Array 1 12062-10143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVM010000048.1 Erwinia amylovora strain Ea3-97 Ea_3-97_contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12061 29 100.0 32 ............................. AAGTCATCAGCAATATCGCCAAGGTAGTCATC 12000 29 100.0 32 ............................. CCGGGTATGACTTTTACAGCACATTTTCAGAT 11939 29 100.0 32 ............................. TACCCAATGCCACCCAACAAATTTCTGATTTG 11878 29 100.0 32 ............................. CTCGTCGATATGCTTAACGCCGAACTCTTTAT 11817 29 100.0 32 ............................. AATATGAAGCACTCATCACGTCCTCTTCTATT 11756 29 100.0 32 ............................. CAGCAGTTGCAGCTGCCTGTCCCATGAGCATG 11695 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 11634 29 100.0 32 ............................. AAATCCGCCGCATGGCAGAGATGGATGGAATT 11573 29 100.0 32 ............................. AGTGCGGCAGTTTTGGCCGCTCAAATTGCAGC 11512 29 100.0 32 ............................. CGATTTGGCGGAAATGTCGGCGGAGATGCCCC 11451 29 100.0 32 ............................. CCATTGCGTTGCGTGACGTGGTTCGCGTTACT 11390 29 100.0 32 ............................. ATGGCCTAAAGCACCGCCTGGTGTCTCAAAAT 11329 29 100.0 32 ............................. AAAACAGCCCCATTCCGGGCGCTACTTCAGAT 11268 29 100.0 32 ............................. CTTGCGGACAGAATTTCTGACGCAGGCGCAAT 11207 29 100.0 32 ............................. CTATCTCGAAATGTGAGCCGCAGTCCCCAGCG 11146 29 100.0 32 ............................. CCATCGCCGGAGCCGGAGCCATCGCCGGATCC 11085 29 100.0 32 ............................. CCATATAGCAGATACGCCCAGCGCTTCCGCTA 11024 29 100.0 32 ............................. TCAATTGCATGCTGCCGGGAATCAAAAACAAA 10963 29 100.0 32 ............................. ATAAAAAGGCTCATGAATAACTTACTTCTGCC 10902 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAACCAGCTCGCCC 10841 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 10780 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 10719 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 10658 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 10597 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 10536 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 10475 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 10414 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 10353 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 10292 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 10231 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 10170 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43456-41840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVM010000048.1 Erwinia amylovora strain Ea3-97 Ea_3-97_contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43455 29 100.0 32 ............................. CTATCTTGGGAGTTGATGGGTCAGTGGACATG 43394 29 100.0 32 ............................. ATGCCCCGAGAACTCAAAACGTTGACGTTACA 43333 29 100.0 32 ............................. CCTACGTCCTTTATCTGATGGCGACTAATAGG 43272 29 100.0 32 ............................. CCGCAACCGGAACAACAACGACCACCGGACGC 43211 29 100.0 32 ............................. TAACAGGAAACCCCATGGCAGAAACATTTATA 43150 29 100.0 32 ............................. GGCACGGAGCGAAGAGTGGCAGACACCGATGA 43089 29 100.0 32 ............................. CTTAGCTACCAGAACAAGCAAGCAGCGTCACG 43028 29 100.0 32 ............................. AGCATGGGAGCAGACGACGGAAAAGCCGGCCT 42967 29 100.0 32 ............................. CAAATGAAATCCTGAAATCCCAGGAGGTTCGA 42906 29 100.0 32 ............................. TTGGGGCGGACATTGCTCCTTTGCTCCAGGTA 42845 29 100.0 32 ............................. AGCGGCAGGCGGCCAGAGATCATCATGGCGTT 42784 29 100.0 32 ............................. CATCACTGGTATGATTTCTGCAACAACCCCGC 42723 29 100.0 32 ............................. ATGGCGCGAGGAAATTTTTATCATTGGGGGAT 42662 29 100.0 32 ............................. GAAAAAAATTATCCCCACTGGATTGGAAATTC 42601 29 100.0 32 ............................. CGAACGGATAACTGTCACGTTTTCTGGCGGGA 42540 29 100.0 32 ............................. TTATCGACGACCACTATACGGAAATGCAGGAA 42479 29 100.0 32 ............................. CCTCGTTAATTTATGATGCCTGGGGGTTATTA 42418 29 100.0 32 ............................. TGGTCAATTTTCCTGCTCAATGTCAGTTTTCA 42357 29 100.0 33 ............................. AATGCCAATACGAGTACGCCTTAAATATTTGGC 42295 29 100.0 32 ............................. TCTGCCATCACCAACAACAACGCTTGGCATGT 42234 29 100.0 32 ............................. TTGGCTCAACAGAACAACAACGCAATCCAGCT 42173 29 100.0 32 ............................. CAGGGCAATATCCGTTGATTCGCTCATATCAA 42112 29 100.0 32 ............................. CCATCAATAACCGCGATGGCAAATCGCTTCAG 42051 29 100.0 32 ............................. GAAAAAATATCCGATCTCCGGGAAAAGCAGGG 41990 29 100.0 32 ............................. CTTTTGCCCGGTTGCGAAGTCCTGGAACTGGT 41929 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 41868 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CAGATAAACCGCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //