Array 1 10237-12008 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTEB01000014.1 Serratia marcescens strain KCJ3K308 NODE_14_length_38585_cov_6.230173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10237 28 100.0 32 ............................ ATCCCTGCTCAGCGCCAGGCTGAGAATATCGA 10297 28 100.0 32 ............................ AATAACGCCACGCAGGAAACCAAGGAAAAGGG 10357 28 100.0 32 ............................ TCATTTATCCCATCCTGAACAATACCGGTGCC 10417 28 100.0 32 ............................ GTTGGCGCAACCGTCGATAAAGTCAGCGTCAC 10477 28 100.0 32 ............................ TGCTTCGGGAACAGGATAAACGGCACCGTTAC 10537 28 100.0 32 ............................ TCTACCCCTCGATCACCGCCTCTAAAAATTAG 10597 28 100.0 32 ............................ AATTTTATTTTAGGCCGTAGCACCTCGGGAAC 10657 28 100.0 32 ............................ TTTCCCCCCTCTTACCCTTCCCCTCTCCCCCG 10717 28 100.0 32 ............................ GCCAGCTGCGTCACTTTCGGCGCCAATGATCC 10777 28 100.0 32 ............................ AGCTGGCGATCTGCCTCGGGATTAATCGAGGC 10837 28 100.0 32 ............................ TGGCGAGGAACGCTAAAGACGCCCCGGCTTAT 10897 28 100.0 32 ............................ TGTTTATTGATGGGGTGTACCAGACCGACAGC 10957 28 100.0 32 ............................ AGATCGCCGGGGCCGCTCTCAGCGCTGCCGAC 11017 28 100.0 33 ............................ CGATCCGCCGAACATCCCCCTCAACCTGGATAC 11078 28 100.0 32 ............................ AGGAGGCGCTACTGAGCGATCGGGAAGAACTG 11138 28 100.0 32 ............................ TGGATACTGGCTATCACGTCAATACAGTTCAA 11198 28 100.0 32 ............................ GAGCCAGCTGCAGATTGCATCCAGATAAATGC 11258 28 100.0 32 ............................ TGCAGCAGTTCGGGGCTGGCGGTGCCGTCGCC 11318 28 100.0 32 ............................ GGCAAGGCAAACGAGTTTCGCAACGTGCAATT 11378 28 100.0 32 ............................ GTAGTTATCCATCACACAAAGCTGAGTACTTC 11438 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 11498 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 11558 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 11618 28 100.0 32 ............................ ATAAAGTAGTGGTCGTTAAAGTAGAAAGCCTT 11678 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 11738 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 11798 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 11858 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 11918 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 11978 28 96.4 0 ....................A....... | A,A,G [11998,12001,12004] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACTCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20858-23759 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTEB01000014.1 Serratia marcescens strain KCJ3K308 NODE_14_length_38585_cov_6.230173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================= ================== 20858 28 100.0 32 ............................ TGTGGGCTTGTCAGACTGGTCCCCATCGAGCT 20918 28 100.0 32 ............................ ATACGCCACAGCGACGATATTGAATGCGAAAC 20978 28 100.0 32 ............................ GATCGGCCGACGCTTTTTAGCACCAGCGCGAG 21038 28 100.0 32 ............................ CGTTTGACAGGATGGCCGCTCGGATGGATCGC 21098 28 100.0 32 ............................ AGGCTGAAAAGAAGTTACCCAAGCCGTATTTT 21158 28 100.0 32 ............................ AAACAGAAATTGAATTGGTTGTAACTACTATC 21218 28 100.0 32 ............................ ACATTGCCGACGTGATCGATTATCAGCGCGAA 21278 28 100.0 32 ............................ TTGCCCAGAAAGACTTTTTTCAATGACCCGGC 21338 28 100.0 32 ............................ ACTTGTGTATCAGCGGCGATATGGGCACATAC 21398 28 100.0 32 ............................ ATCGTCAAATATCCTTGGGTATTGCATTTTAT 21458 28 100.0 32 ............................ ATTGCCAGTTTTAATCGTTCTGAAAGGGTATC 21518 28 100.0 32 ............................ GTTTGCAGACGGTAGCTTCCCTGTTGTCGTGT 21578 28 100.0 32 ............................ TCAGCTTGAGCATCCTCTTGGCTGATATCGTT 21638 28 100.0 32 ............................ CTGGCGTTATCGGCCTTAAACATCGGAGTGAA 21698 28 100.0 32 ............................ TCAGGCACTGCTGGCGCTGGCGGGGCGGTGAG 21758 28 100.0 32 ............................ TATATCGTGCGGCCACTGGCATCGGCGGTGAA 21818 28 100.0 32 ............................ AGATTGACCCACACAGCATTTGACGTCATGTT 21878 28 100.0 32 ............................ TGTACACGCAGGATGAAGTTAGGGAGTGGTAC 21938 28 100.0 32 ............................ GTACTGGGGCGGCTTCGCGGGTTCCGACACCA 21998 28 100.0 32 ............................ GGCAGCGCGCCGGAGGACTGGACGATAGCCAG 22058 28 100.0 32 ............................ TCTGGATGGCTCGATATCTTTCCGCAAATCAC 22118 28 100.0 32 ............................ CTCGGCGTCATCCATGCGTTGCCAAACTTTCT 22178 28 100.0 32 ............................ AGCGGCACGACAGACAGCTGCGAGGACGACGA 22238 28 100.0 32 ............................ GGCAAAACCAATTGTAAGCTTTGATGCTATAC 22298 28 100.0 32 ............................ TGTCCTTCATCTCTGAGCAACGCTGTAACGGC 22358 28 100.0 32 ............................ GCTCGAAAGCACATTGAAGCGATCGGGGTTGT 22418 28 100.0 32 ............................ TTCCAGAATAGCGCCTTTGGATCGCCCGCCGA 22478 28 100.0 32 ............................ TTGAACGGTGATCGTTGCTGTCCCTTCCCCTG 22538 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 22598 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 22658 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 22718 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 22778 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 22838 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 22898 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 22958 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 23018 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 23078 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 23138 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 23198 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 23258 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 23318 28 96.4 32 .......................G.... AGGGGGGATTATCTCAAGAAGGCGCAGACCGC 23378 28 96.4 87 A........................... AGCTGGTGCAGCGCACTGCGTAGCCCTGCAATGTTCACTGCCGTATAGTTAGAAAATCCCTTTGGCCGTGGTGCTGGCGTCGGGGTG 23493 28 100.0 32 ............................ TGGGTAGATAGCTTTCCCAGCCGGTGAATCCG 23553 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 23613 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 23673 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 23733 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ======================================================================================= ================== 48 28 99.2 33 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGATAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //