Array 1 55-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFV01000127.1 Saccharopolyspora erythraea NRRL 2338 ctg23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 55 37 100.0 36 ..................................... CCCGAACTCCCGGGCCTGCTCTCCGCCGAACGCCTG 128 37 100.0 36 ..................................... ATCGAGGCGCTGTTCAAGGACCCGGCGATGCTGGAG 201 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GCCGCAATGAGGACCGACGCTGCGCGTCGGTGACGGG # Left flank : CTGCGCGTCGGTGACGGGTACGCGAGCAGGCTGAGATCCATCCCCAGGCCGAATG # Right flank : GGGCTCCTTGTTTTCGGTGCCCGTGTCCTGGCTTTTCAAAGATCGTTTCGAGCGGGTGCTCGGTGTCGATCTTAGCGTCCACCGATGTGGATCTTACATGCCTGCCTCTCGCTTCTGACCTGCGGTGATTCGCCGCGAGTGCCCCCGCCTGGTGGTGGCGTCGCTGGGCCGCTCGCGTGTGGGGCCATCCGAGTAGAGGCTGCTGCAGGTCAATCCCGGGTTGGGAAGGGTACGTACCGGCTCGTGTCTCGGTCGAAGGTGAAGGCGGTCCAGCGGCCCCGTTCGGGGGCGAATCGAGCGCCGAGTGCGACGGCGATTGGGATGGGGCCGCTGAGAAAGATGAGTCGATGTCGTTGCGCCCCCGTCGTTTCCGTGTGCTTGCGCCACTCGCGGCAGGCTTGTTCGACGACGGCGGTGAAAGCCTCCCTGGTCTCCGGGATTGTGGTCGACCATGTGCGGAGGCTGAGCAGCGTCCGGGCACCGTGTTCTTGGCAGACCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGAGGACCGACGCTGCGCGTCGGTGACGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.60,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 179191-178718 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFV01000002.1 Saccharopolyspora erythraea NRRL 2338 ctg20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 179190 35 83.3 38 .C...CG..A.A-....................... ACCATGCCCGGGTGCGCATCCGCACGGCCGCCGACCTT 179117 36 100.0 42 .................................... GCCTTCACCTTTGCCGGCATCCGGCCGGAGTTGTTCAGCCGG 179039 36 100.0 35 .................................... CCAAAACCCTGCGTCGTGCATCAACCAGTACCCGG 178968 36 94.4 37 .......A...........C................ ATCACGATGGCGGTAGAGCTGTCGGTGTAGTCGGCGA 178895 36 94.4 35 ..............C........C............ AACCAGAGGGAGAGGGCTATGGGCAGCGGCCACAT 178824 36 91.7 35 ....A.....G...C..................... TGGTCACGGAACTGGCCCGCACCGAACTCGCCGCA G [178801] 178752 35 75.0 0 A..GG.T..A.A..TG..........-......... | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 91.3 37 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CCCGCCCACACCGGGTCAGGATTCA # Right flank : GAGATAGTGTTTCCCAGCGGTACCGCGATCCGGCGCTGGTACGTCACCGTGCCCAGCGACGCTCCTCATTTCTCGCGGTAGCCGTCCGAGTTCAGCTATGGGTCGGCAGGAACAGGCCCATTCCAAGATATCTCTGTGATCCCAACAGAACCGGTCCTGTTGCTGGCTCGGCAAACGTGATTTTCGCGTGGGTGTACGGGCGGTTGTCTCGGCGGGGTAGTTGCGATCGGCCGAGGTCGGCGGCTCCGTGGACGAACGGGTTCCGGCTCGTAGTCACTTCGATCGGACTGGGGAGTCCACTTCGGATGCATGTGCGGGCGATCTCCGCCGCTTCCCTGCCCTTACCCGGGTAGCGATCCAGCACCATCGGCGTCACCGTCGTCCAGCTTCGGGACGGACCCGACAACCCAGCCGTGACGGGCTCGGCATCCTGGGGCCGCAGTCGCAGCCGTACACCCGGCAAGTCCAGATGAAGTGGTTTTCCCGTTGTCAGCGCCGCA # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 86-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFV01000168.1 Saccharopolyspora erythraea NRRL 2338 ctg133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 86 31 100.0 39 ............................... ACAGTAGCGAGTTGGCGATGTTTGCCTGGCCCGAGCCTC 156 31 100.0 43 ............................... CGGTGCAGCACAGCCCGTGTCGCGCGTACGGCGGCGTCGCCTC 230 31 93.5 41 ..................TA........... CTGGGCGATCCGCTCCCCGTCACGCTCGACCAGGCGGCCTC 302 31 90.3 0 .............T....TA........... | ========== ====== ====== ====== =============================== =========================================== ================== 4 31 96.0 41 AATGAAGGGCCGTCCCGGCGGGGACGGCGAG # Left flank : CCAACTCCTCGATCACACCATGACCATGCACCGAGTCGATCAACCATCGCTATCAGACACGCCCATTATTCTGAAACGAGTTGTTA # Right flank : GGTGTTCCACGTCGAGCTGTAAGGCTGCCCTTGAGGTTCCCCCGAGAACTCGGAGGGGTTGGTTACCTGGTTCCGGTTGGGGATGCTGGGATCGTATCCGGTAGGGGCTGGACTTCCTGGTTGGCGTGCCAGGCGCTCTCGTATTCGTCGGGTGAGAGCCAGCCCAGGTCCTTCTGGATGCGCTGGGTGTTGTACCAGCCGTCGATGTAGCCGAAGATCGCGTTTTCGGCCTCGTCCCGGGTTCGCCAGGAGTTCCGATACACGAGTTCGATCTCGCATGGGCATCGGCGACCGCGTCTGACCGGGAAACGGGCTAAAAGGAGGGGCGGCGCGGTGTGCTGAGCGCACCGCGCCGCCTGCTTGTCCCCGTATCGGTGTGGCAGGTGCGAAGAAACCTGCCCTCTCCCAACGAGCCGCCCGTCATGCCCGCGGCCGGAGGGGGCCGTGCTGGCCGGAAACGGCGAAGTCGAGACCAACCACGGACGCCTCACCGCCCCCTG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAGGGCCGTCCCGGCGGGGACGGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1227-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFV01000158.1 Saccharopolyspora erythraea NRRL 2338 ctg21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 1226 36 100.0 34 .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 1156 36 100.0 35 .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 1085 36 100.0 35 .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 1014 36 100.0 37 .................................... CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTCAG 941 36 100.0 51 .................................... ACGGAGTAGAACGGCACCCCGGGCACCCCGGGGTTGAAGTAGTACTCCGCC 854 36 100.0 39 .................................... ACCAAGCCAAGCTTGTCGCCGAGCACACCACGCACGAAG 779 36 100.0 59 .................................... TCCTGGGCCTGCTTGGTGAACCACAACGGCCTGCTCGGTGAACCACAACGGCAGCACAG 684 36 100.0 43 .................................... CAAGAACGCCTCGGAGATGATCCGCGAGTGCGGCTTGATCCGG 605 36 100.0 38 .................................... CTGCCACCAGTAGCGCAGCAGGGGGAACGCCAGCTCCA 531 36 100.0 37 .................................... TTTCCGAGGCGAAGGTTTCTGGTGTTCGCCATGTCGC 458 36 100.0 40 .................................... AACTCGGTGTCATAGAAGTACTTCATCGTTTGAGTTCTTG 382 36 100.0 37 .................................... TGTCCTGCGCCTCGTCCAACAGGATCACGTCGTACGG 309 36 100.0 42 .................................... CACGTGCCAGTGCGGGTCACCGATCGGCGCGTCGCCGACCGG 231 36 97.2 35 .........................G.......... CTCGGAAGGTTGGCCATGCGTGGTCCGGGCAGGGA 160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================== ================== 15 36 99.8 40 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CGGCGCCGCGCCGGAGACGCTCGGCGCGCACCACTACGACCTGCTCGGCATCGACGATCCGCGACTGCACAATGTCAACGTCCTCGACCAAGACGAGGCAGTATCAACCGAAGAACTAACGGAGGCCCAAACCCTCTGCGAGAAGCTGCATATCCCAACCGCATTCGCGGCACGCGTGGCGATCGGAATCCGCGGGCGAGGAACCTGACTCCACCCCGAACAGCGACTTCGCCCCCACGACACAGCCCGCGGCGACCGCAGCAGTCACAAAGGATCGCTGTAGTCACGGCAGTCACAACATGCAGCTCGGACCACCGGATCGTCCGCGAGCGGTCCGGCCACGACACCGCCAGGCAGAGGCGCTCGCAACGGGTTACCCCTGGTCAGAAGCGAGAAACAGGCATGTAAGATTGACATCGGCGACCGCCGAGATCGCTACCGAGCATCCACTCGAAACGATCTTTGAAAACGCAGGACACGAGCACCAACAACAGGGAGCC # Right flank : CACGTCCACGCCGAGGTAGTCGGTGCCGAGGCGATCGTCGGTGCTGTCACCGGCGCCAAGCTGTCAACGGCGGCCGAATGTGGACCCGGCTGCGGCGGCTGAAAATGGACCCACCCTGGTTGTTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 6318-6871 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFV01000158.1 Saccharopolyspora erythraea NRRL 2338 ctg21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 6318 35 88.9 41 ......G.-.A..................A...... CTGCCGGGCTACACGCTGTAGTAGGGGATCTCTCGATGTGG 6394 36 97.2 41 ................G................... CTGAGATGGAGATTCACCGGAGCCACGACTTCGCCCGCGAC 6471 36 100.0 36 .................................... TCGAGAACGAGCTGACGTTGCCGGTGTTGTAGTAGG 6543 36 97.2 37 .................G.................. TCGTACCGGCACCAATCAGCAAGCACGCACACCCGAT 6616 36 100.0 36 .................................... CGGGTCTGGATCTTCACGGCTGGACTCCTGCGTACT 6688 36 100.0 35 .................................... AGGAAGCTGCGCACATCGCAGGCGAGCGACGTGCC 6759 36 100.0 41 .................................... GCGTTGCACACCAACGTCCGTCTCCGCACCCACCGGCGCCG 6836 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 97.9 38 GCCGCAATGAGGACCGACGCTGCGCGTCGGTGACGG # Left flank : CGGAGGCATGGACGTGACGTCCGAGGCGCATCTCCTCGCTGTCGAAGCGGTAGCCCTCCGCGTGCTCCAAGTGGAACAGCCGCGGACAAAACCGGAAGTCGCTGAGCGCGCGGGCGCCGATGGGCAATGGCGGATCCATGGGAGATCATCTCCTGTAGGTAGGTATGTGCCAGGCTGTGACACCCAGGGATGATGCACCCGCACACCGAATCTCGGGATTCACTCGATAGTGGATTGCAAGCGGCCACATCAGACCCACCCCCTCCGGTGAGCTTTTCACCGGAGCAGCCGCGACGGGCGGCTGGAAAGCCAGCAATAGCCATTGGCTGATGCAGAGGCCAACATGAGAGGCCAAGACAGCGACGTACCTGAAGATCCCGTGGCAGCGTGATCGTAAGGAACGCAAGTATGGAGCACCCGGCTGCGGAAAGCGGAGGATCGGCCCGGAACGCTCGTGGTGGCAACTGGATGCTCATCACGGCGCATCGTGGTTATGCGCA # Right flank : GAACGGTCTGCCCGGCGCGCTGATCGCGTGGTTCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGAGGACCGACGCTGCGCGTCGGTGACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //