Array 1 10797-10095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLI01000019.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N50423 N50423_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10796 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 10734 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 10673 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 10612 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 10551 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 10490 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 10429 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 10368 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10307 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10246 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10185 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10124 29 96.6 0 ............T................ | A [10097] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28487-27056 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLI01000019.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N50423 N50423_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28486 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 28425 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 28364 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 28303 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 28242 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 28181 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 28120 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 28059 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 27998 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 27937 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 27876 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 27815 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27754 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 27693 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 27632 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 27571 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 27510 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 27449 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 27388 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 27327 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 27266 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 27205 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 27144 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 27083 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //