Array 1 2536872-2538291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025833.1 Akkermansia muciniphila strain EB-AMDK-18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2536872 36 100.0 30 .................................... TACAAAATCTCCGTAGGGTCTGCGTCATCC 2536938 36 100.0 30 .................................... TTGACCGCCGAGGTAAAGTACTGTATGTCA 2537004 36 100.0 30 .................................... ACAGGGACTGGCCGCATGTCGATTGCACCG 2537070 36 100.0 30 .................................... CATACCGGATTGTTTCTGCATAAAACACCA 2537136 36 100.0 30 .................................... CTGACGATATTTTTAGGGGTACGGGTGACG 2537202 36 100.0 30 .................................... AGCATAGCATCGAGGAAAACAATGCCGATA 2537268 36 100.0 30 .................................... AAAAATAAAATTCTCAAAAGGTGTGATCTT 2537334 36 100.0 30 .................................... GAAATAAAACAATGAGCATTTACGACGACC 2537400 36 100.0 30 .................................... CAATCGATTATACCCCCGCAACGCACCTCA 2537466 36 100.0 30 .................................... ATGACGCACAGGCCCCAGAATCATGGGATT 2537532 36 100.0 30 .................................... CAAGGGGGTTATACCCGGCTTACTAGTCTG 2537598 36 100.0 30 .................................... TTGTATACCTGTAGGGGTGCAATTGACATG 2537664 36 100.0 29 .................................... AAGCCATCGCGCTCGTCACTTCTTTCACA 2537729 36 100.0 30 .................................... CTTGGGACGTTAAACCGTCCCTTGCGGATT 2537795 36 100.0 30 .................................... CAACTGCCTTCTCTGCCATCGTGGGGAGCT 2537861 36 100.0 30 .................................... CCTAAGCGTCTGTCATGCACAATTGCGAGG 2537927 36 100.0 29 .................................... TTCTGCTTGGGCACTATCGCCTCCCCCTG 2537992 36 100.0 30 .................................... CAACTACCCCTAGGTGCTTGGTGTGCTGCC 2538058 36 100.0 30 .................................... GGTATTGAGCCAGCATTCACGTTCATCTTC 2538124 36 100.0 30 .................................... CACCTCAACCCATGATTGAAATTTAGATAG 2538190 36 100.0 30 .................................... CTACCGTTGAACCATACACCATTGAGCCGA 2538256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGAACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCAGCCATACCAAAACAGGCGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGCGCCATCCTCAGCCGGACGTCTTCCGCCGGTTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGATGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTGCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGTTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 2613929-2613364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025833.1 Akkermansia muciniphila strain EB-AMDK-18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2613928 31 87.9 34 .........T-..C.-................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 2613863 31 87.9 35 .........T-..C.-................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 2613797 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 2613731 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 2613664 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2613597 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 2613530 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 2613463 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 2613398 33 100.0 0 ................................. | GC [2613375] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //