Array 1 1136555-1138406 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1136555 30 100.0 37 .............................. GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT 1136622 30 100.0 35 .............................. TTTGAACTTTGAAGCTCTACACTCACACCATATAC 1136687 30 100.0 37 .............................. ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT 1136754 30 100.0 38 .............................. GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC 1136822 30 100.0 38 .............................. TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC 1136890 30 100.0 37 .............................. ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC 1136957 30 100.0 37 .............................. TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT 1137024 30 100.0 41 .............................. TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT 1137095 30 100.0 37 .............................. AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT 1137162 30 100.0 36 .............................. ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT 1137228 30 100.0 37 .............................. GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG 1137295 30 100.0 37 .............................. ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA 1137362 30 100.0 36 .............................. AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT 1137428 30 100.0 36 .............................. TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA 1137494 30 100.0 37 .............................. AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC 1137561 30 100.0 36 .............................. TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT 1137627 30 100.0 37 .............................. TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA 1137694 30 100.0 36 .............................. CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA 1137760 30 100.0 42 .............................. GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG 1137832 30 100.0 37 .............................. ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT 1137899 30 100.0 38 .............................. GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT 1137967 30 100.0 40 .............................. GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG 1138037 30 100.0 38 .............................. GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC 1138105 30 100.0 38 .............................. ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG 1138173 30 96.7 41 .................G............ TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT 1138244 30 96.7 36 .................G............ AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC 1138310 30 96.7 37 .................G............ CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA 1138377 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ========================================== ================== 28 30 99.5 38 GTTTGAACCCTACCTATAAGGAATGGAAAC # Left flank : ACATAAGGTATCTTTTTGTTGGAGAAATAGAACTTCTTGGAGCGTACATGGGCAGTCGAGCCGACCTTTTCAAAATAACCCAGCTTATGGAGCGAGGTGTTTTAAAACCAATAGTTGACAAAATCTTTCCATTGCAACAAGCAAGAGAGGCACATCTATATTTGGAACAATCAAAACACTTTGGAAAAATAGTGTTGACAGTCTAAAAGTACCCTGCCTACTCAAACAAAAGGCAGCAATTACTTCGCAAAGCTAACTTGTCGTCGACCTATGATAATGCAAAAACTACTGGAGGTCGACGACAAACAGTTTTTATACACTACGACTGACAAAACTCGAGTTAGATATTTTTAACTCTGAATCGCAAGACCTCCTTCACCCCCCAGGTCGACGACAAATTAGTTATGCAAACATTCCAAAAGTTGACTTGACAAAAGCAAAAGTGATATAATTTGACTGGAATCCAAAAATGCTGGTATAATCACATATAGAGAAAACGG # Right flank : ATGCAATATGATCTTGCTATCCTTTCTTGAGAGGGTAGATACCTTGCTCTTGCAAATGTACAGCTTCAGCAAGAAAAGGCATTCAAAAACTTCTTCAGAGATCCAAAGCATTTTGGAGTACCGAAGTTTAAGAGAAAGAAAGACAAGCAGTCATATACAACGAACAACCAATATCTGAAGAATGGGAACCAGACAATTAAGGTAGACTTTGAGAAAGGACTTTTGTATTTACTGGTATCAAGAAAAAAGGAAGGTTCTAAAAACAGGGAGAAAGCAAGAGGAAGGCTTGCAAAGGAATATGAATATGTGAGTAACTCAAAGAAAGACTTTTTGCACAAGATATTCAAAACCATCATAGACGAGAACCAAGTCGTGGTGGTAGAAAGATTGAACATAAAGGGATTGGCAAGAACAAGATTGGGAAAACACATATTAATAAAGATCTTAGCTTGAGAGATAGAAGTTGGAAATGTCCGCGATATGGAAGCATGCATGATCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1151411-1152854 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1151411 30 100.0 36 .............................. TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA 1151477 30 100.0 36 .............................. GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA 1151543 30 100.0 37 .............................. ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC 1151610 30 100.0 35 .............................. TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT 1151675 30 100.0 39 .............................. ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC 1151744 30 100.0 37 .............................. ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA 1151811 30 100.0 34 .............................. GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA 1151875 30 100.0 37 .............................. TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA 1151942 30 100.0 35 .............................. TGTATTTCACGGATCTATGCAGCTTCAGATGGATC 1152007 30 100.0 38 .............................. GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC 1152075 30 100.0 42 .............................. ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC 1152147 30 100.0 39 .............................. CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA 1152216 30 100.0 41 .............................. TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC 1152287 30 100.0 36 .............................. CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG 1152353 30 100.0 37 .............................. TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT 1152420 30 100.0 36 .............................. GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG 1152486 30 100.0 37 .............................. ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC 1152553 30 100.0 39 .............................. TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT 1152622 30 96.7 37 .........................A.... ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA 1152689 30 100.0 36 .............................. TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT 1152755 30 100.0 40 .............................. TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG 1152825 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 99.8 37 GTTTGGACACTACCTATGAGGAATGGAAAC # Left flank : ACGTGAAGAGGGTCAACAAAGTTCTGAAGATAGCAAGAAAATATCTAACGTGGGTTCAAAACTCGGTACTCGAAGGAGAACTCACCGAAGCAACACTCAAAAAACTTCAAAGAGATCTGAGCAAAGTGATAGATCCCAACGAAGACGCACTGATTTTTTACAAACTACCAGATGGGAAAAACCTCTCGAGGGAAACCATTGGTACACAAAAAGGCAAAGAGACCTGGGTACTTTGACAAGCAGTTCGTCATACGAACTTGTCGTCGACCTACGATAATGCAAAAACTACTGGAGGTCGACGACAAACAGTTTTTATTCTCTACGACTGACAAAACTCAAGTTAGATATTTTTAACTCTCACTCACAAGTCCACCTTCACCCCCCAGGTCGACGACAAATTAGCTATACGAACATCTCAAAAGTTGACTTGGCAAAAGCAAAAGTGATATAATTTGACCAGAATCCAAAGATGCTGGTATAATCACATATAGAAAAAACGG # Right flank : CACGTCTTACGATCAGCCAAATTGCCGCGTAATTAAGTATATCCAACAGTGTGTCTTCTATCGCTTCATTGTTCGGTTCTCTCTTCGACGTGATTAAATTGATTAACCGTTCAAGTTTGTCACTCATTCTCACAAGCAAACCTATTTCGCCGAACTTAGCTATGTTTCCAGGTCCATAATCAGCCTGTTTCTTTGCAAACAAAACTGCCGCTTGTTCAATTGTCTTAATGTACTCTTCCAAGACTTCTTGATCCTGCGGACAAATCTGTCTTAATCTTTGCAAAAGGTCCATTCAATCCACCTCCAACGCAATCCTATAACGCAGCTGTAACATTAAATATGCAAACAAAAAGGCGGGCTTGTGTGCCCGCCTCTCTGGTATGGATATATTCACTACTTCTTGTTTTGTTCTTCTCTTGCGGCTTTTACATCACGCCAGTAGTTTTTCCACCACAGTCCTTTCTTGATGCTTTCCCAATCTCCGTTTGTCAAATCGCCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGACACTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1165766-1166980 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1165766 30 100.0 36 .............................. TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT 1165832 30 100.0 36 .............................. CATTCATGCTTTCTAGATATTACAAATCCCACTACA 1165898 30 100.0 36 .............................. ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC 1165964 30 100.0 37 .............................. GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC 1166031 30 100.0 36 .............................. GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA 1166097 30 100.0 36 .............................. AATGGGAGGAACTGTATACTACTGCGACACAGATTC 1166163 30 100.0 37 .............................. TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA 1166230 30 100.0 37 .............................. TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA 1166297 30 100.0 37 .............................. ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA 1166364 30 100.0 37 .............................. ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC 1166431 30 100.0 36 .............................. GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT 1166497 30 100.0 36 .............................. CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA 1166563 30 100.0 39 .............................. CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG 1166632 30 100.0 38 .............................. ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA 1166700 30 100.0 36 .............................. TTTCCAAGTTTAGATTTAGCGAGTCTGAACAAATGT 1166766 30 100.0 37 .............................. GTTGCTTTGCAGGGCAGACATATGTCTGCCCATTCCT 1166833 30 93.3 35 .....A..C..................... GCCTACAACAGCAACTTTCACTCCACTCACCTCCC 1166898 30 100.0 23 .............................. CCTATCCAGACTCTGTAGTGCGT Deletion [1166951] 1166951 30 83.3 0 T....A..CT..............A..... | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.8 36 GTTTGGACACTACCTATGAGGAATGGAAAC # Left flank : GATTACTACTCCGGGAACAAACCACCTGCGGACTATCAAAATCCTAACCCGATCAAATTTCTAACCGTTGCAAACACAAATTTCTTATTTGTGTTGGCAGGCGAGAACGAAAAAATCGTTATTGAAGCTGAAAGATATCTAAAACAAGCCCTTCAAGCCATAGGAATAGGTGCAAAAACATCACTAGGATACGGATTGTTCGAAATCTTATAAATTGGCTATTAAAGTAAAGAACACAAAAAGTTCGCCAAACAAACTTGTCGTCGACCTACGATAATGCAAAAACTACTGGAGGTCGACGACAAACAGTTTTTACTCTCTATGACTGACCAAACTCGAGTTAGATATTTTTAACTCTGAATCGCAAGACCTCTTTCACCCCCCAGGTCGACGACAAATTAGCTATACGAATTTCCAAAAAGTTGACTTGGCAAAAGCAAAAGTGATATAATTTGACCAGAATCCAAAGATGCTGGTATAATCACATATAGAAAAAACGG # Right flank : CAAGCCTTAGGGGCTTGGGAGGCTGTTTCTGCGTTTTGAATTTACACTGTTGGGAAGACAGACAAGTCACTGAAAGCAATGTGGTGAAGTTGTTAATCGAAGGCGAATTTTTGTATAATCTGAATTAGACGATCTTTTCATCGCGTCTTGATATCTTGTTTTCGTGGGGGTTATTTGTGTTTTTCAGAGTGAATTATCTGAGCCGTAAGGGGTGATGGAAAGATGGTTGTCTTTAAACAAACTTCCGAAAATGATCTTTTTATCCTCCTTGGAGCACTCTTGCATGATATCGGCAAGTTCTACATGAGAACAGAAGATCAAACCACAAAATCCCGTGTGAGCGAAAAATACAGTTATTTCATTCAACAAGAAGGCTCGTACGCACCTATGCATCAACATTGGGGGGCTTATTTTGTTGAGCAGGTTCTTCCAAGCTCACTTAAAGGAGTGCAATCGATCGTTTTGAATCACCATAAACCATCTTCTTACGAAGAACTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGACACTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 1176111-1178074 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1176111 30 100.0 36 .............................. AACTCTAACTTCGAATCTGTCGGGATATATTGCTGA 1176177 30 100.0 37 .............................. AGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA 1176244 30 100.0 39 .............................. ACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC 1176313 30 100.0 35 .............................. CTACATTCATTGTAATCATTCAACCACCTCCAATC 1176378 30 100.0 35 .............................. GTACGTATAGTCTCCGATGATAATTTCCGCCATTG 1176443 30 100.0 37 .............................. TTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA 1176510 30 100.0 36 .............................. ATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA 1176576 30 100.0 36 .............................. ACCATATGATGTGTTCGTTCGTACTATGGACCAGGT 1176642 30 100.0 36 .............................. TACGTATACACAAACGTCTGATAAATTTGAATCACA 1176708 30 100.0 41 .............................. TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC 1176779 30 96.7 36 .............................T TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA 1176845 30 100.0 36 .............................. TTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG 1176911 30 100.0 38 .............................. GCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG 1176979 30 100.0 38 .............................. TGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT 1177047 30 100.0 36 .............................. TGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT 1177113 30 100.0 37 .............................. AGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT 1177180 30 100.0 36 .............................. TTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT 1177246 30 100.0 36 .............................. GGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC 1177312 30 100.0 35 .............................. AGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG 1177377 30 100.0 37 .............................. TATTGTGATAGACTGTGACCACATTTTTATCTCTGAC 1177444 30 100.0 37 .............................. GTATTCAGAACACGGTGTCACGTACAATTTGAAATCC 1177511 30 100.0 35 .............................. TTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC 1177576 30 100.0 36 .............................. TACGTATACACAAACGTCTGATAAATTTGAATCACA 1177642 30 100.0 41 .............................. TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC 1177713 30 96.7 36 .............................T TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA 1177779 30 100.0 38 .............................. CACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT 1177847 30 100.0 35 .............................. TCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT 1177912 30 100.0 35 .............................. GGTCTTCCGTTACCAATTGATTGCCTTACGCTTTT 1177977 30 90.0 38 .....G...........G.A.......... GGTATTACAGGCACAAAAGTGTAATGTCCGCAACAAAC 1178045 30 73.3 0 ..G..TG.GTC.....A........A.... | ========== ====== ====== ====== ============================== ========================================= ================== 30 30 98.6 37 GTTTGAACCCTACCTATAAGGAATGGAAAC # Left flank : GCAATAGCAAAATCACTCTTTTTGCTTGATAACCGATGATAACGTAGAAACTACTGCTATGACAATGGTGTCAAACTTATAAACTACACTTGATTGCTACCTATGAGAAAGAAGCGTTTGATATTTAGTAGAAACACGCATCCTTTCACTGCTTTCAACTTGTCCTGCTCTGCCATATAAACTTTTGCACGTTGTTTTTTTTCTAAGCTTTCATGCCAAAGGTTTTGGTACGCAGTAATTTTGTTCGTAAGTCGAACTTGTCGTCGACCTACGATAATGCAAAAACTACTGGAGGTCGACGACAAACAGTTTTTATACACTACAACTGACAAAACTCAAGTTAGATATTTTTAACTCTGAATCGCAAGACCTCCTTCACCCCCAAGGTCGACGACAAATTAGTTATGCAAACATTCCAAAAGTTGACTTGACAAAAGCAAAAGTGATATAATTTGACTGGAATCCAAAAATGCTGGTATAATCACATATAGAGAAAACGG # Right flank : CACCACCATCCTGATACCTAATAGATCTTGTGGATAACAGCAATGCGCATGTCATTTATTGAAACTGCTTAAAATAAAGCAAAAAGCACACCTTGAAGTTGAACGGTTATTGGTAATAATTTGCTACTAAAAATTGTTCAAAAGCTACTATTTTAGAATCCCAAGATACGGTGTAAATTCTCTATACGGTGTGACGTTCAGTCTTCTTTGAAAGTCGAAGAAATCATTTCGAACCTGCCAGATTTTGCTCTTGCCTTCTCGCTTGCTTTGTTCCTCATTGCAAACATACGCATCTTTGGGATGACTCTCGACTAACTGAGAGCAAATTGTTTGTTGTGCGAGGAAAAAGGAGGTGAGATGGTGGTCAAACCCATCTATGCTCTGAGCGATGAGGAATACCAAAGGTTAAAGGATTTATCTGGAATGGACAACGAAGGACGCCTACCAATGATGCTCGAACCATTGGATTTTGAGTCAGATGTTGAAGCATACTTCAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACCCTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1182746-1184847 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1182746 30 93.3 36 .....G..A..................... AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC 1182812 30 93.3 36 .....G..A..................... CAGCATACAGCATTGCACCAACAACATCGGAATCTG 1182878 30 93.3 37 .....G..A..................... GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT 1182945 30 93.3 36 .....G..A..................... GGGAATGTGGTACAATTATTTATGAGCGCATAATTA 1183011 30 93.3 37 .....G..A..................... TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG 1183078 30 93.3 35 .....G..A..................... AATCCTGCCGGGACATATTCGCTTTTAACACCTAC 1183143 30 93.3 36 .....G..A..................... TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT 1183209 30 93.3 35 .....G..A..................... TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA 1183274 30 93.3 36 .....G..A..................... CTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGA 1183340 30 100.0 37 .............................. CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC 1183407 30 100.0 36 .............................. TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG 1183473 30 100.0 41 .............................. TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG 1183544 30 100.0 37 .............................. TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA 1183611 30 100.0 36 .............................. TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG 1183677 30 100.0 37 .............................. CTCTATAAACAATTCAAAAACGAAATCCATCAATACC 1183744 30 100.0 36 .............................. TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA 1183810 30 100.0 37 .............................. TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC 1183877 30 96.7 36 .................A............ GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA 1183943 30 96.7 38 .................A............ TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG 1184011 30 96.7 36 .................A............ CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG 1184077 30 96.7 35 .................A............ GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA 1184142 30 100.0 38 .............................. TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC 1184210 30 100.0 36 .............................. ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT 1184276 30 100.0 38 .............................. AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA 1184344 30 100.0 38 .............................. AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG 1184412 30 100.0 37 .............................. CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT 1184479 30 100.0 39 .............................. GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG 1184548 30 100.0 41 .............................. TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC 1184619 30 100.0 35 .............................. CCCAATTTAAACGTTGAAACCGTGCTGAATAAAGG 1184684 30 93.3 38 ..............C.......G....... AATATATTCAGGTCGCATGGCAGGTAGAGAGGTCGGTT 1184752 29 73.3 36 .....-.G.A..A.G.....A..CT..... GCTAACATCGCATCTGCGTGTACCCTCTTTTTAGCT 1184817 30 86.7 0 ..C....TA...........T......... | G [1184841] ========== ====== ====== ====== ============================== ========================================= ================== 32 30 96.2 37 GTTTGAACCCTACCTATGAGGAATGGAAAC # Left flank : GAAACGAAAAGCAACTTGAAGGTACGGTCGCAAAAGTTATCAACAACGGTGCTGGATTCATAAAATCTTCTGACTCTCAAAGCTACTATTTCAAGTTAGAGGATGTGGAAAATGCCCCAAAAAGCGCTCACGAGTTGCGAAACAAAAAAGTCAAATTCTATCCCACCAAAAGCTATGACAAAAAGAAGGGCATGGAAAGCTGGGCTGCTGTGGGAATAGTGGTTGTTGAGTAGGCAAAATTTATTCGCTATGCGAACTTGTCGTCGACCTATGATAATGCAAAAACTACTGGAGGTCGACGACAAACAGTTTTTATTCTCTACGACTGACAAAACTCAAGTTAGATATTTTTAACTCTCACTCACAAGTCCACCTTCACCCCCCAGGTCGACGACAAATTAGCTATACGAATTTCCAAAAAGTTGACTTGGCAAAAGCAAAAGTGATATAATTTGACCAGAATCCAAAAATGCTGGTATAATCACATATAGAAAAAACGG # Right flank : CTGTTAATTCATCTATGAGCATGTTAATCATTCATTCGTTCGAACAGCACCTAAGGAGTTTAGAGACTCGTCAGCGCCTTATCTAACGGATGTTAATACGCTTATTTGTACACCGCAAAAAGAAAATGGATAAAGGCTGCTTAGATAGCCCACCTTGCCGGAGTCCTGGAATTGAACTTCAACGTTTTGAAAATCCAAACCTTAATCGGGTGGTTAGCAAGGGGGAACTCAAAAGACTTTCGAGAACTTAACAATAGCAGTAATATCACAAGCCAAGCTTGAGAAACGAAATCTGAATCAGAATAAGATGCATTTTTTGGAAAAAGTATAAATTCCAATTTATTAAATGCAAATTTGGTAAATCTTGATTCTGCAAAGTGTATAATATCAACGGGGTGAGGAGATGCTCATAAACAGGGAAAAGGAATGTGAATTTTTGAGGAAAAAAGTAGCGAGCAACAAAGCCGAGCTTTTGGTCATATACGGTAGAAGGCGAGTTG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACCCTACCTATGAGGAATGGAAAC # Alternate repeat : GTTTGGACACTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 1717564-1714941 **** Predicted by CRISPRDetect 2.4 *** >NC_015707.1 Pseudothermotoga thermarum DSM 5069, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1717563 30 96.7 35 T............................. TACATCTAAACCCCTCCTCTTTTTCACCCCGTCTG 1717498 30 100.0 36 .............................. TCCGTCTCTTATTTCGTATCGCATTTCTGCAAATGT 1717432 30 100.0 36 .............................. GCGCCACCTTTCGACAGAAAAGTGGCTTGAGCAGAA 1717366 30 100.0 37 .............................. TGAACATGTTGTCACGATTACTCGCTTGGGATCACTG 1717299 30 100.0 37 .............................. GGGTAGCGGAGCGGGTAGACATATTTCTGCTCGAAAC 1717232 30 100.0 36 .............................. GTTAGTTGCAAGGGGACTTAAGCCACCGGTGGTTTG 1717166 30 100.0 36 .............................. CCAGAAGCACACATCTCTTTCAACATTAGGTTCTAG 1717100 30 100.0 37 .............................. ATCGTAATAGCGCAAATGTATTCGAGAGAACACGCAA 1717033 30 100.0 37 .............................. TTAACGCCGATCAGTACCATAAAGTAAATCAGGTTCA 1716966 30 100.0 37 .............................. TGTTCCCTCAATGACATGTGCATATGCGGCCACGATT 1716899 30 100.0 36 .............................. TGTTAAGAAAAAGTAAAATGTTGGAAACGAAATGGT 1716833 30 100.0 36 .............................. AACGCAGCGGAACGGTAAGGTGTTACATTGTGCCAA 1716767 30 100.0 36 .............................. ACCTTGAGCTTCAATATGGCAAGCTACCAAACACGG 1716701 30 100.0 36 .............................. ATTTAGACCGAAAAGCGGTTCTCTACACCGGCAAGG 1716635 30 100.0 37 .............................. TTACAAGGGGGTATGATTAATGTCCTCAAAGAAAATC 1716568 30 100.0 36 .............................. GGTATTCGGAGAAGGAGAAACCGAGCAAATGCCATT 1716502 30 100.0 37 .............................. CACTATTCGTGGCTGAGCTTCAACAGCATAGGCACGC 1716435 30 100.0 36 .............................. GGCAAGCTTGTGCCATGTAATATCTTGCAGACAATA 1716369 30 100.0 36 .............................. TAAAAAAATATTGGCGATAAGTGACAAGGGGCTATG 1716303 30 100.0 37 .............................. TATACCTTATCTATAACTTGTCAAGTTACAGAATCGT 1716236 30 100.0 37 .............................. AAGGGAGGCTCACGCCTCCCTTATTTCAATCACATTT 1716169 30 100.0 37 .............................. GAAGATTATATCGATTTTCCGTGCAGCGCAGACTGGT 1716102 30 100.0 37 .............................. GAACTTCTTCCTGCAGTTGCTTAATCTCTTGAAAAAG 1716035 30 100.0 36 .............................. AAAGAATTACGATCCGGAATAACACGTTTTGAACTA 1715969 30 100.0 37 .............................. CTCTATCTAAGTATTCTAGTTGTGCTACTAAGTCGCC 1715902 30 100.0 36 .............................. TGTAGGATCTTACGACTTCGTTGAAGAAGAAGTATA 1715836 30 100.0 36 .............................. GAATGTACAACCTCGAAAAAGCAGTATTTATGCTCC 1715770 30 100.0 37 .............................. TTACAAGGGGGTATGATTAATGTCCTCAAAAAAAATC 1715703 30 100.0 36 .............................. ATTTGGGTTAATGAAATGTAAAAGGAAGGTTAAAGT 1715637 30 100.0 36 .............................. GAGTGGGAGTTTTTAGAGGTAATCATGAAGGAACGG 1715571 30 100.0 37 .............................. TTCTTTAGCCAAAACGAACAAGTACGTATCATAGTCG 1715504 30 100.0 37 .............................. AAGGTGGCTTTCGGACAATAAGATCGACTACACACAT 1715437 30 100.0 36 .............................. GCCAAGGAATGAGAAGAAAACATTTGAAAAAGGCGT 1715371 30 100.0 37 .............................. GTGCAGGCTGCAACAAACAATGTTGTGTCTTCTTGAG 1715304 30 100.0 36 .............................. TTAAATTCATATAAATTTTTTCAAGCGCACTTAGCA 1715238 30 100.0 38 .............................. ACAATTCAATGTGTCCATACACTTCGGTAGGCAACCTG 1715170 30 100.0 36 .............................. ATCGATACCGTATACCTGCCCGGCGCACTATAACCG 1715104 30 100.0 37 .............................. CATGCCAGCATTTGAGTCTGTTGTATACCAACAAGCG 1715037 30 100.0 37 .............................. CAGGAGGCAGTAAAGTGGCGTGGAAATTCACGCACAT 1714970 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.9 37 GTTTCCATCCCTCTTAAGTTCGATTGAAAC # Left flank : ACCAAATTTTGATTTGCGCTTCATTAGAACTGTAACCAATGTTTTCCTATCCTTGTCTTTTGGCACTCCGGCAAAATGTAAATGGCATAAAGTTTGAAAATTAAATTCAATATCTTTGCCACTATTGAGTCCGCCGCAGACAAAATCAAGCGCTTTTTCATCTTCCTCGAGGTCAAATTCTCTATTCTTAAGTTCGAATGTTTCTACAAACATTTCCTTTGTAATCCTTTTTTTGAGCAAACTTTCCCACAATCAGACACTCATCAGATTGCCAAGGTACCAATGTATACACAAGCAAGTAAAAACATCGCTTTCAAACGTGGTTTTCATGAACATCTTCAACAAATGTTTTTTGATAATCATCACACTCTTTCTTACAGCAAAACAACGAATTGTTAAACTTTCCGCAACCCTCCACCATAAACTATCTCAAAGTGTTATTTTTCTTAGAAATTTTTGGCTTTATGTAAGTGCCACCTTACCTTTCAAAGTCCAAAATA # Right flank : CCTTTGTTTATTATAGCATTTGCTGTTGATTTTGCACAGGTATTCTTGAATCAAAACTATGTTCAGATTTTAGTTGAAAAACAAACATTAGACACGTCTAACAAACAAATTGCAGTAGGTTTGAATAAGCGATTTTAATGTAATGAAGGGGTTCATGTGACAGTTGAAGTCAGGGGTGCACCTCCGGCATTTTTTCCTCTATGTCAGGTTTACCAGAAAAAAGCCTTCCTTAGGGGTTTTTCGTAACATTGAAAGTAGATTCGAAGTTGTTGGAAATTCTTTCAGATTGAAATGAATATTAACTTTTCAAAGACCAAAAATTAAAGTTAAAAGCACAAAACAATTAGCACTTTTTTACAGAATAGAAGCCTTATTCGTAAAAGCAAACAAGGTTCACGGCTTCAATATTACTGAAAAGTTACAAATTGAATTATATTTCAATGATTCCATCTTTCCTTCCAAAACCAGTGGTTTTATCGTACCACAGATCGAGTTGATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTTAAGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //