Array 1 784802-784031 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FNKC01000001.1 Streptococcus equinus strain C277, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	====================================	================================	==================
    784801	    36	 100.0	    32	....................................	ACAAACACCCAAGCATTACCAGCCATGGTAGA	
    784733	    36	 100.0	    30	....................................	TAATAAATTTGCTAGTGTAACTCTTAAAGA  	
    784667	    36	 100.0	    30	....................................	TCATTCGTGGGGAGTCTGATGATGAAGACG  	
    784601	    36	 100.0	    30	....................................	CTTTTAATCGCGTCTTTTGGTTAGGAGGTT  	
    784535	    36	 100.0	    30	....................................	TTTTGTGCGGAACAAAATTGCAACGTCGTT  	
    784469	    36	 100.0	    30	....................................	CCGTAACTTAAAATCTGCCGTTGAAGGTCT  	
    784403	    36	 100.0	    30	....................................	CGAGGCTATCCGCGTTATTTTTAATACATA  	
    784337	    36	 100.0	    30	....................................	AGAAATAGAGGATGCTTATGGGATTGGTGT  	
    784271	    36	 100.0	    30	....................................	GACACATAAGAAACATTTAAAGAGCTATAT  	
    784205	    36	 100.0	    31	....................................	CAATCCAACACCACAAGTTAACTAATAATGA 	
    784138	    36	 100.0	    30	....................................	GATTTGAATATTGGTTCGACAATCGTTGAT  	
    784072	    36	  88.9	     0	....................T...AAA.........	|                               	T,AAT,TA [784036,784038,784042]
==========	======	======	======	====================================	================================	==================
        12	    36	  99.1	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                                	       

# Left flank :   TTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGTTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAGAAGACAAAAGCTATTCGTAAAAATGTTACAGTACCAGAATGGTTGGTCAGATTAGCTGATCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGAATGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG
# Right flank :  TTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTAAACCGCGGACTTGTTGGCGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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