Array 1 1923317-1924138 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU349837.1 Escherichia coli strain B653 / O87:H25 / fimH30 / 4151 (ST Warwick) isolate Faeces chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1923317 29 100.0 32 ............................. AAAATTGGGACGCTAACTCATGGGTCTGGGTA 1923378 29 100.0 32 ............................. GGAAAAACGCCTGTGGTTGGGGCTGAACCAGG 1923439 29 100.0 32 ............................. TCGTCGGGTCCGACAGGGGTCGGTTGTTCGCC 1923500 29 100.0 32 ............................. GCTTAATAAACGAGGAGAATACCGATGTTTTT 1923561 29 96.6 32 A............................ CGGGCGAGACTCTGTGCAGGTGCGCAATTGTC 1923622 29 100.0 32 ............................. TTTTCAGTAAATTCTCCTGAGCTTGCTGTTTG 1923683 29 100.0 32 ............................. TTCTTTTAATGGCGTCAGGCCCATTACAGAGC 1923744 29 100.0 32 ............................. TTTTGACGATTATTCTAAAAGTGAAAATAGCA 1923805 29 100.0 32 ............................. CACGCTGGAGTGACCGGGTGGCAGAGCATGAC 1923866 29 100.0 32 ............................. CCATTTCATCATGAACGGCGGAAATATCGTGG 1923927 29 100.0 32 ............................. GTCAGTTCCCGGTTGATATATATGATGAGCAT 1923988 29 100.0 32 ............................. CGCAATGGCGCGGCGATTGCTCTCGAGATCAA 1924049 29 96.6 32 .T........................... GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 1924110 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTCCCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGCAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCATAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAAGTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTGAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1949835-1950900 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU349837.1 Escherichia coli strain B653 / O87:H25 / fimH30 / 4151 (ST Warwick) isolate Faeces chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1949835 29 100.0 32 ............................. CAACTCTCATTTCACGAAACACAGTTCAATGT 1949896 29 100.0 32 ............................. GCATTGCTGTCTCAAATAATTAATATGGGGAA 1949957 29 100.0 32 ............................. CCGCTGATCCCCAGCCTCGTAGGCGCTCTCGA 1950018 29 100.0 32 ............................. CCTAGCCCGATCATCGGCATGAGCGATGCGGA 1950079 29 100.0 32 ............................. TGAAATCAGAATTATTAGCGGAATTACAGCAA 1950140 29 100.0 32 ............................. CGTAATGAAACCAGCAAAAATTGTTTTATTAG 1950201 29 100.0 32 ............................. CCTGCAGTTTCCGCCAACGCCAGCGGACGCAG 1950262 29 100.0 32 ............................. ATAAAAAATACACTGTTTTGTGGAGCCTTACT 1950323 29 100.0 32 ............................. CCTGAAAGTGGTGGCAGACACACCGGTGACCA 1950384 29 100.0 32 ............................. TGCATCGCGTCACAAAATGGGCGAGTGCGGGA 1950445 29 100.0 32 ............................. CTTCTCCAGTTAAATCATGCCAGCGGCTTTAC 1950506 29 100.0 32 ............................. TACGTTAGCGAGGGGATCACGCAGGAAACCGC 1950567 29 100.0 32 ............................. ATTTCGAAACCCCGGCAATATTCTTTAATGTG 1950628 29 100.0 32 ............................. AGTGGTCCGCCGGGTTTATCGCTCGGGTTGAC 1950689 29 100.0 32 ............................. CGGGCCGTGCTGGTGGGCGGCGCAGAGCTGGA 1950750 29 100.0 32 ............................. GCAGCACCACCCTGACTTTGCGGCTAAACGGA 1950811 29 100.0 32 ............................. ATTAGCCCCGCCTGACCCTGCTTAATGTTCTG 1950872 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCAGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCATGACTACGCGCAATTGCCAGCGCTCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //