Array 1 117311-116912 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSB01000002.1 Bifidobacterium adolescentis strain TF06-2AC TF06-2AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 117310 36 100.0 34 .................................... CTGCGGTGCCGCGTCTGCATACGCGTTCGCCCGC 117240 36 100.0 37 .................................... ATATTCGTGGCGATCGGCTTCATTGGCTTATCGCAAT 117167 36 100.0 37 .................................... AGGGCGAGGCGTTCGGCAATCCAGCCCAGCGCGTCCA 117094 36 100.0 37 .................................... AAGAGTTTCCAGAATCAGCTCATCCAGACCGCTCGAG 117021 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 116947 36 86.1 0 ...........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 97.7 37 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : ACGACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTGCTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGTAAAGAGCAGGGCGAGCAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCTAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACCGGTGNNNNNNNNNNGTAGCCCAAGGACCGGTGCAGACGCTTCGAGTTCCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCCTCAAATCCCGGAAGGGCTTGCGTCGCCAGACGAGCTCGGTCTTGTACGCGCCGTCGGCGCTCCCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGCCGAGGGAAGCATGCCGAATTCCCCGACCCTGGTGGTGCACACGAGGCTGATGTACTGCGCGCCATGGTCGGAATGGTGCACGAGACCGTCCGTGCCGCCATGCGAGGCAGCCCATGACATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCCGGTGTCCATGGTGGTGGCGCACGCCCATCCGACGATCCTGCGGGCGAACACGTCGGCGGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2561-3613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSB01000007.1 Bifidobacterium adolescentis strain TF06-2AC TF06-2AC.Scaf7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2561 36 100.0 37 .................................... GTGACCGCGCTGGTCATGTTCAGCCCTAACAGTTCGA 2634 36 100.0 36 .................................... GCCGGTAGGTTTGACTGCGGGAACCGCGCGATGCGG 2706 36 100.0 34 .................................... CCATCATCGATACGTTGCTTGGTAATATCGTAAT 2776 36 100.0 36 .................................... CACCACCACGGACGGGGCAAGCACAAGCCTCGCCGA 2848 36 100.0 34 .................................... GCGCGTACTCCGCAAACGTCTGCGTCTTCATGAG 2918 36 100.0 35 .................................... ATGGTCAGATCGGCGCTTGGAATCTGCTCAGGATT 2989 36 100.0 37 .................................... ACCTTTATCGGACGAATGCGAAAAATCGGTGTTGCTG 3062 36 100.0 40 .................................... TTATGATACGAGACCAACGTCCGGTAGCAGCAATCTACCA 3138 36 100.0 38 .................................... TTTATGGTCACGTCGGGCAATATCGGCGGAGTCAACAA 3212 36 100.0 37 .................................... CACAAGTCATGGACGATTACGGAACAATGGTCATGTT 3285 36 100.0 39 .................................... CCAGGGATGGCGTCGGCCAACTGGTTCCAGTTCTCCGTC 3360 36 100.0 39 .................................... TCGTCACGCCGAAATATTCAGATAATTTCAATAGTGTAG 3435 36 100.0 35 .................................... AACTGTTCGGTCAGCGAAGCCGTGCCATTGACGCT 3506 36 100.0 36 .................................... TAGGGGACTGAATCGCGGAACAGCCGACTGGACATG 3578 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : GTTGTACGTGCGCGGATCGTGGATCGGCTGATGCATCGTCGGCGTTGGAGGGGATGATGTGGTCGCTCATTCGCTGAGGCTTTCTCTGAAGTGAATGCGGTGTTGCATACCATGGCGCGCAGTACATCAGCCTCGTGTGCACCACCAGGGTCGGGGAATTCGGCATGCTTCCCTCGGCCGGCACGGTCGGCGACTCGTACGACAACGCCATGGCCGGGAGCGCCGACGGCGCGTACAAGACCGAGCTCGTCTGGCGACGCAAGCCCTTCCGGGATTTGAGGGACCTGGAATTGGCGACGTTCCGGTGGGTCTCGTGGTGGAACTCGAAGCGTCTGCACCGGTCCTTGGGCTACAGGACACCGGAACGGACCGAAACCGAGTATTATGCAAACCAAGCGGCGCAAGCCGCCCCACTATAAGGGCGGAACAAAAATCAGGCCATATCAAAAAGCTTAGGAATTCCAGTCGTGCCAGCCGGGACCGTGCATGTGGCCGCATGG # Right flank : TAGTCACACTATAAAACACTGCAATGACACGTATCTCAAAGCTTTTTGCGAGAGGTCCTTCCCCTTGTCCAGATTAGAGATACATCCCCAGAATGCCCTCACACATAAGGCCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAAGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACGCTATATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 489-1105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSB01000013.1 Bifidobacterium adolescentis strain TF06-2AC TF06-2AC.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 489 34 85.7 39 G...A.-.T.A........................ TGAGGTCAAGTCATGCATGGCTGATTTCAAGAGCGGCAA 562 35 100.0 35 ................................... TAGATAATCGTAGGGGTCGATGCTGATGGTCACGC 632 35 100.0 40 ................................... TCGTGTTAAGTGTAGCTTAATCTCGATCAGGGTGTGTGTC 707 35 100.0 36 ................................... TTCGAAACCGCAGGAGCAGCCCCAGTCGGAGCAGCG 778 35 100.0 43 ................................... ACCAGAGCCGAAACAGTCACACGGCAGAAGCTCGCCGCCTGAA 856 35 94.3 39 .............C.T................... AAAGTGGCTCGATGAGGAGCATTACTTGGTCATCCTGCA 930 35 94.3 36 ...............T.T................. ATCGGTCCGCGAGACCTCCACCAGCCTCGAGATCCT 1001 35 97.1 37 ...............T................... AACCGTCATGCCGCCCTCGACCATCGTGACCTCGTCA 1073 33 85.7 0 ...............T......A.A...--..... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 95.2 38 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Left flank : GGATCTGAACATGCGGTAGCCGCGCGGCGTGATGAACCCGCGGTCCAGCGAAGCGGCCAGCACCCTGCGGATCGGCCCGATCCTGAAACGGTCCTTGAATTCGTCGATGTGAGCGACCATCAACGCCGTGTCGGGTCGAGCCGCGCCGCGAAAAAAGCCGACGCCGTCGTCAATATCTCGTTCGCCCGCCTCAATCGCGCGACCTCGGCCCGCAAACTCTTCAACTCCGCCATCGCGTCTTCGGCCGACTGCTTGGTCTCCGCCGCGACCGTGGCGTCCGTCTTGTCGCGCCAACGGCGCAGCGTCTCCGGCGCGACCCCCAGATCCTTGGCGACCTGTTCGATCGCCTTGGTCTCCGACGAATACGAGCCGCGCGACTCGGTCGACAGCCTGACGGCCTTCGCCTTGAACTCCGGCGTGTGTCTCGTTCCTTTTGCCATGGTTCCATCATCTCCCATCGAGTTAGGGGAAATGCGGAACAAAAATCAG # Right flank : GGGATGTGGTATTCTTACGGAAGAGCACCCCCGTTACCGTCTTTTCGATAGCTTCCGAGGTGCTCATTTGATTGTGGGTGATGTTCTTGGAGGAATGAAGGCACCCATATTTCGCTTGTGGAAGCTTCCAATGCGGAATTCTCAGGGTGGCTTTTTGATTCCACCCTCAGGTAGTTCAACGATTAGCTTCAGGTGGTATGCTGGCTTTTGTGAGAGGTCTCATTGGCACCATTCGGTGACATTGAGACCTTCATCTTTGCCTTATATTCGGTTGTTGATTTTCCGTATCCTGGGCAACGTTTTGATTTCGCTTTTCCGATTCGCTTATTTGGCTTGTGTCTCTTCTACCGCTTACCGTCTCACCCCATCCCTGTACTATAGGGGGTAAAGAGGAGAGGACAATGGCACGATATGATTTTTGCCCGCAATGCGGCACTGCAAACGCGAATGGTGATTTTTGTATCAATTGCGGCGCGTCGTTGGTGACGTCTGATGATGTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //