Array 1 17600-20395 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIDQ01000020.1 Niveispirillum sp. SYP-B3756 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 17600 31 100.0 37 ............................... GCGGCGATTCGATACGCCTTAGCTCGCGCCCTCGGCC 17668 31 100.0 36 ............................... AGCCCGTGCGAGGCATATCGGTACTATCTGCGCCGC 17735 31 100.0 35 ............................... AGGATGATCGTGTTGCAGTAGGTGCCCACGCTGGC 17801 31 100.0 38 ............................... GCGGGCTGCTTCCACCGCCGCCGTCAGGGCCTGTGCCT 17870 31 100.0 36 ............................... AGCTCGACCAAACGCAACTCAATCTGGTGCAGCACC 17937 31 100.0 34 ............................... TAGTAGCGTGCGAGTTTTCGGGCACCGTTCGGGA 18002 31 100.0 33 ............................... AACGCCATGGCCGTCGTCTACGGCGTGAACATG 18066 31 100.0 36 ............................... ATGCGCGTCGGCAAACATGCCGCTGGCCGGATGCTC 18133 31 100.0 34 ............................... CGCGCGCGACGTGACCTTGAAGCGCATATGGTCC 18198 31 100.0 34 ............................... CCCGCCTTTTGCACCCTTTTGGGCATGGGTTGGC 18263 31 100.0 33 ............................... TTCCGCCATTGGCACCACTTACGGCGTGGGTGA 18327 31 100.0 35 ............................... CTTCAGCTTGCCGTCCGTGCCCGTCAGATCAGCGG 18393 31 100.0 35 ............................... TTCAATCACGACGCCATCACGGACCCGACGCTTGC 18459 31 100.0 37 ............................... CGCCCACTGGTACAACAAGGCGGATATTGGGTTGGTG 18527 31 100.0 34 ............................... TTGCTGATACCATATTTCGTGACCCCTCCCGGGT 18592 31 100.0 34 ............................... TTCGCTGGCCGCCACCAGCAGGGGGGCCGGGGTG 18657 31 100.0 35 ............................... GAAATGAAATCCCGCGTGCTGATGGCTCGGAAGAC 18723 31 100.0 34 ............................... ACTGGTGGAGCGACGACTGGAAGACCGGCGGCTT 18788 31 100.0 40 ............................... AGCGCTAGCCGATATGCATCCAGCACGCGCGGGAACCGCG 18859 31 100.0 34 ............................... GTTGTAGCGGGGAAAGCGCGCATACAGCCAGTCA 18924 31 100.0 35 ............................... GCTGATCCACCCAGCATTGGCCGGCGTGCCCACCA 18990 31 100.0 34 ............................... TGCGCCGTGACGCGCATGGCCGCGTCATCATCTC 19055 31 100.0 34 ............................... ATTGCCAGTCTCGATGTGCCGACGCGCGACTACT 19120 31 100.0 34 ............................... AAGTACGGGTGCGCAACGCGCATTGCGCAAGCTG 19185 31 100.0 34 ............................... GACGCCAGGAACTGTTGATGTCGCAGCAATCCTG 19250 31 100.0 34 ............................... ATTGTACCAGCTGGCGTCGGGGGAGGACCAGGCC 19315 31 100.0 35 ............................... AAGATTGCTGAAATCATTGGGGACAAACAGGCGCG 19381 31 100.0 35 ............................... CCGGACCTGCCCAAGACGATCCCGGCACTGTTGGC 19447 31 100.0 36 ............................... GTCCGATCCAGGCGGATGAACAGCGGCAAATGGCGG 19514 31 100.0 35 ............................... CTTTAAGGAAACGCGTCCGGTTGGCCAGCTGCCGG 19580 31 100.0 34 ............................... CTGCGCCGGATGCGGCAGGAACAGGGCTTGACCC 19645 31 100.0 35 ............................... CAGACCAAGCTGCTGGGCAAGTATCCTTGTGTCTC 19711 31 100.0 34 ............................... GCCTGCCAGCGGCGCACCACGCGGGCCCGCATTC 19776 31 100.0 35 ............................... GCCAACCGGCTCCGCGTCTGGACGCTGGAGGGCCG 19842 31 100.0 34 ............................... CCGACACCGGGAGAATGGTCGCCGGGTGGGTGGT 19907 31 100.0 34 ............................... CCGGACGTCCTCAACATAGGCGACCGTGCCGTAG 19972 31 100.0 35 ............................... TGGATCATGGCGCGGGCCTTGCCACCCGCCGCCAG 20038 31 100.0 36 ............................... TTCTACGGACAAGATGACAAACCTGCCGTAGACTTG 20105 31 100.0 35 ............................... TCTAAACTTGCGCATTCTCCGTCATGGTGTCCTGG 20171 31 100.0 33 ............................... CCAGCCGCTGCGCCTCTGCGCGCGCCTCGGCCG 20235 31 100.0 34 ............................... CTGCTGGCCGACGCCTTCCCGGTCCCCCTCCTCC 20300 31 100.0 34 ............................... TTGGCACCAAGCCGCCAGCACCGTGGCCGTCGAA 20365 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 43 31 100.0 35 GTCGCCCCTTCACGGGGGCGTGGATTGAAAC # Left flank : AGGATGTGTCCGGCCTATGCTGATGCTGATAACCTATGATGTCCGAACCGAAGACACGGCAGGCCGTCGCCGTTTGCGCCGCATCGCCCGCGCCTGCCAGGATTTTGGCCAGCGCGTGCAATTTTCGGTCTTTGAGTGCGAGGTGGAACCGGCACAATGGGTGGCCCTGCGGGCAAGGCTGGTGGGGGAAATCGATCCCGCCGTGGATAGTCTGCGCTTCTACCATCTGGGTGCCAACGCCGCCCGGCGGATCGAACATGTGGGTGCCAAACCCGCCCAGGGTTTCGATGCCCCGCTGATCTTTTGAGCACGTCACCCCGTGCCGCGCGAACCGTAAGCGATCATGCTGAACACATGATGTTCGCGCTGAAAAATGCCATTGAAAGACAATGACTTAAACTCCACACTCGGTTGTTGGGTGCCCAGCCGACGAGCCAAACACCAGGGTTCGCGCACAGCGAGCCATTGTGCCTTCTTGGACAAGTGTATATTCAAAGACT # Right flank : CATTGTGGATGAAGTTCACGAGGTAGCCGTCAAGGAGCTCTGATCCGTTTTTTGAGAGTTGGCGCAGCTCGGAACCGTACACAGTCAAACGAGCGGCTTATCGCATCCTCACCGGTGCGGGGGTGGCGGATCTTGTGCCCCTGGCGCGTTACCCTCTCCAATGTGCCGAAGCCTCGAATTCGGATCGCCTCTCGATGTCTGCGTAATGCGTGCTTCATTGCGTCTAAAATCACGTGATAAACAACAATCGCGTCGCCTTGGGACAACCCGGTGGCTTCAACGATCCGCCCGATAAAGAACGCGTCAGTACAAGTCGGACGTGTTGAACGGGATCGGCGTGATCTCTCTGTAGGAGCCCGGTTTCGGTCTTGACACGTAGAGCAAACTTCACCTGGAGGTAATCCCAGCTCAAGCTCTTCCATCACTTTCCCTCCGGAATTTCCGCCATCAACTGCGCAACCTCGTCCTCCTGTGGTGCATAGATGACTTGTATGCCATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 480347-481411 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIDQ01000003.1 Niveispirillum sp. SYP-B3756 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 480347 28 100.0 33 ............................ ATCAGCACGGGTGGCCTGGGTGCTGGCCAACGT 480408 28 100.0 33 ............................ CAGCCTGCGTGAGAATGCCGGCGCACTGGTGCA 480469 28 100.0 33 ............................ CGTGGCGCTTGGCAAGCTGAATGGTACGGTTGA 480530 28 100.0 33 ............................ CTCCATCCACAGGCGGGGCCGGCCATCCGGCCC 480591 28 100.0 33 ............................ TGATGACACGCCCGCCCCGCGTTCTGGTGCGCT 480652 28 100.0 33 ............................ TGCCGGGACGTTGCTGGGGGTATTCCCCTTGGC 480713 28 100.0 33 ............................ TTGCTCGTACAGGGCCGCCCAGGAAATTGGCTG 480774 28 100.0 33 ............................ TTGACCAAAATAGTTTTGCTGATCGTAAGCGAA 480835 28 100.0 33 ............................ CGCCTGCTCGAGCAGCGGTATTGCCGTCGTTGC 480896 28 100.0 33 ............................ CCGCATCCATCGCACGATGACAGGATAACCGCC 480957 28 100.0 33 ............................ TCGATCGTAGCATTCCTGATCCAGCACTTTATC 481018 28 100.0 33 ............................ CCGAGGAAGCAAAATGACTAGCAGCATCGCCGC 481079 28 100.0 33 ............................ TGACGGCACCATCCTGATCCAGTCTTACCGCGA 481140 28 100.0 33 ............................ CGCCATGTACCAGGCCAATGAGCGGGTTGAAGC 481201 28 100.0 33 ............................ TGATACAGGATGGGTTAACGGTAGTGTCAGTCA 481262 28 100.0 33 ............................ CGGCAGGCTGAAACCGCTGCCTGGTCACAGGCC 481323 28 100.0 33 ............................ TTCGTCGTCGGGATCGAGACCAGCCTTGCGGAT 481384 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.8 33 GGCTCCCCCACAGACGTGGGGATGGACC # Left flank : CCTCCCCCAGCCGCCAGGCATAAAGCCGGCGGGCGATGGACAGGCGCGCCCCCTCCGCATCGGCCCACACACGGGCCTGCCGCCGGGCAATCTGGCTGTCATCGGCCCCCAGGGGCGGGGCGGTATAGGCCCGCACCCCATCATCCCCCACAGCGGCCAGCCCGGTGCCATGGCGCGCCATCAGGCGCAGCACATCATGGCTGACCGTGCTGCCCGGCCCCAGCAGGATCAGGCTGATGCCCTGAAAGGGAATGTCATAAAGCCCGGCCGGCATATCCGGCCCGCCCGCAGCCGCAAAGCGCAGACAGCCATTTTCCACGGTGAGGCCCCCACGCGAAAGCCAGATCAAGCCATGGCGGTCAGCATGGGGCACCCGCGCCGTCTCCAGCCCCAACCGCCCTTTCAGCATGATTTCCCTCTCGCAATAGGGGATATGTTGAGATAATATTCTGGGGGAAAATCTTGGACAAGTGAATAATTTCAGGTATATCAAGCCTAGA # Right flank : CTGCGGCACCGTGATGTGCCGCTCTCTGCTTTCGGGCTCCCTGGCGCTCCACCCGGTCCGGGGCAGGTCCAGCCGCGAATCAGTCCCCCTCATGCCGCGGGCAGAATCCATCAGGATGGCAACCTAACCCAAAGTGTCGTCACGCCCCCCTGTGCGCTGCACACAGACATGCTAAGCTCCACTTGAATTCGCTTTTCATTATGCGTCAGGCGGACGATGCCCATCAGAACCGGACATACCGCAGCCAGATTATATTTCTGGCTTGCCACGTTTCTCGCCCTGGGGCTGTTGGCCATCATTCTGGGACAGTTGGCAGAGGACAGGGCGAAAACACGCGCCGCTGCCACAGCCTCCGCCAGCAATGTCGGCAATGCCCTGGCCACGGATATCGGCGGCTCCCTCAATACGCTGGAACGGATGCTGCTGGGCGTGCGGGGGGCCATCACCGCCGGTGACACGCACCTGGCGCGCGAACGGCTGGACATGCTGTTGCTGGCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCACAGACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 630684-632176 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIDQ01000001.1 Niveispirillum sp. SYP-B3756 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 630684 28 100.0 33 ............................ TTCGATCTCGCGGGTCCAGTCTTCAATCTGGCG 630745 28 100.0 33 ............................ GTTGGAAGGGCACCATCAGATACTTAGGATCAA 630806 28 100.0 33 ............................ TGCCCGGCTCTATGAGGTGCTGGACCTGCCCGG 630867 28 100.0 33 ............................ TTCTTATGCTTCCATTTCCCAGCGCACGACCAA 630928 28 96.4 33 ...................A........ CTATATTGGCGACATCAACCGCAATTACCGCGA 630989 28 100.0 33 ............................ CCCGTTCCGCCAGTGCTGACAGGCCCAGGTGAT 631050 28 100.0 33 ............................ CTGACCAACATCCCGGCATTTGGCCCGACCTAT 631111 28 100.0 33 ............................ TTCGCCTTTGTCCGAACTTCATCATTTTCTGCC 631172 28 100.0 33 ............................ ATTATGGCTGGTATCAAGAGCTTGCGCCGCGAC 631233 28 100.0 33 ............................ CGTGCTAGATCATGGCGCGGTCAACAACCCGAA 631294 28 100.0 33 ............................ CGCGGCATGGCGGATGATGATGGACAATGGCGG 631355 28 100.0 33 ............................ CTTGCACCACACGCCGGGTTGTGCCGGGTGCAG 631416 28 100.0 33 ............................ TGCCACGCCGCTGGAAAGCGGGCTTGCCGCCGC 631477 28 100.0 33 ............................ CCTTACCGGACCCTACACCAAGCCCTTGGCCGG 631538 28 100.0 33 ............................ TGGGTTGCCCACTCATCAGCGGCATGTCGGTTC 631599 28 100.0 33 ............................ CTCCCATGACACACGCGCGCGATGCCTTGGCCC 631660 28 100.0 33 ............................ CCGTTCCGCCGGATCACGCAGCAGGATGGACAG 631721 28 100.0 33 ............................ CCCGCGTAGGGTATCATCAGGTTGTGCCCGCTC 631782 28 100.0 33 ............................ CATGTGGAGCGCTCCCTGTGTCGAAAGGCACCC 631843 28 100.0 33 ............................ CCAGGGCATCGATGACCGCCTCTTCGCGGCCAG 631904 28 100.0 33 ............................ CCTGCCGTTCGAGATCGAGTTGCCGGCCGACAC 631965 28 100.0 33 ............................ CGCCATTCGCCGCCCCGGCGATGTGCCAAGCGC 632026 28 96.4 33 ............G............... CTCGGCACCGGCTGGCGCTGAAATGACGGGCTG 632087 28 92.9 34 ............G..........A.... TCACCAGGCTCCCGGGTACAGCCGTAGCGTTTCG 632149 28 75.0 0 .............C.T......ATACT. | ========== ====== ====== ====== ============================ ================================== ================== 25 28 98.4 33 GGCTCCCCCACACACGTGGGGATGGACC # Left flank : ATGGCTGGGCCTGAACCCCGCCGTGCCCTATGCCCAGGTGGTGGAAATGTGGATCGACCCCGCCCAACTGGCCCGGCCCTGCCCGCTGACGGATGTGACCGCTGGCACCTGCACCCTGGACGATGCCAGCACCGTGTCCCGCCCCACCTGTACGGCGGGCGATACGGCCTGTGGGGAGCGCCAATCCTATTGGGACTGGTTTTCCGGCAATATGCGCCAGAACCTGAAGGAAGGCGGCGCCCCCTGGACCCGTCTTGGCTACACTTTCGACTGGAAGCCCAAACAGGGCGGCGGGTTTGAACGCTATGGCGCCAGCGAGTTCATCCTGAAACCGGGGGCGAAGTACGAGGTGAAGACCGCCTATACGCTGGCGGATTATTGCGCGTCGCCGGGGGTGTGAAGGCGACGAAAACCTCTTCATTCAATAGGAGATATCTGTTAGATTTTTTCGGCGGCGTTTTCTTGAACAAGTGAAACATATCAACCCCCTACCCCCTAGA # Right flank : CCCCCCTGTGACGGCGCGCGTTGACCCCGCCCCCTGCCCGGCCCACACTGGTGAAAATAAACCGCCGGGAGGGTAAGCCGTTGAAGGAGAAGGAGCTGCGGATCGCGCTCGTCTGCTATGGCGGGGTCAGTCTGGCCGTTTACATGCATGGCGTGACCAAGGAGCTGTGGAAGCTGGTGCGGGCCAGCCATGGGCTGCACGCGCCGCCCCATGGCCCCGTACGGGCACCGGTGGATACTGAGGTGGTGTATCGTGGCCTGCTGGCCGATCTGCTGCCAGACCTGTCGCTGCGGGTGCTGGTGGATGTGGCGGCGGGGGCCAGCGCGGGGGGCATCAATGCCGTGCTGCTGGCCCGCGCCATCGCCCATGATCTGGATCTGGAACCGCTGACCCGGCTGTGGCTGGAAAATGCCGATGTCACCGCCCTGCTGACGCAAGACCATAAGGCCGGGCGGTGGAGCAAATGGTTCATGCGGCCCCTGCTCTGGCTCTGGTTCCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCACACACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //