCTCGGTGTTGAAGTAGCG 2938086 29 100.0 32 ............................. ACCTGCTGACCGGGATCGTGCGATGCGGCGTG 2938147 29 100.0 32 ............................. CGGACGAGGCCGAGCTCCTCGATCAGCAGCCC 2938208 29 100.0 32 ............................. CTCGCGAACGCCTTGATCTCGCGTGGCGACAG 2938269 29 100.0 32 ............................. AGCAAGCGTTGTGGATCAACGAACAGTGCGAC 2938330 29 100.0 32 ............................. GCGTCCTGCCAGTCGTAAACGAACTGGATGAC 2938391 29 100.0 32 ............................. GGAGCGATGGCGTCGAACGTAGCTCCCTCGGG 2938452 29 96.6 32 ...T......................... CGGGACGTGCTGGGGCACCTGCGAGACGAAGT 2938513 29 100.0 32 ............................. GGGCGCCCGCTGCGCGGACCGAAGGCGACCCG 2938574 29 100.0 32 ............................. GAGGCCCAATCCAAGAGCTGGGACGCAGCGCT 2938635 29 100.0 32 ............................. CCCGCCGGGGCGCTGATGTGGCACATCGACCA 2938696 29 93.1 31 ...................A........T CAGGCCAGGAACTGATCGACTACGCCGACAC 2938756 29 96.6 32 ..........................T.. TGGATCTGGCGAACCTCCATCATCGGCAGGAA 2938817 29 96.6 32 .............T............... CAGCCCGACGCCCTGCTCACTGCACCACTCCG 2938878 29 100.0 57 ............................. TCGGGCCACGCCTGCACGTCGGCGACGGTCGGGTGCTCCCCGCGACGCGCGCCCCTA 2938964 29 79.3 0 CAT.A..G....................T | ========== ====== ====== ====== ============================= ========================================================= ================== 26 29 98.4 33 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : ATCGATGCCGCAGAACACGGCGTATGCCTGTGTCACTTCGTGTTTCCTCGTCGAGTGAGAAGCCGCTGGCGGAAACGGTCACCGATCGAAGCGTCAACGCCCGGCACCCACGTTACGAAGAGACCTATGTAGCGGCCCTGTCCCCATCAGATCAGATCCATACCTCGTCATAGCCGCTTGCCAGCGCGAACACCGTACGTTGACGGCATTGGCATTGAACCTGGGTCGGTGCACATCTCCAAGGAAGCGGGAAATCGCATGGGATGGGAACCGGGTCGTCGAGTTGGTCGCCTACGATGACGGGATGCGGGCCTGCCGCGGTTGCGACCCTGCGTGCTTGTGGGGGGTGCAGGGGTTCGACTGGCTTCGGGCTGGCCTCTGGGCGAGTCCTGAACGTCGCGCTCGGCGTCGGGGTGACGGTGGAAGCCGAGAGGGCGAGGACGGGATCGAAAGTGAATGAGAATCGGTTGGTTGCGCTATAAAGGTGCTGGTCAATTGGT # Right flank : TACCAACCGCCACCGGGGCGCGCGGCTTCCAATGCTCGGCATCCTTGGGTCTAGGTGGGTTGACTATCAGAACTCGGTGCGGATGGACACACTGCTGCCGCGAAATTGGACCCGGTGAAGCGTTGGCGGAGAGCTGTGACTTCCGAGTCGAGAGGTGCTCAAACTGGGCTTCTTGTGAGCTCGCGCCGTGATGGTGGTTTGAGTAAGGCCGTTCAGAGCAAGGCCTGGTCGCCTGCTCATGAGCAGGTTTGTGGTAGCAGGAGTTCGGTCGAGTTTTGAAGGGGGAGTGTAGTTGTCGGTGGGTATGGGTAGGGTCGGCTCTCGCGTTGATCGGACGGTTAGCGAAGGGGGCGTGATGGTTTCGTCGGCGGTGTTGTCGGCGTGGGCGAAGAGTGATCGGGCGGGTGGCAGTTTGTCGCTGTTTCGGCATTCTGCTGATTCGGCGGCGGTAGCTGGTCTGGTGTGGGATCACTGGTTGCCAGGCCATGTCCGGTCGTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2949005-2951337 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018082.1 Nocardia mangyaensis strain Y48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================================================== ================== 2949005 28 75.9 33 CC.T......-..ATC............. TGCTGGATCATCGGTCGAGGGCGTGAGCATGTC 2949066 29 89.7 200 C......................A....A GCAACGTCGCAAACGCTCAAAAGGCGTGAAGTGCTCCTTACGTCAGCGAGGGAGCACTTCGGCTTCTCCGCAGCTTTGGCGAGGCCTGCGACGAGCCGGATTGAACTGGTCATGGTCGGCGATCGGAGTGTCGTGAGGGTCTTGTTTGAAAGTGAATGTGATTTGGAGGTTTGCTCTTGTGAATATGCAGGTCAGTTAGT T [2949090] 2949296 29 100.0 32 ............................. GCGCCGCCAAGCTGACCTCGATGTTGCGCGAG 2949357 29 100.0 32 ............................. GGTCCGGGCCGGTGGCGTATCGGTGACCCGCT 2949418 29 100.0 32 ............................. CCGGGTGCGGCAAGGAGATCGACCGCGGTCTG 2949479 29 100.0 32 ............................. TACACAGAGGAGATGGTGTGGACTGGATTCCA 2949540 29 100.0 32 ............................. GTTTCACCCGATGCAATGAAATCGTCTACGAA 2949601 29 96.6 32 ............................G TTCTCAAACTGCTAGGTAGCGAGAGCTTTCCT 2949662 29 100.0 32 ............................. CCGCACGTCCCTTCGGGGATCGATGATCTGGC 2949723 29 100.0 32 ............................. CCGATGATGTGGCGGGTACCGATATCGCCTAT 2949784 29 100.0 32 ............................. TGAAGCCGGACGCGACGCCCGAGGCCCCGGAG 2949845 29 100.0 32 ............................. GCCGTCTCGACGTGGGCGCGTGTTCTCGCCGA 2949906 29 100.0 32 ............................. GCCAGGAAGACGTCGTCGAGGATGCCGTCGAG 2949967 29 100.0 32 ............................. CGAGTGCGAACCCCACACCCATACCGGCCAGG 2950028 29 100.0 32 ............................. CATCGCGCCTACCTGACCGCGATTGGCGTCAC 2950089 29 100.0 32 ............................. GCGTCGATCAGTTCCGGGTCGGACGGCGCACC 2950150 29 100.0 32 ............................. CCGTACCACCAGATCGGGACGTCGCCGCGGTT 2950211 29 100.0 32 ............................. CGTGTATGAGACACGATCATGGAGCGCAGGTG 2950272 29 100.0 32 ............................. CGTGTATGAGACACGATCATGGAGCGCAGGTG 2950333 29 100.0 32 ............................. CGCGCGTTGCGCCGCACCAAACTCGATGAGCA 2950394 29 100.0 32 ............................. TACTTCGATCCGGACGTTCTCGACGAGGTGTT 2950455 29 100.0 32 ............................. AACGACATGCGGATCCTGTTCACCAACGGGTC 2950516 29 100.0 32 ............................. TGTGCGGTGCCGATGAACGGCCATCCGTTGCA 2950577 29 96.6 33 ............................A TGGCGGGCACGATGTGGTTCGCGGCGTCGCCGA 2950639 29 100.0 33 ............................. GTCTCCAAGTCCAACGTGCTGTTGGCGAGATTG 2950701 29 100.0 32 ............................. ATCCACAGGAACCGCTGGCGCGGGTTGTCCGG 2950762 29 100.0 32 ............................. TCTGTTACGGGGTAGTGAGGTTGGTGGGCCCT 2950823 29 100.0 32 ............................. TGTTGAAGTAGGCGATAAAGACCGGAGGGAAC 2950884 29 100.0 32 ............................. TCCGCGGCTGCTGCCCGGTGTGCGAGAAGGAC 2950945 28 86.2 32 ...............C....A.-.G.... GTCTGCGAGCTGGTGTCGAAGCCGAACGTGCT 2951005 29 100.0 32 ............................. TACATCAACGGCGAGAAGCTCTCCAACGATCA G [2951026] 2951067 29 100.0 32 ............................. GGGCCGGCCTCGAGCAGGACAGTCGGTGTCCA 2951128 28 96.6 33 .....-....................... TCCAGCAAACTACACCGGCGCACGCGACAGGTC 2951189 29 100.0 32 ............................. AGCTGGATCGTGCGGACGTGATCGCGCCCGGC 2951250 27 86.2 33 .....-...........-.........TT GGCTCACGGAAGGTCATCGGCGGCATTTCGGCC 2951310 28 79.3 0 .....G..T....A...T....-.C.... | ========== ====== ====== ====== ============================= ======================================================================================================================================================================================================== ================== 36 29 97.4 37 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : ACCCACCACTCGGGCGTGGGCCCTCGGTTCTGAGAGGGTCCCTGATCTCGCCACCCATCTATGCGCGCCGACTTGTGCTGAATCTCGCGGCGTCAGCTGGGTGCCTTCTCGTTTCAGCGGGTGTGTGGATGCTTTCCGGCTCTGGGCGAGCTAATGGTTCTTGGCACGAATTGCTGGTGAATCCCCTCTCGATGTGGGTGATTGGCAGCGCACTGTGGCTGTGTTGCATCGCCGGGCAAGTCGCTGGACGAGAGGCTGTCTACGGGATTCGGTGCCTCGTCATCTCGCTCGTTCTCGATGGACTTGCTATGCCACAGGACGTTGATGAGTGAGCTGTCACCAGGTTCGAAATTGCGAGGACGGTCGCTTGTTCGACTCGGAACAGGGGCGGGAGCGAACCCGCCGACACCGCCGAACTCGCAAGGTGTTGACGAACCGCGGGCCGGGATGGGCTCGACCCATGCCTAGCGGTACTTTGAAGCGGGGTCGTACAGCGAGTC # Right flank : CCACAGAAACTCCACACTTTTGACCGGAATCAATGCGAAATTACGAGAATCGTTCAGAAGTGTCGGTTCGTGAAAAAGCCTGGTGCTGAGTACTATTGGGCATTAGTGGGCGAGGTCTGGGCAACCGGAACGCGCGCCAGGTGGTCGCAGGTTCAAATCCTGTCAGCCCGACAGAAGGAAACCCCCTCTGACCTTGGTCGGAGGGGGTTTTCTCACTCTCCCACTACCCGGAGAGCGGGACCAGAACGGGACCGTAGGTGGTTCGACAGCTTGTCGCCCGCCCCGGTGACCTCGCGCTGATCCGGGTGGAGGTAGCGCTCGGTGGTCCGGCTGTCAGCGTGGCCCGCGATCTTCTGGAGCAGGTGGAAGCTCACCCCGGCGTCTGCCGGTCATCGGTATATCGCGCTAGCGCCGCAGCGTGGTCGCGGGCTGCCGCCGCGCTGTCTGGGTGTTCCGAAACTTCTGGAAGCCGGTCATAGTGTCGACGCATCGTTTCGCGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //