Array 1 42279-40394 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000002.1 Streptomyces radicis strain DS1-2 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 42278 29 100.0 37 ............................. CTAGCTCATCAGGTGGGTGCCGTCGGGGAGTTGGCGC 42212 29 100.0 38 ............................. CCGCACTGCCGGGTCAGGTCAGCCACCACGATCCACTG 42145 29 100.0 37 ............................. GCGGAGGCCCGACGAGCCCTGAAACGGCGGCTGTCGA 42079 29 100.0 37 ............................. AGGAACGCGCCCACCACGACCGGGCGTACGACAACGC 42013 29 100.0 36 ............................. ACGCTCATGGCGGCGGACAGCAGCACATAGGGGCGT 41948 29 100.0 35 ............................. GCGCCCGTCCAGTCGGCGGGCACCCGGACCTTGAG 41884 29 100.0 37 ............................. GGGCACCGGTCCGGGCCGCAATCGCGGCCTGGGACAG 41818 29 100.0 36 ............................. TGCGGCGCTATGGCACCGGACGGATGGGGGTGATCA 41753 29 100.0 37 ............................. CCAGGCAGCTCGTGGACCTCCGCGCCCGTGTCTCCTA 41687 29 100.0 40 ............................. CTCGATTTCGGCCGTGCGCGCTCTGCTGGGGGATGAGCAG 41618 29 100.0 38 ............................. CCGAAGTCGGGAAGACCGTACTCCCGGCACACCACCAC 41551 29 100.0 37 ............................. GCCAGCGCGGGGGCGCCGGCGACGTCCTCGTCGCGGA 41485 29 100.0 37 ............................. TCGAGCATCCTGGTCAGCCGGTCCAGGACGGCCCGGC 41419 29 100.0 38 ............................. CGGTACTGGCAGAAGACGAGGGTGTGCTGCCCGGCCAC 41352 29 96.6 38 ..............G.............. GGCAGATCCGTCAGCGCGTGAACCTCAATCCCATAGGG 41285 29 100.0 37 ............................. ACGGTTTCGACAGCGCCAGGGTCCAGGACGGCCCGGC 41219 29 100.0 35 ............................. ACCCGCAGTGCCACCTCACCCAGCAGCTCGGCCAC 41155 29 100.0 34 ............................. CACCGAACGGTCTCCTGCACGTGGACGTCGGCCA 41092 29 100.0 37 ............................. AGCACCTTTCCCATGGCCTCCACCAGCTGCGGTCGGG 41026 29 100.0 37 ............................. TGGGTGAGGGAGGAGATGTTCCTGGGGGACACCTGCG 40960 29 100.0 35 ............................. CAGGAACTGCGGCGTCACGCCCTCCGGAGTGAGCG 40896 29 100.0 35 ............................. GCGAACCAGCGGACCGCAAAGTCCGCAGTACCGCT 40832 29 100.0 38 ............................. CAGTGTGGTGCCTGCCGTACGCCGCGGGCTACGACCGC 40765 29 100.0 36 ............................. GTTGTATCCGGGGGCTTGCCGACGCTGGGTAAGGAC 40700 29 100.0 0 ............................. - Deletion [40672] 40671 29 82.8 16 .........C....C.C.....G...C.. GCGGGGCCGACATCAG T,GC,A [40644,40649,40659] Deletion [40627] 40622 29 100.0 38 ............................. GGCACCAGCAGGTACGGCGACGGGCCGCGCATCCACAC 40555 29 100.0 38 ............................. ATCGGCGGCGCGATCTGCCGCAGAACCACGGTCCACAG 40488 29 100.0 37 ............................. CGGACGTGGGCCCAGTCAATTGCACCCGAGACGCCGT 40422 29 89.7 0 .........C...........T......T | ========== ====== ====== ====== ============================= ======================================== ================== 30 29 99.0 35 GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : GTCCACCACCGCTCGCTCAAACGGAAGGTCAGCTACGAGGAGATCATCCACCTCGAAGCCCTCAAGCTCGTCCGCCTCTGCCTCGAAGGCACCCCCTACAAGCCGTTCCGCCCCTGGTGGTGATCCACATCTTCGTCATCCTGGTCTACGACACCGCCGTGGAACGCAACCCGAAGGTCCTCAAGACCTGCCGCAAGTACCTCCATTGGACCCAGCGCAGCCACTTCCAGGGCGAACTCTCCACCGCCCAGTACCGTGCCCTGATGGCCGCACTCGACGGCGTGATCGACCCCGAGCACGACAGCATCGTCGCCTACACCACCCGCTCCCCGGACCTCGTCGAATCCACGACCCTCGGCCTCCCCCTCGGCGGCCCCGGCGAAATCCTCTGACGAGCAGCACCCCATCTGACCTGCACCGATGCACTACCGCCGACTCGCTGCAAAATCCGGCCCGGACCACCGCCCAGGACACCTCCTGACCAGCGGTTTTACCCTCGG # Right flank : CGCTGTTTCCACAAGGACTTGGGGACCGGAACACGAGGCCGTCGGGTCACGTGAGTTGGAGTCGAACGGGTTGAGTCACGTGTGATCTGGCCGGAGGTCTTTTCATGTCGATCGATCCGGTGGTCTTGCTTTGAAAGGACCATGCGCCCGGCGTGTCGATACTGGTGGGGTGCCCGTGTGCCGCGCGCAGTTGGGGCCGACTGTATATCGGTACAGGAACGTATCCCGATCCACCCCACAGCGTGCCCAGCCCCCGTACCTCGGTGTCCTGTATCGCTGTTGTCTCTCCCGCTGCCTGTTCCTTCCGTCTTTCTCCTTTCTCTTTTCAAGCCCAATTTGGGTTCTTCCTCTCTCCTGGGGTGAGGCGCGCCTCGGTGGCCTCCTGCTGGGGCGAAGGGCTGCCTCCTCGCCCGCACCCTCATGGCCGAGCCCGCACCCGCCGCCTGCCGCCTCCGGGGCACCTGCCCCCGGGGGCGCGCCCATGACAGCATGTCAGTGCC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 50734-51821 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000002.1 Streptomyces radicis strain DS1-2 contig0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 50734 29 100.0 36 ............................. CCGAGCTCGCCGACCTGATGCGCAGCCAGGCCACGG 50799 29 100.0 38 ............................. CTCCTGGCGGTGCGGGTGGTGGTGAGGTGCTGGATCGT 50866 29 100.0 37 ............................. CGCATCGCGACGAAATCCCACGACTCCTCGTCCCTGC 50932 29 100.0 37 ............................. GCGGAACCTCGGCCGGGGCCACCGAGGGCGTCGGCGT 50998 29 100.0 37 ............................. CGGCGCACCGTCGTCTCACCGCACCCCAGCCGGGCGG 51064 29 100.0 37 ............................. AGGGGTTCTGCCGCGGCTCCACCGACGTCCAGGCCAC 51130 29 100.0 37 ............................. GGATCCGCTGCGATCCCCGTGGGGGAAGGCTCTCGCC 51196 29 100.0 36 ............................. TCAGGCGGTGCGCGGCGTGGTGGAGGAGGGCCGCGA 51261 29 100.0 38 ............................. GCGCGGTCGACCAGGTGCAGCAGCGCGGGGGCGGTGGT 51328 29 100.0 40 ............................. GTCGTCCCGGCGCCCGTGCTGCCGGATTTGACGACACCTG 51397 29 100.0 37 ............................. CACGTCTCCCAGCTCCTCCCGTACCTCGGCCTCGGAG 51463 29 100.0 37 ............................. CCAGCAGGTTGCAGGAGTTCACGGCCCCGTTCTTCCC 51529 29 100.0 38 ............................. TCGGTGGCGCCCTTGACCTGCGCGCAGTAGTCCGACGT 51596 29 100.0 35 ............................. GCAGGCCGAGTGGCTCCTGACGTCCCCCGCCCGGG 51660 29 96.6 39 ...................A......... GGATGCCCATCGCCCTGGTCGGGCGCCGCCAGAAAGGGA 51728 29 100.0 37 ............................. TTGGCCTGCCGCCCGGACGTTGGGCGTGTCACCATGC 51794 28 82.8 0 ..................-...CA...GA | ========== ====== ====== ====== ============================= ======================================== ================== 17 29 98.8 37 GTCCTCATCAACCCCGGAGGGTTCGCAAC # Left flank : CTTGAACTGCGGACTCGTCAGCCCCAGGGGCCTCAACCCATGCCCGCGCCACCCCTCATCGTGCAACGACCGTGCCAGACCGGCGTCCTGGCTCCCCAGCAGCCCATACACAACGGCCCGCGCCGGACCGTGCACGTCCTCCCACCGCAGGCTCGGCACATCGGCCGCCACGTCGACCCTGACTCGCATACCACCCCAACTATCCCGAAACGCACTTTCACGCCGCCGAGGAAGGTGACGGCATGCATTCAGACGGTAGCCGAACCATCTGCGAGGCTGAACTTATAGACTCAAATAGCTTAAAAATGTGAGAATCTGTCGCAAAAAGCTCCTCGGCGACGAGGTGCCTCGACACGTAAGCTAACCGCCACCACTGACAACGCGCCCGCGCCAACACCCACCCGGCCTGACCTGCACAGATGCACAACCGCCTGACCGCTGCAAAAACACTCCCGAGGACCCCACGTCGGAACCCCCCGACCTGCGGCTTTACCCTCGGG # Right flank : ATCCGAAAAAGTCCGACTTTCACGCTTCGGTGGTTTCCCTCCACCAGCGCATGGTCGGTGCCCGAGTGCATCTGCCTTCGATGCACGACGTACGAGTACCCGAGGATTCCAGCCAAGAAGATCACCCATCTGGACGGCCGAGCCTCCCAAGGCTCAGCGACGTCACCTCTAGGCTCTGGCCACAACAAGAAGGGAGCGAAAGGGTGGAAGAGAGTGTCGCACTTCTTCTCAGTGGGCTCATCGCAGGCGGAGCGCTAGGCGCCCTGATCACCGGTTTTTACCCCCCTCGAAGCAGCCTGCCGTTCCTTCGACAGCCAAGGTGCGGGAAGGAGAAGATCACAATCTGTAGTGCTTGCGCGCACACCTGCGTCCACGCCCCTGATTGGCACCCAGGTTGCTCCTAAGGCCCAAAGCAGCGCTCTCCGCCTCGCGTAGTCGCACCTCCGGTATACCGATTCATGAGGGCACTGCCCTTGCACGCTGGCTCGACCCGCCAAAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAACCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9242-8972 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000024.1 Streptomyces radicis strain DS1-2 contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9241 28 100.0 33 ............................ TGGCGACGCCCCCCGCCCGTGACCAGGGGCGGG 9180 28 100.0 33 ............................ CCACTACAACGAGGTATGGGGAGACCGAGAGTC 9119 28 100.0 33 ............................ TCAGATCGGGTGGGAAGATGTCCCGCTTGACGA 9058 28 92.9 33 ..............C..A.......... CGGGGCGCTTCATCTCCTGGAGCGGTACCGGCT 8997 26 89.3 0 ....................--.....G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTCGCCCCCGCACCTGCGGGGATGTTCC # Left flank : GGTGGCCATCGCCTCGGCGAGAGTCCTGCGGGTCGATGCGGGGGAGTCCGGCCACTTCATCTCGATGTAGTTCCGGGCGTGCTCGTACCAGCTCACCTCCCCCTGCTTGCGGAGCTCTGAGAGTGGCAGTCCGGTCGCCTCATCGAAGGCTTCCCCGCGTTGGACGGCGACCATGAGCTGAGCCCGGCGGTTGTCGGCCAGCGTCTTCGTGCGAAATGTCGCTGAGTGGGGCGTGGTCCCAACTTTCCAGCGGACCTCCGCGGACTGTTGCTTCGTCCGCTGACGGACGCTCCAGATCTTGATGTCGAATGTGTGGGACAAAGAGATGTTCTCCCTCCGCGGTGGCGGCACCCGGAGCTACCGGAGGGCCGCTGAGATGTCGTCACACGGTTGTGTCGGCCAAGCCCTCCAGCCATTCGTCCAGGTCGGAGCGAAGGACCCGGATATGGCCGTTGGGCAGCTTGTGGAGCCGGGGCGCTTGTCCTCGGCTGCGCATGCGG # Right flank : CGCCGACTCCAGGGCGGCGTTGGTGAGGTGGGCGTCAGTTCTTCGGTGTCCGTGAGCGTGCCATGCGGGCGGCGAGGCGGCGGGGGGCGTGGTGGACGGCGGTCGCGTAGAGCTTGAAGTGCCGACCGGCGACGCTGCGCGGCCTCCTCCGCCGCAGGTCCTTCATGGCCTGGTCGACGACCTGGTCGACGGACAGCCAGATCCAGTCGGGGATGGTGTCGATGTGGGGAGCGCCGGTGTGGGTGAATCCCGGGCACACCGCGAGGACGCGGACGCCACGGGGGGCGAGGTCCAGGCGCAGGGACTCGCTGAAGTGGATGAGCCACGCCTTGGCCGCGCCATACGTTCCCGCGGGGAGAAGACCGGCGACGGAGGCGACGTTGAGGATCGCGCCATGGCCGCGTGCGGTCATGCCCGGGATGGCGGCGTGGGTGAGCCGCAGGGGGGCGCGGACGAGGAGGTCGAGCATGCGCTCCTCGTCGGCGAGCGCGCCGCGCGGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCACCTGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89020-88505 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000028.1 Streptomyces radicis strain DS1-2 contig0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89019 29 100.0 32 ............................. GTTCCCGTGCTGGGGCTGCTGCCGTGGGACGA 88958 29 100.0 32 ............................. GTCCAGCCGATGGAGGCCGTCGATCCTGGGGT 88897 29 100.0 32 ............................. TAGGTCGTTCATGTGGGCGACCAGGTCGTCGA 88836 29 100.0 32 ............................. ACCCGCAACATCGCGGCGGCCGGGATGGACCT 88775 29 100.0 32 ............................. TCGTCCTACTCCGACCATCAGTGCGTGGGCGT 88714 28 96.6 32 .................-........... GTCAACTTGTCCGCGCTGCGCGTCGCCCCGGA 88654 29 100.0 32 ............................. AGGGGCGTGTACGTGTCGGACGCCAGCTGGAT 88593 29 100.0 32 ............................. GCCGAGCGTGTCGAGCTGCCACAGGACTTGGC 88532 28 89.7 0 ................T.......-..A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GACGAGATAGCGGAACGTCTCCCGCAACGGCGCCGGGTCGGAGCTGTCGGCGTCGAAGAGGTACTGGGTGTCCGGCAGCACGGCGAGGGCGAAGCGGGGGCTGTCGCCGTCGAACCGCCCGCCGCGGCCTGGGCGTTGGGCCGGGGTGGCCGCCGCGGCGGTGGAGGCGGCCGCCGCGGTGATCGCGGCACCGGCCGCGGGAACGGTGACCGCGGCCTGAAGCAGCCTGCGTCTCCGCACTCCTTCGCCGTCATGGGTATGCGCCATGGAAGAGCTCCTTGCACTGGTCGCGCATGTCAGCGGCAGTGTGCGGAGCCCTCATGGCCACTCGATGGCAACGGCCTGAACCCCCGGCCACGGCCCTCCGCCGGGCGGGGAACGGCGAGATCGGACGCGAGTTGAGGTGACGCGGTGCGAGGGGTGGACAATGGGCCGCGTGCAGGGGCCCGGCAGAAGGTCACGAAACGGCAAAGCGTCGCTGATGCCCCAGCTCAAGAGGT # Right flank : GGGCTGCCCGCGTGGGTCAGGGCGTTCGATGCCAGGGTGCGGGCCGTGGTGATCGGGTCGGGGGTGGTGGCCAGGGCGTAGAGGACGGTGGCGCCCTCGTGGAGCAGGACCAGCTCGTCGCCCAGGCGGCGGGCGGCCTCCGCGGGCAGGCCCGCGGCGCGGCACTGTTCGGCGAAGCGGGCGCGCAGCCACCGTTTCTGGTCGGCGATCACGGCACGGCCGGGGTGGTCGGGGTCGGGCAGCTCGGCGGCGGCGTTGACGAACCCGCAGCCGCGCGGGCTGTGGGCCGTCATCCAGGCGCCCAGCGCGTCGAACGTCTCGAGCACCCGCTCGCGCGGCGACCGGCCATCGGCGGCGGCGCGGTCGAGCCAGTCGGTCACCCAGGCGCGATAGCGGTGGTCGCGTTCGCCCAGGTACGCGACGATCAGGCGGTCCTTGGAGCCGAACCGCTCGTAGAGCGTCTTCTTGGTGACCCCGGCGTGGCGCGCGATGAGGTCGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92941-92547 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000028.1 Streptomyces radicis strain DS1-2 contig0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92940 29 100.0 32 ............................. CTGCAGGCGGACGGGCGCACGGACCCGGCGTC 92879 29 96.6 31 ............................C GCGAGAGGGGCGCACACGGCGCGTCGCGCGC 92819 29 100.0 32 ............................. TCGCCGAACCAGCGAGCCGCGGCGGGCTGCTG 92758 29 100.0 32 ............................. AGCCGCTCCTCGTCCTCGTCGGCGGACCAGTA 92697 29 96.6 32 ..........T.................. CCGCTGGGCAGGCCACCATCCGCACGGACGTC 92636 29 96.6 32 ........................G.... GCCGGTGGCACATCACCGGCGTTGGGGACCGG 92575 29 82.8 0 ..GC...................CG.T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTTTTCCCCGCGCGAGCGGGGGTGCTCCG # Left flank : CAACAGGATGAAGGCATGGCGGGGCATCGCAACCCGCTACGACAAGACCCCGGACAGCTACCTCGCCGGCCTCTACCTTCGCGCCTCGATGATCTGGATCAAGGACCTCACACGAGCCACCCCTTGATCACAACTAAATACGCTCCCTAAGGCTCCTGTTGGCTGGG # Right flank : CTGCGGCGGGGGGACGAGATGGTGGCGGTCGGGTGCTCCCCGCGTCAGCGGGCCCGCGCGTCAGGCCGCTCAGCGGTCGGAGTGACGTCTCAGGTGTGGGATATCCTCCCGGATATGGGAAGCACGGCGGATGGGCGGGACGCACGGAGCGGCCCCGAGGACCTGGGCGAGGGGATCGAGGCGAGGCTCGCCGGGCGGCTCGCCCAGCTGCGGGGTGAATTCGGGTGGTCCCTCGACGAGTTGGCGGGGCGGACGGGCGTCAGCCGTTCCACCCTGTCGCGGCTGGAGAGGGGCGAGATGAGCCCCACCGCCGCGCTGCTGGGGCGGCTCTGCGGCGCGTACGGGCGGACGATGTCGCGGCTGCTCGCCGAGATCGAGGCCCACCCGCCGCAGCACGTGCCCGCGGCACGGCAGGCGGTGTGGCGCGACGAGACATCGGGGTTCGTGCGCCGCTCGGTGTCCGCCCCGCACCCCGGGCTGCGCGGCGAGATCGTCGAGGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 208188-208582 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000004.1 Streptomyces radicis strain DS1-2 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208188 29 100.0 32 ............................. TCGTCGGGCAGCTGGTTGTTGCTCAGCCGGTC 208249 29 100.0 32 ............................. ATGTTGAACTGGCCGCCGCGCTCGACCAGTTC 208310 29 100.0 32 ............................. ACGGCCCTTGAGCCCGACGAGCCGAGCATCGG 208371 29 100.0 32 ............................. CTCTACCGGGTCATCGAGCCGGAGACGTGGGC 208432 29 100.0 32 ............................. ACGGGGATGCGGACGCCGAGCGCCGTCCGGTT 208493 29 100.0 32 ............................. ACCATGTGGCGCAGCACGGTGGTCGCAGGCGC 208554 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTCCTCTCCGCGCAGGCGGAGGTGTTCCG # Left flank : CACCGCGACTCGCTCGTCAGTCACGGCACTATCGATAGCAAGCGCCACTGACAGTGAGTCGTCCCGTGAACTTTTCCGGCCTTGTGCGGATAAGCGATGAGGAGCAACTTCCAGCCAGATGCGAACAAATCAGGATTCCCGGTCGAGCCCAGTGGACGGTGGTCCCGCGCTTGCCGCCACCTGCGTCGAGCCTCGTCAGGGGCGTCGACGGGGCTTGCGCGGAGCGGACCCCTCGGGTCACCTTCGAGACAGATCCAAGGCGAGCGCGGCATCCACCTCAGCCGTCCGAAAACGCCACGGCTACACACCCGTTGACATATAGGCCATGCGTGCGACGCAGCTACCTTCGGCAAGGACCGCCCCGCTCACCGGCACCCTCGATCCACTGCCCCGCACGCACGCCTAGACTCCCAAGCATGACAGCTGGACCCCACCACGAGCAGCGCCGCAACAACGGCAAAGAAACGGCAAAGCCCCTCTAACGCCGCAGGTCAGGAAGT # Right flank : GGCGGAATCACCGTCGCGGTCATCGAAACGCGCACCGCGCGCGACACACGCTCCCGCGCCCTGACCGTGCACCCGCGCACCATCGAGACGTTCGCCTCCCGCGGCGTGCACCACCCCTTCCTCAGCGAGGGCATGCCGCTGTCCGGCGGGCACTTCGGCATGCTCGATTCCCGGCTGAACTTCCGCCGCCTGCCCAGCCCCCGTCGACCACGCCCGACGCCCATCAACTGACCAGCCCCTCCACCACCTCGCCCGGCCCGGCCTGCGCGTGCGCACCGGCACCCCGCGCCTGCTCCCGGCCGACTGGTCCGGCATACGCGCCGCCCTCATCCGCCCCGACGGCCACGTCGCCTGGGCAAGCGCGGACAGCCACGACACCACGCTCGTCAACGACCTCACCGCCGTCCTCGCCACCACCCACCGGAAGCGACCCGGCGGCGCGTCCCCGGGTCGGGCCGTTGAGGCCGCTCGCCGAGTACCCGCGCGAAGAGCGCCTCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCAGGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 219001-219641 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000004.1 Streptomyces radicis strain DS1-2 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219001 29 100.0 32 ............................. CTGGTCGGCACCGTCGCGCCGCCCGCCCCGCT 219062 29 100.0 32 ............................. GGTCTCTGAGGAGGAACATGACGACGTCCATC 219123 29 100.0 32 ............................. CTGCTGTCCGGTACCGCGATTTCACCGCGGCA 219184 29 100.0 32 ............................. GTGCTCACGATCCCGACGGAGGGCGGCGAGAT 219245 29 100.0 32 ............................. TACTTCGCGCTCATTACGGGTGAGCGGGCGTT 219306 29 100.0 32 ............................. CCGCCGACGAACTGCCCACCGAGGACATCCTC 219367 29 100.0 32 ............................. ACCTCCTCGACACGTTCTCCGAGTACAGCACG 219428 29 100.0 32 ............................. GACGCCGTCAGCGACGCGATCGGCGAACGCGT 219489 29 100.0 32 ............................. TTCGCACGCGGATCAGACCATCCTCCGCAGCC 219550 29 100.0 32 ............................. TTCCTGGACGCGGTGACCGCCGAGTCGTTCGC 219611 29 89.7 0 ..............C.....C....G... | C,C [219635,219637] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CCGGCTCGTTCCTCAGCCGCGCCAGGACCGAGATCGGCCACGCCGAATACCTCTGCCGCACCCCACCCCTCCGCCTGATCATCCGCGTCCGCTCAGGCCACCACCACCTCGCCGGATGGCCCGGCGAAGGCCACGAACACGCCGCCCCCTGCCCGTTCCACAAGATCCACCCCACCGTCTCCGGCCGCGCCCAATCAAGCAAACCCACTGCCGCAACCAGGGCATCCCAGTGATCGAATGGGACACAACGCAACCGATGTCATACCTGACGCGACGTCCGTGAGCTTGTCGTTCAACGTCCAGACGTGATCGCAACCACGAATCGGCCCTTCGCCCATACGACCACGTCATGCGGCGAGGTAGCTTCGAGTCAGCACCTCCCCGGCGAGACATGGACCGAGCGGAAGGCAAGGCACATGTGCAACCCCAGACATGCCACAGCCCCGACCGCGACACATCACGAAATGGCAAAGCACCCGTAACGCCCCAGCTCAGGAGGT # Right flank : GACTCCAGGGCGGCGTTGGTGAGGTGGGCGTCAGTTCTTCGGTGTCCGCGAGCGTGCCATGCGGGCGGCGAGGCGGCGGGGGGCGTGGTGGACGGCGGTCGCGTAGAGCTTGAAGTGCCGACCGGCGACGCTGCGCGGCCTCCGCCGCCGTAGGTCCTTCATGGCCTGGTCGACGACCTGGTCGACGGACAGCCGGATCCAGTCGGGGATGGTGTCGATGTGGGGAGCGCCGGTGTGGGTGAATCCCGGGCGCACCGCGAGGGCGCGGACGCCGAGCGGTGCACGGCCATGAGCCGTCCGGAGCGAGATGCGCTTGCAGTGGGAGAACGGCGTCATGGATCTCGATGGTCTGCCGATGCCCCGCAACGCGAGAGACCCGCGCGGCCCGAGCAGCTGACGCAGCCGCGTGGGTCGCGGCGCGGCCAGCACGACCGTGGGAACGGCCGCGGACAGGTCCCGCCACAGGGGCCACAAGACCCGGACGAGACGAGCCTGTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44465-45232 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000046.1 Streptomyces radicis strain DS1-2 contig0046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44465 29 100.0 32 ............................. TGGGTCGCTCCAGAGAAGAGCCGCATCACGCT 44526 29 100.0 32 ............................. ACGCTGACCTGGCGGGGAACTCCTACTGGGCC 44587 29 100.0 31 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGG 44648 29 100.0 31 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGG 44709 29 100.0 33 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGGCG 44771 29 89.7 32 T.CT......................... ACGTGCCCGCCGCCTGTCATCCAGATGCTGGG 44832 29 96.6 32 ...T......................... CCGTTCCCGCCACCGATCCCCGGAGACTACTG 44893 29 96.6 32 ...................A......... CGGTTCATGAACCCGTCGAAGCCCCGCGAGTC 44954 29 100.0 38 ............................. TCGACGTCAAAACCGCAGCCGCGACCGACCTCGTGCGC 45021 29 100.0 32 ............................. GCCATCTGCGGCACGTGCCCCGCCGCCGCAGC 45082 29 93.1 32 ...T....................C.... GGCGGGCGGCTCAGTATCCCCCAGCCCCGCGC 45143 29 93.1 32 ...T....................C.... TGCTTCATCGAGGCGGCGTCCTGGGCGCTGGA 45204 29 93.1 0 ...T....................C.... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.1 32 GTTCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : ACGAGCTGCTGGCCGTCTACCCACCCACCGAGCTCGTCTGCGTTTCGTGCATCGCGGCGGGCGCGGACGCGCTGTTCGCCGAGGCGGTGTTGCAGCGCGGCGGGCGGCTGGTCGTGGTCGTCCCGTCGAGGGATTACCGGTGGAAGAAGGTGAAGCCGGAGCACGGCGCGACGTTCGACCGCCTCGTCGAGGCGGCCACGGAAGTGCACACGGTGCCGCGCGAGACGGCTGACCGCGAGGCGTACGAGGCCGCGAACAAGGTGTTGCTCGAACGCGCCGATCGCCTCGTCGCCGTGTGGAACGGCGCCCCGCCGAGCGGAAAGGGCGGCGGCACGGCGGATGTTGTGGTCGAGGCACGGGAGGCCGGGCTGCCGGTGGATGTGGTGTGGCCGAAGGGCGCGGCACGGCGGGAGCCAACCCACAACGGCGGCACGCCCCCGGCGTCCGTCGGCAACGATCACGGAATGGCAAAGCCTGGCTAACGCCCCAGCTCACGAGGT # Right flank : CCCGAGACGGCTAGGGAGCGTATCGAGTCGTGATCAATCTGCGGGATTCTCCCTCACGGTGGGGCCTGGACCGGTAGATCTTCTTGCGTGACGCGAGTGCAACTGACGGACGACGAGTGGGAGTTCATCGGGCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : GTTTTCCCCGCGCGAGCGGGGGTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 211084-210872 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDY01000009.1 Streptomyces radicis strain DS1-2 contig0009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211083 29 100.0 32 ............................. GCAGGTCATCGGAAATGTAGAGGCTGAATCGG 211022 29 100.0 32 ............................. CCCCCGATCGGGCGAGGGGCCCAACCGGGGGA 210961 29 100.0 32 ............................. ACCTGCTCGGCATGCAACGGTCAGGGGGCCCA 210900 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : TCAAGTTCCAGGAAAACGAGAAGGCGTCGGTCGCGGCGTTCGAGCTGGTGCGCGAGAGGTTCACGCTGGGCGCCGTGCTTGATGCGCTGGAGCGCGTATACGCGAAGGTGCGCGGGGCGGGGACGACGGCGCGGCGTGACCGCGGGGTCAGCGACGCCTCGACGCTGAACTCCCGGACGGCGCTTCGCCGGTGGGCCCCGACGCGCCTCCCGGAGTGCGGCCAGCGCCGGGTGCTCGGTCGACAACTCGGCCGCGTTGAGGCGGAGATCGCGCGGACGCCGGTGCGCGCCTGTGGCGAACGTGACGCATCGTCGAGGTGAAGTGCCCGTAGGTGGTCAACGCCGACGCTCTCAGCACTTCGCGGCCCCCGGCCCACGCGAACTCCTCTATACTCCTCAGCCGTGTCAACGCTGAGTCCACCCGATCCCCCGGCCCACGCAGAGCCGCACCCGGCAGGTCACGAAACGGCAAAGCGCCGCTAGAACGCCAGGTCACGAGGT # Right flank : ATGAGCAGGATCGAGAACGGCCGCCTGACGATCCGACGCCTCGAACTCGAGGCGCTGCTCGGGCTCTGCGGCGTGACGGACGAGGCGACGGTGGCCGCGTTGACCGCCATGCCGCGGCAGGCCCGCCAGAAGAGCTGGTGGCATCAGTCCAGCCAGGACCTCGACCCGGACTTCGAGGAACGGCTCAACGTGGAGGACGGCGCGGCCAGGCTGCACTTCTTCCAGCCGCTCCTCGTGCACTGCCTCCTTCAGACCCCCGAATACGCCGAGGCGACCATGCGCAACGCCTGGCCTTCCGCATCACGGGAGGAGATCGGGACGTGGGTGTCCGAGTGGCTACGGGCGGACGCCCTTCCGTTCGCCGTCTGCCGCTGTGGCTTGTCTCGTCGGGGTGCGGGTCAGTGATGGCACCTACGGGAGGGGGGCGCCGGGTGACCGGCCGTCCCGGTAAACGGTCGGTCTCGTCGTTGGCCAGGACCGTTCGCCGAACGGGCGCAGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //