Array 1 756914-756069 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFU01000003.1 Paenibacillus silvae strain CGMCC 1.12770 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 756913 33 100.0 35 ................................. TTGCCGCCAGGCATCCAGTCGCTCACGAAGAAAGA 756845 33 100.0 34 ................................. ATCAAGAAAAGTACGCCAACGGGTGGTGTCGGCC 756778 33 100.0 35 ................................. AGCTCCGTAATCTCGTTGGTCAGGTCAGTTACTTG 756710 33 100.0 35 ................................. AGCTCCGTAATCTCGTTGGTCAGGTCAGTTACTTG 756642 33 100.0 36 ................................. GAACTGCCTGTCAAACTGAACTGTACCGAGCTGCCA 756573 33 100.0 35 ................................. ATTGAGGATATTGGACGGATATGGGAGGATTTTTG 756505 33 100.0 34 ................................. TGCACGTCAAGGATTGATTGAGGACCGTAAACTG 756438 33 100.0 34 ................................. TTAATCAAGCATGTGCAGGATAATCCTGGTGCTG 756371 33 100.0 36 ................................. TGTAGGTGTAATGGCTCCATTGGTATTCGAAAATAT 756302 32 97.0 33 ........-........................ CAGGAGGCTGATGTCATAAGTGGAAGACCGGAC 756237 33 100.0 35 ................................. CAATGCACCGGCTAACAACGTGTATGGAGTTGCTA 756169 33 97.0 35 .............................G... CAAGTGTAGGCCGCCCGTTAGCTGCCTGAGGATAG 756101 33 93.9 0 .........T..........T............ | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 99.1 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : ATTTTTGTGGAAGTAGGTGTGAAATTTGCTTGTTCTGATTACCTATGATGTGAGCACGATGGATCGTGAAGGTCGAAGAAGATTGTCCCGAGTTGCAAAAAAATGTGTGGATCACGGTCAACGTGTGCAGAACTCTGTTTTTGAGTGTATTTTAGACGCTGCACAATTCAGACGTTTACGATATGAACTAGAGGAACTGATTGATAAGGATACAGATAGCTTGCGATTTTATAATCTCGGCGACAATTACAAAAGCAAAGTAGATCACGTGGGGGCTAAGGAAACCTATGATATGAGTGATCCGTTGATCTTGTAGCTGGTGCGAATGCCAAGCTCACATGATTTTCCCGGGGGATTCGCACCTCGAAAAGCGCTTTTTCGTGACCTTTTGGCAACAGATTGGAGTTATAATCGATATTTAGAAGGTTAGTAAAAAGAAATAAAAGCGAAGATACGTTTGTTATTTATCATTTGATATGGTATCTACGTTATTTTTCGCT # Right flank : TATGTGGCGGAAGGGAAACTGTCATGCATGCTAACAGTCACACTCCATACAGAGTACGTTGTTCAACCCGGTATATTTATTCTGATCTAGGCTAGGAAGTTAGCGACATATTATCGAATATACTGAACATCGCCATAAGAACGCTGATCTGTGAACTTTACTCTGGCGAAATCCCTGTCAAGAGACTCGGAAAGGTGCTGAATAACGACATATGAATAACGATATAAAGCAACTCCTTGCTGCAATCGCTCTGGAACAGTATGTGGCAGAAGGGACGTTCCAACAATGTTTACCCACCGATGGGAAGATCACACTGGAGCAGGCTAAAGCGCAGGCGGATGAAATATGGAGCGTAGCAAAGGAACAGTTAGAAGTCATTAGCTTTGATTACGAGGGGTACACAGTGAATCTGACCTTCCAGAGGGATGGGCTGTATTTGTTCGATAGTGTGGATATTTGGGCCGAAGAGGGAGATGGAACGAAGAAAGGTTCATCTCAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 766250-765344 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFU01000003.1 Paenibacillus silvae strain CGMCC 1.12770 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 766249 32 100.0 34 ................................ AGCTCCGGACTATTGCACAAAACTCATGTCTTTT 766183 32 100.0 35 ................................ AGGCTGCATAATCTGATCTTGCACGCGCGGAGGCC 766116 32 100.0 36 ................................ CTACCCAAGTAACCGTTCCACCGTCAGCTTTTTGGA 766048 32 100.0 36 ................................ CACCTTGAGCATATCGATTGTCTTGGACAAGTCCAC 765980 32 100.0 34 ................................ ATATGGAGGCTTACGCATGTCTACGAATTTCGGA 765914 32 100.0 35 ................................ GAAAAACAGGAAGACTTGCAATCATCCGCTGATGA 765847 32 100.0 33 ................................ CACGTCAACGTCCGCACGATTGGCAAAAGTATT 765782 32 100.0 36 ................................ CAGGCGGCGCGCCAAGTAGTTAACGGAAACAACAAC 765714 32 100.0 35 ................................ TGGTCTTACTAGTGGGCATCAGGTAACCATTATGA 765647 32 100.0 36 ................................ CAAAGCGTATATTGATGCCAGAGCATCCACAGGCAA 765579 32 100.0 36 ................................ TCAGACTGAATGTCAATTTCCTTCTGTAATCTCTCA 765511 32 100.0 36 ................................ AGCCTCGGTTAACTGGCTGTGGGGATTATTTGTGTG 765443 32 96.9 36 ........................C....... CGGAAGAGCGATCGGGGCAGCGGAGTGCGGCCGGCA 765375 32 84.4 0 ....T........A.........A.A....C. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.7 35 GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Left flank : ATGAATGTTATTTCATTTTTCTTGAAGAGAGTTCTGGAGTGCTATGGCTTCGTCATGTGTGTAAGGTGGAACATATAGATAATTTATACATAAGCGGAGATGGAGGAGGGATTATGCTGATTGAGCAAACACAAGGAGATATCACAGAGATAGTCCAAAGGATCGTTGATCGTTTATCTGGAATGGATGCTCTTACATTTCTAACAGATGTATTGTTGTGGACTCCAGAACGGGTAGATATGAGCTTGAAACTGGATCGTTTTCAATAGGAATCTAGTATATTTTTCTAAATAAGTTCAAATACGAAGAGTGCGAATGTTAAGCTCACATGATTTTCCTGGGGGATTCGCACCAAAAAACGCTCTTCTCATTCCCTTTTGGCAACATATTTGTTGAATTAATTGATTGCTTTGTATAAAATTAGTATGAAATCTTCTTTAGAAAGTGCGGAATTACGGAACATTTTCGTTCGGGAAAATGTTTATACGTTATTTTTCGCT # Right flank : GCAATCCCCAAAAGACATATCTCATTAAACGAGATATGTCTTTTTGCATCCAAGAGATAAGTAAGACTACTAAAAATCGACTGAACTTTACATCGAATTACATAAAATTCTATAAAAATACGTTTTTTAGAAGGGAAATATATTTCGATGTCGAAAATTACAATACAAGTCTTTTTGCCTATACAATTGGTATTAAGGTCTTGATAAAACATGGTGGTGAGCTGGCATGACTTACATTGCGCATATCCGTCAAAAAGACAACGAGATTCAAACGGTGCAGGCGCACTTAATCGAGGTGCAACAGGGGGCAGAACAGGCTGGAGAGAAGATTGGCATCAAAAATTTGGCTGGCATTACAGGTTTGTTGCATGATATGGGCAAGTACACTGAACAATTTCGCGATTACATTCAAGAAGCCGTGGCGAATCCTGACAAACCTCCACGAAGAGGGTCGGTAGATCATTCTACGGCCGGCGGCAAGCTGATCCATGAGCGTTACC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 768859-767873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFU01000003.1 Paenibacillus silvae strain CGMCC 1.12770 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 768858 33 100.0 35 ................................. AAAAATAAGTTTGAGGAGGGAGAACATGGACAACA 768790 33 100.0 35 ................................. GCCACAAGTGTATTTTGGCATCTTGTATATCTTCC 768722 33 100.0 35 ................................. TACACCCACAATTTGTGCACCCAATGCTTCATTTT 768654 33 100.0 34 ................................. TCAGAGATTATCACTTTTAACACTGTCGCGCTTA 768587 33 100.0 35 ................................. CCATCACGTCCAAGTAGATTTATCAGCGTCCGGCC 768519 33 100.0 35 ................................. CTCTTTGGTTCAACCAATCGCTGAAATTGGCTGGT 768451 33 100.0 36 ................................. ATTTCGCGTCGTTATAATACTGATAGAAGTGAGGTG 768382 33 100.0 35 ................................. GAAGTGTACGCGCCAATCTCCGAACCGGCCACGCA 768314 33 100.0 35 ................................. GCGAATGAACGCCCAACCTCCGCCTACAAACGTGA 768246 33 100.0 35 ................................. CGCGAGAACAGCGTTGTAAAAGTGGGCGAGGAGTT 768178 33 100.0 35 ................................. CGCATGATTGCGGCAGGTCCTTCGGAGACATCCGC 768110 33 100.0 36 ................................. ATCAGCTGCCTTAACTGTCCAACTATCTATAGGCTT 768041 33 100.0 35 ................................. ACTCGAACTAAATGTTCTTCTAGTCTTTTACGTCC 767973 33 100.0 35 ................................. TGGTCGGTCTCCCCAAATAGGAGGATATACAAGAT 767905 33 90.9 0 ......T..T...........T........... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.4 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : TTCACGATACTTGCCCATCCATTGGTGTAACGTACTTTTTGGAATGTTGAGTTCTTCAGCTAGATCTCCAAGCGTCTTCGTCTGCTCTTGGATAAATTTGACCGTTTGTTTCTTAAATTCTTCATTATACCGTTGCCGTTGTTCTCCCATGTGGACACACCTCCGTTCCTCTTATTATCCTTCCGTCCGTTAATGGGTGTCCACTTTTTATTCTAGCAACATGGTGATCGTTAGAATCTGAGAATGCCCAAAATGGGAAAAATAGCGTCGCTGTTAATCGTTAGGTTCCTGAAGCACAAGCTTGCTCGTGGTGCGAACCCCAAGCTCACATGATTTTCCCGGGGGATTCGCACCCAAAATTGCTCTTTTCGTTCCCTTTTGGCAACAAATTTGTTGAATTATTTGATTGCTTTGTATAAAATTAGGGGGGATCATGGTAAGGAGTTGCGGAATTACGAGACATTTTCGTTGGAGAAAATGTTTATACGTTATTTTTCGCT # Right flank : GGTGCAATGGGGTGCTTGGGTTGTTGCCCTGGTCGCACTCCATATGAACTGATCGAAATATTTGTGTGATTGCTTACTTGGAAGAAAAGTAAGGTAAGTAGTTTATAAAATAAAAAAAGATGCTCGTCTGAGCATCTATACACTGGTATAATTTATAATGTACAGCCAATTTGTGGTGGGGAATGGTCATCTCCTGAAAGGAGGTGATCACATGAACTTTACTTTCGAACAAGTGATGCTTATAGCAATGTTTGTAATCGCGTTGCTGACATACATTGATCGTAAGAAGAAGTGACCCGCCACAGGTTGACCGCCAGAGGTAGGGTCACTTCACTTTGAATGAGCACCACTCAGAGGTGATCGCACCACATAAGCTGTGCAGGGGTAGCCATTGGCGTGGCTACTCTTATTTTTTCTTACTTTCATTTTATTAAACATCTTTACCGCATACAACCCCTACATACATATATTTATTCTGATGAAGTGAAAAGGCTCCTTGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 205424-205185 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMFU01000007.1 Paenibacillus silvae strain CGMCC 1.12770 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 205423 33 100.0 36 ................................. ATGGATACACCACAAGCATTAATCCAATCTAAGAAT 205354 33 100.0 36 ................................. GCCCACCACAACCGCAAGGAGAAAGAGCCTAAGAAA 205285 33 100.0 35 ................................. ACTATTGGCAAGGTTAACAAGTGTCTGTAGTTTAT 205217 33 90.9 0 ....................T........T.T. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 97.7 36 GTCGCGCTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : GGAGTGGAGAAATAAAGGTTGGGTCATACAACCAAAGCGCTAACGATTCCAGATAACCTTATTTCACCCTTAAAACGGCTTTTAAAAATCTAACGATTCACAGAAGCGCTATTTTGGCAAAAACGCAGAAATTTCGGTTGAAATCGGGGTGTTTGGAGTAAATAAGGCTTCTGGAGATCGTTAGAATTTCAAAGTGACTCAAATGTGCTAAATAGCGTCTTTGGGAATCGTTAGAGATTAAGGAGTCCATCTGGCACTCGTTGATCGTTTAATATAGGATTGGAATGTGCTAGAGAAGGGGATTCCGTGGTGCGAACCCCAAGCTCACATGATTTCCCCGGGAGATTCGCACCTGTAATTTGATGTTTTTGTGACCTTTTGGCAATGGTTTATGATTATACTGGGTATTTCTGAAGCCATCGACGAAGTAGCCTGGTATAATATTAAGAAGATACGTCATGCGAATTAGATTTTACAACTTTACTACGTCTGTTTTCGCT # Right flank : GATTAGATCTACAGAGCATTCTCCATACTTTTGTCTCCGTATTGTGGAATTGATAAAAACACCCAATCCCATCTTTGATCTATTCAGATGGGTTTGAGTGTTTTTTATGTTTAAAAGAGTACTTTTCATGTTCGTTGTTACATGTGCAATCAGCTTATTTAGCTTCTGGTTTGTACACAAGCACATCTGTAATAGAGTAATCATTTCCTGACATTGATCGTAACGTATTACAATATTATTTAGAGTATCTAAGTCAAGTCTTTTTTGATTGAATCAATCGTGAATAAATTGAGTGGAATGGACGGATTGTCATTTCTTACGGATATCCTATTGTGGACTCCAGAACGGATCGATATGAACCTGAAGATTGATCAGTAGTATATATTTATAAATAGTAAAAAAATTACAAGTAAAATATTGCTAATTGACATAATTTTATAGTATGATTTTATTGACCATTGCTTAATTTTTGATTGGAAGGTGGTGTTCCCGTTGAACTC # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //