Array 1 777270-778518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000007.1 Streptomyces sp. CB02056 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 777270 29 100.0 32 ............................. GCGGGGAAGTCGACCATCATCCCCGCCGTCCC 777331 29 100.0 33 ............................. GCCGTCGAGGTCCGGGAGCTGGAGGGCCCCGCG 777393 29 100.0 32 ............................. ACCTCCACTGGTGCAAGGGTGAGCGTGGTTTC 777454 29 100.0 32 ............................. ACCACGACTCGGGGGTCCGGGCGCTCGCCCGG 777515 29 100.0 33 ............................. TGCGCTACACGCTGGCGGCGGACGTGGTGCTCG 777577 29 100.0 32 ............................. TGGAGGGCGCCGGCGTTCTCGAAGTACGCCCT 777638 29 100.0 32 ............................. GGTGGCCGATGTAGCCCCTCATCGACTCCACG 777699 29 100.0 32 ............................. GGGGCACCGACCATGCTCGGCAGCATCGACTC 777760 29 100.0 32 ............................. GAGCTCATCATCACCGCCGTCACCGGCACCAC 777821 28 89.7 32 .............GA......-....... TCCCCACCGCCGACCTGCGCCGATGCGCCGAC 777881 29 100.0 32 ............................. TCTCCGGCCTGCTCGCCCGCTCGATCGTCGTC 777942 29 96.6 32 ............................A ACGAGCGCCACCAAATGTCCGAGCAGACCACC 778003 29 100.0 32 ............................. TGAAGGATGCGGGCCAGGGAGGTCAGGCCGGG 778064 29 96.6 32 ........................A.... ACGGAACGAGACGGCGGTAATGGTGCCGGGCT 778125 29 100.0 32 ............................. GTCCGCCTGATCGACGGCAAGGCACCGGGGCA 778186 29 100.0 32 ............................. ATCTGCACCAAGTTCAGCACCGAGGCGTACAG 778247 29 100.0 32 ............................. GGCGCCTCGCTGGCCGCGATCCCGCTGGTCAC 778308 29 93.1 31 ................T.......A.... CGGCCAACCCCTGGCTCGACCCGCCCACTTC G [778330] 778369 29 96.6 32 ............................G GGCTGCCCCGGCATCGCCAGCCTCACCACCCG 778430 29 96.6 32 ............................T GGGCGGGCGCCCGCGTAGGCGGCCATGCCCTT 778491 28 96.6 0 .................-........... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.4 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CCGACCGCACCGGCCCCTACTCCTGGTGGTCCTACCGCGGCCGCGCCTTCGACAACGACTCCGGCTGGCGCATCGACCTCCAGGTAACCACCCCCACGCTGGCCGCCCGCGCCACCGACGCCCGCGTCGAACGCGCCGACACCCACGCGGAGCGGTGGTCCGACCACGCCCCGGTCACCGTGGCCTACGACGTGGACAACTGACCGACGCATAGCACCACTTGGGCAAACTGGAGGTTCCCCGGTGCGCGGTCGTACCGCGCACCGGGGCACCTCCTCACCCCGCCGTCCCCAAGCGTCTTCGACCCGGGAACCTCCACCGTGCCCCTGGTCAGCGTCAGCCCGCCTGCGAAGTCCCGCTCGCCACTTGCCATCCAGTCCACCATCACCACAAGGCCAGCCGGCTCCACCAACAACCCATGAGCTCCACTATGGATAGCCAACCGAATCGAACTGAATCAAATAGCGCTCGCTGAAGCGAATCACCGCAGGTCAGCAAGC # Right flank : CATGAACTCGGTGATCGCCGCGTTGACCTGCACCGGGTTCTCCAGGAATCCCAGGTGCCCGCAGTCGGCGACTTCCCGATAGTGGCAGCCACCGCCGCAGGGGCCGCCAGGGCCTGACTCCGGACGCACGAAGGCCATTGAGCCGTGGGGGGCGTTGCGTCCCCCCGCGGCCCCGCGGCCCCTTCGCGCCGCTCAAGCGGCCTCCGCCTCGAGGACCTCGGCCACCGGACGGCGGGCCCCGGCACGGGCCGGGAACGAGGTCAGCAGTGAGATCAGCGTGATCGTCCCGACGACCACGGCCAGCAGGACGACCGGGCTCGGCGGGTGCGCCGGCCCGCCCTTGCCCACACCGCTGAGGAGCGCGATGCCGCCGGGGATGCCCAGCAGGGCGCCGACCGTCACCGGGATCGCCTGCGCCTAGACCAGACTGGCGCTCACCTGGCCCGCGTTGGCGCCGAGTGCGCGGGCCACCGCCGAGGAGCGGCGCGCGCCGAGGACCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8366-9307 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000022.1 Streptomyces sp. CB02056 scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8366 29 100.0 32 ............................. CGCTCCCGGCGCGGCTTGTTCGCCTTGAACCT 8427 29 100.0 32 ............................. CGCCGTCGGCGGTGGGCGGTGATGGCCCGGTA 8488 29 100.0 32 ............................. ATCAACATCGGCGGCACCGTGCACGGCGGCCA 8549 29 96.6 32 ............................G CGCCCGCCACAGGATGAGCAGGCCGACCACGG 8610 29 100.0 32 ............................. GAGGCCCAGGCCAGGAAGCCGGTGAGCGTGCT 8671 29 100.0 32 ............................. TGCGGCGACTTCCTGTGGATCGCCACGTCCGG 8732 29 100.0 32 ............................. GCGCAGCGGGCAGAGATCCACATTGACACATC 8793 29 100.0 32 ............................. GGGACCTGGTCGTCATCGATCTTGATCTTGTT 8854 29 100.0 32 ............................. CAGCGGTAGGGCGCGCCCGCAGCCCGCCGCAC 8915 29 96.6 32 .....................G....... ATCAAGACCGGGAAGGCGAGCACCGCCAAGGG 8976 29 89.7 32 ........A............G......G TCGCTCGAGACCATGAGCACGGCCGAGCTCCA 9037 29 93.1 32 ....................TG....... GTCCGGTGGCACATCGGCAACCTGATTCGGGA 9098 29 89.7 32 .....................G..T.C.. AGGGCGTTGGTGTCTCCCTGTCCGACCGCTCT 9159 29 96.6 32 .....................G....... TTCCAGGTGTCCCGGGCTGCCGACCGGTGGCT 9220 27 89.7 32 ..............--..A.......... CGGTCTGGCGGAGCTGGGAGAGGAACCCGCCG 9279 29 89.7 0 ...A............T....G....... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 96.4 32 GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Left flank : TAGACCTTTTTCGAAAAGGTGTCGTTCGGCTGGCGCATCGACCTCCAGGTCACCACCCCCACCCTCGCTACCAAGGCCACCGACACCCACGCCGAACGCTGGAGCGACCACGCCCCGGTCACCGTGGCCTACGACGTGGACAACTAACCGGCCTGTCGCACCACTTGGATAGCCCAGAAGTGCCCCGGCGCACGGCACGCCCACGCACCGGGGCACCACTCCCACTTCCCCCGGCCCCGCCCATCCGACGGGTCACGTCCCTCGCGCTTCGCAGGCTCGTTCCCGCTGTGGCCGCCGGTCCCGAGGCGCCTCCGCCGGCTCCCTAGTCAGCACGGGGCACACCAGCGAAGTACCGCTCGCCACTTGCTATCCAGTCCACCATCACCACAAAGCCAGCCGACTCCACCACCAACAACCCATGAGCTCTACTATGGATAGCCAACCGGTTCGAACTGAATCAAATAGCGCTCGCTGAAGCGAATCACCGCAGGTCAGCAAGT # Right flank : CACAGCACCACGCTCGCCGACCACGAGCGGCACCCGGTCGAGGGTGAGCGGGCCCGGACTGCGGCCGACGAAGTGCGGTAGGCGGACCGGCGACAGCTGCAGCCGGTGTCCTCGGCGTCGGGATCATCTCGGGCTACTGGCCGCGCTGGTGGCTGTCCTCGCTGGGCTCCGCCTCTGAACTACCGCGCCCCCGCTCGGCTTCGGCCGAGCGGGGGCGCGTTCGTCTTGTGGTCGGTCGGCAGCTACCCGAACGGCAACGTCGCGGTGCTGCGGGCCGTCAGGGTACGCGAGTAGTCGGCTGCCGAGGCCGTCAGGGCCCGGTAGTTGATCACCGGGTCACCTGCGGCGACCAGGGCGGTGGCGCACCCCAGGCACCACGGCCGAGGGGGGTCCACGTCCAGGTCCTCGATGACTGCATCCGCCGTGCAGCACTCGGCGCAGATCGGCATGCTGCCGTCCTCCTGCTTGCTCAGGCCCAGGTCGAGCCGCACTGGGTGCAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11908-11452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000022.1 Streptomyces sp. CB02056 scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11907 29 96.6 32 ............................T TGTCCGACCTGCCGGAGGATGCCCGGGTGATC 11846 29 100.0 32 ............................. TCGGTCGCCTGGAGCCGCCTGAAGCCGGAGGT 11785 29 100.0 32 ............................. GGTCTTCGCCGCCGAGCGGGCCGCCTTCGCGG 11724 29 100.0 32 ............................. GTCGTCTGCGTGGGGCGGAGCCCCTGCAGGTA 11663 29 100.0 32 ............................. GTCGAGCACGCCATCGGCATGGGCGTCAACGG 11602 29 96.6 32 .............A............... TGGCCGCCGCCACCACCGTTGTTGACCACGAG 11541 29 96.6 32 .............A............... GTGATTGGGTGCCCGAACGGGCGGCCTTCGCC 11480 29 89.7 0 G.......T...................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 ATCGGCCCCGCACGCGCGGGGATGGCTCC # Left flank : AAGACCCTCCTCAGCCCGGAGGGCACCGAGATGCCCGACGTCGAGGTCAACGAACTCTGGGACGAACGCGTCGGCACCGTCCAAGGCGGCGTCAACTGGTCCGGCACCGAAGGCCCGCCGGTCCCCGCCGCCTCCGACCCGGGCATGGGCGACGACCACCTGGCCATCATCGGCCCGGAGTTCACCCAGGACACGAGCAGCCCATGACCGTCATCATCCTCATCGCCGCCCCCGAAGGCCTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAGCGCCGGTGTCTTCGTCGGCACCCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGCATCGGCGACGGCCAAGCCGTCCTCGTAGAGCCCGCCACCAACGAGCAAGGCTGGACCGTCCGCACGGCGGGCAAGGACCGCTGGAAGCCCGTCGACTTCGACGGACTGATCCTCTCGGCCCGCTCCCGCCGATAGACCCGCAGGTCACGAAGC # Right flank : CTACGAGACGCCGGTACGCGCGGCCAGTTCCCTCACGCCTGCCACTGTCATGGGTGCGTACAGGAGGTCTGCCGTCAGTGCTCGCAGTGCTGGTCGGCGGACCTCCTCCGGGGCGACCTGCTCGGTGAAAATCAGGGCTGCGACCGTGCGGCGGTGGTCGCCGAGGTGGTGCCACATGCGCGCGCAGTCCGTGCCGTACCGGGCCCGGCGCTCTGCTGTCGGCAGCCGTCCCGGGGTGATCCGTGCCGCGTACGGGACGCCCTCATCCGGGGTGCCCAGCGCTGTGTGCACGCCGATCCAGTACAGGTCGGCCTGCGCGGTGGTGGCGTCGACCGTGAACAGCTGGGATCGCGGCCGAGTGGTGGCGTCCGCCAAGCGGCCGACCGCGTCCTCGGCGCCCGCCATCAGATCGAGGGCGTCCGTGCGGCGGTGCCCGCACGCCGCCGTGTAGGCCGCTGTCATGAGCAGCGTCGCCGCCACCGCCCGGGAGGTGTCGCCCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACGCGCGGGGATGGCTCC # Alternate repeat : ATCGGCCCCGCACACGCGGGGATGGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 21686-22934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000022.1 Streptomyces sp. CB02056 scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21686 29 96.6 32 ............................T GTCAGACCGGGGTGGTAACGGCCCCCCAACCA 21747 29 100.0 32 ............................. CTCGCCACGCACACGCCACATCCGCACGGTCT 21808 29 100.0 32 ............................. AGCAGCGTCGTTGTGCGGGTCGCGTACGGGGA 21869 29 100.0 32 ............................. GCGGCCTCCTGCGAGATGAAGGCGTGGGTGAG 21930 29 100.0 32 ............................. CCCCGGCGGACGGCCCGGACGGTGGCGGGCAT 21991 29 100.0 32 ............................. TCGCCCACCACCTCGACCAGGCCGTGGACGCG 22052 29 100.0 32 ............................. TCGGCGCCGGAGATCAGGATGTCGCTGTCGTC 22113 29 100.0 32 ............................. CGCTACCTGCTGCCAGCGGACACCTACCGGAC 22174 29 100.0 32 ............................. TGTGCTCAGGCCGTCCAGGACGACGGCGAGCG 22235 29 100.0 32 ............................. GGCGTTGTGTCGTTCCAGCAGTTGATGGCCGA 22296 29 100.0 32 ............................. GCCCGGCCCCCGCCTACCAGCAGGTGGTCACC 22357 29 100.0 32 ............................. GAGCCGCCCACCGCTGGCATGCCGACCAGCCT G [22379] 22419 29 100.0 32 ............................. CACCCGGCCGCCCCCGCCCGGCTGTTCCGCAC 22480 29 93.1 32 A......A..................... ACACCGAAGGCGAGGACCTGGACACCTCGAGG 22541 29 96.6 32 A............................ AGCACCCTCTGCGGCGGCCTGGGCGGGTGCTT 22602 29 100.0 32 ............................. GTATCGGGTGGCGGCCGGAGCGGTTGCGCGAA 22663 29 100.0 32 ............................. CCGGTCGGGATCGCTGATGCCGGGGTAGTCCG 22724 29 93.1 32 .......A....................G GTGAGGATGCCGGAGCGATCGACGTAGTGGTT 22785 29 100.0 32 ............................. AAGTACGCACTCAAGAGGGCGGACTGGCGGCA 22846 28 93.1 31 ......................C...-.. TGGATCCGGGTAGCCGCTGTTTCGTGCTGAG 22905 29 75.9 0 .C....T.......G.T.T.C.....G.. | G [22931] ========== ====== ====== ====== ============================= ================================ ================== 21 29 97.5 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : GCTCAGGCCCGCCTGGCGGACCGCGGCCTCGCCAGCGGGGTCGAGGCACTGGAACACCGGGGTGGCCTTGCCGCAGTCATGGATCCCGCACAGCCAGGCGAACAGCCGTCGCCCCTTGCCCGGCCCGCCCGCGACGGCGTCCAGACGCCGCCGCGTCACCGGGGGCAGGTATCGGTCCCAGACGATCTCCGCCACGGCAGCGGTGTCCAGCATGTGCGACAACAACAGGTTGGCCGTCCCTCCGGCCCGCCCGGCAGACTTGCCCCACAGGGCACCCAACCAGCCCTCTACCTCAGGCGGGTACCACTGCCAGCGGTCATCGACCATCGCCTCGACCTCCATGTCCGAGTACGCTTCGGAGCCTAGGTCGGGGCACTGACAATCCACCCTGGATTCACGAAGAGACAACGATCGGCGCATGAGGTCTGCTATGGGAAGCCAACCGAATCAAACTGAATCAACCGGCGCCAGTTGACGCAGATCACCGCAGGTCAGGAAGT # Right flank : CGGCGGCCCCGGTCCGTCGTGGCGATGGGGGACTTCGTCCGGACTCCGCGGCGGGCTTCGGCGTGCGCGGGCAAGGCGGTGTCCAGGCGTCACGCCTGCGGGGGACGAGGCCGTGACCGATCCCGGCGGGTAGGAGTTGCAGGGGGCATGAGCAGTGCGTTCACAGAGTGGGGTGCGTCATGACCACCAGCCCGGCGAATCCGCGCGAGGTTTCCGACGGTAACTCCCCCGCGCCCGGCCAACCGGAGTTCTCCGCCTGCCCGTTGATCTTCGATCCGCAGTGCCCGGAGCTGCCCGAGGACGTGCTCGGCGGGCTGCGGGAGCAGGCGCCCGTCGTGCGGATCACCCTGCCCGGCGGGCTGCCGGCGTGGATGATCACCCGGTTCGACGACGTCCGGGCCGGGCTCGGGGACCCGCGGCTGGTGCAGTCCCCGCTCTCCGTGCCGGGGTTCGCCGGCGAGGACCCCCGCATGGCGCAGATCCGGTGGCTCGGCCTGCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 26386-27572 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000022.1 Streptomyces sp. CB02056 scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26386 29 100.0 32 ............................. GCGATGACGCGCTGGCCGACGGCGCCCGGCTT 26447 29 100.0 32 ............................. TACTCCGGGCTCGTGATCGGGCGGCTTCCCCT 26508 29 100.0 32 ............................. GCACGGCCGCGTTCGAGGCCGAGTCCGCCGCC 26569 29 100.0 32 ............................. GCGCGGCGGCCCTGGGTTCACCCCTACCCAGA 26630 29 100.0 32 ............................. GGAGAAGGCCGCCGCTGAAGCGGCCAAGCGCA 26691 29 100.0 32 ............................. CCCAGCCCCCTGAACTGGGGCTAGCCCCATGG 26752 29 100.0 32 ............................. GGCTGTTCGGCCGTATTCGTCCCGGCTTCGCC 26813 29 100.0 32 ............................. TACAAGCTTGTAGACGCCGAAGCCAACACCTG 26874 29 100.0 32 ............................. GCGGCTGGCACGTCTTCCCCCTGCTGCCCCGC 26935 29 100.0 32 ............................. TGCGGTTCGCCGCATTCCCGGCAGGTGCCGTC 26996 29 100.0 32 ............................. CAGCCGACCAGGAACGGCATGCCCTCGCAGCC 27057 29 100.0 32 ............................. GTGGCGCCCGCGGCCAACGAGATCCTCAAGGT 27118 29 96.6 32 ............................G ACGAAGTCGCCGTCGATGACGAGGAGTTCGGG 27179 29 100.0 32 ............................. CTGGGCCAGGCGCCGAAGCTCGTCCATGTCCT 27240 29 96.6 32 .....................G....... GCGGCGGCCACCGAGTCCTGGACGGCCAGGTA 27301 29 96.6 32 .....................G....... GCCGACAAGATCTTTTCGGTGCTGTCAATGAT 27362 29 93.1 32 .....................G......A CTTGAACTGTCGTCCCCGGTGTGGGACCAATT 27423 29 93.1 32 .....T...............G....... GACCGGGAGTGGCTCCGCCCCCTCTGCGACGA 27484 29 93.1 32 .....................G....C.. GTCACCCGCTGGCGGTGCTGGTAGTGGCTCAC 27545 28 89.7 0 ..............-......G...T... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Left flank : CCGGTGCCGGGCGGGGTGGCTCAGGGAGTGGGGCGGGCGAGGGTGGTGAGGTACTCCGCCGCGGTGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGCGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGTCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCCAGCGGTCATCGACCATGCCTCGACCTCCATGTCCGAGTACGCTTCGGAGCGTAGATCGAGGCACTGACAATCCACCTTGGATTCACAAATAGACAACGATCGGCGGATGAGGTCTGTTGTGGGAATCCAACCGAATCGAACTGAATCAATCAGCGCCGGTTGACGCAGATCACTGCAGGTCAGGAAGT # Right flank : CCCTACCTGGTAGGCCCGCGCAGAAGGGAGCCCCCCGGTGCGTACCGGGGGGCTCTCAACGTGGCGTCTCAATGCTGACCGAGTGGGCCCCTGTCGCACGGCGGCCAACTGGTGTGGGGATCTCGGGGCAGGCCCTCGAGAGTTGCCGAGTGGGGTGGCTCAGGTGGTGGGGTGGGCGAGGGTGATGAGGTGAGACGCCACGGTGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCACTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCTAGCGGTCATCGACCATGCCTCGACCTCCATGTCCGAGTACGCTTCGGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 28209-29458 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000022.1 Streptomyces sp. CB02056 scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28209 30 100.0 31 .............................. GTAGCGGTGGAATCCGAGGGAGTCGGTCAGA 28270 30 96.7 31 .............................T CGCGGTGAGGGTTGGGCGGGGCTTTGGCGGG 28331 30 96.7 31 .............................T TGTTCGCCGCCGCCGGCGGAATCTGGACCCT 28392 30 96.7 31 ............................G. TGAAGCTGGTCCAGCCGCCGAGCGCGGTCGC 28453 30 93.3 31 ............................GC CGGCCCTGTCCGCGATGACCGCGCTCGCCCA 28514 30 96.7 31 .............................C AGCCCGGCTTGATCCCCGGGATCGGCTCCAG 28575 30 100.0 31 .............................. GGGCGCCGCTGTTCGGTCCGCTCGGCGGATA 28636 30 96.7 31 ..........T................... CCAGTGGTTGACCAGGTGTTGTCTGTTGTCA 28697 30 100.0 31 .............................. CGTCCGGCATGCCGACGGTCGGCGGCTCGGG 28758 30 90.0 31 .....................G......GA GCGACGACCCGGCCACCCGGGAGGCGGCGGC 28819 30 93.3 31 ...........G.........G........ TCGCCGGGCTGTAGGCCCCGGATCCGGGGTT 28880 30 86.7 31 ...........G........AG......T. ATGTCCCGGATGCGCTTGCGCAGGCCCGCCT 28941 30 86.7 31 ...........G.G.......G.......T GGTCGATGCCGTAGTGCAGGGAGATGTCCAG 29002 30 90.0 31 ...........G.........G..A..... GCGGCACCGGCCTGTGGAGCATCAGCCTGCC 29063 30 93.3 31 ...........G.........G........ TGGAGTAGGTCGGCGTCGCCGAGGTCTGTGT 29124 30 93.3 31 .....................G.......C TGGCCGGCGCCCGCGTGCTGCTCTACGCCCG 29185 30 93.3 31 ...........G.........G........ CGACGTCGAGGTAGGCGATGTCGGTCAGTTC 29246 30 93.3 31 .....................G......T. AAATCAAGGACAGGCTGACGCGCATTGAGGC 29307 30 90.0 31 ...........G.........G.......C GGGTCAGGTCCGGGGCGACCCTGCCCGCGGC 29368 30 86.7 31 ....A......G.........G.......A TCAGCAGTCACCGCCGATCCGGCCGACGAGG 29429 30 86.7 0 ...........G.........G...T...C | ========== ====== ====== ====== ============================== =============================== ================== 21 30 93.3 31 GTCGGCCCCGCACTCGCGGGGATTGCTCCG # Left flank : GAGAGTTGCCGAGTGGGGTGGCTCAGGTGGTGGGGTGGGCGAGGGTGATGAGGTGAGACGCCACGGTGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCACTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCTAGCGGTCATCGACCATGCCTCGACCTCCATGTCCGAGTACGCTTCGGAGCGTAGATCGAGGCACTGACAATCCACCCTGGATTCACAAAGACAACGAGCGGCGCATGAGGTCTGCTCTGGGAAACCAACCGAATCGAACTGAATCAACCGGCGCCAGTTGACGCAGATCACCGCAGGTCAGGAAGT # Right flank : CCTACCTGGTAGGCCCGCGCAGAAAGGAGCCCCCCGGCGCGTGCCGGGGGGCTCTCATTGTGGCGTCTCGGTGCTGACCGAGTGGGCCCCTGTGGCACGGCGGCCAACTGGTGTGGGGATCTCGGGGCAGGCTCTCGGGAGTTGCCGGGTGGGGTGGCTCAGGGGGTGGGGTGGGCGAGGGTGATGAGGTGCTCCGCCACGGCGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACTTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCGTCGAGTGCGCCGAGGGCGGTGCTGCTGCCGCCGTGGTGGATGGCGGCGGCGCAGGTCGACAGCAGGGCCTGCCAGGGGACCCAGCCGTACGGGCG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACTCGCGGGGATTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131356-130737 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPD01000014.1 Streptomyces sp. CB02056 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 131355 29 93.1 38 .................A.C......... GTCCTCTGCCTCGGGGCCGGCCACTACCTCTCCATCCC 131288 29 100.0 37 ............................. ACGTCGATGCAGGTACCGGGCAGGTCGTCCGCCCAAT 131222 29 100.0 37 ............................. CCCCGGTGCCCGCCGGCGGTCTGCTGGTACTGACCAC 131156 29 100.0 36 ............................. GACCACAGGCAGCGCGGACGGGTTCGGCCGGTCCTG 131091 29 96.6 37 .........................T... TCGGGGATCTCGGGCTGTCCCGGCCCAACAGCTCGTG 131025 29 100.0 35 ............................. ATCCCGCTGATCATCACCCCCGGGCTGACTGTGAT 130961 29 93.1 38 ...................C.......G. CGTCGGCGGCGGCGACCTGGTCCTGTCCAGCCCGGGCC 130894 29 100.0 34 ............................. ACCGGCTGGCCAAGCTGCGCAACGTCCTCGTCCA 130831 29 100.0 37 ............................. ACCAACTGCACGCGGCCGGCATCCACACCGAGACCGG 130765 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 98.3 37 GTTGCAAGCCCTCCAGGGCTGATCACGAC # Left flank : CCTTCTCCGACGGCTATCTGGACGGCGTCTTCTCCGTCGAGGCCGCCCAGCACTTCCGCGAACTGACCGGCTTCGCCCGCGAGTCCGCCCGCGTCCTGCGCCCCGGCGGCCGGCTCGTCGTCGCCACCTTCTTCACCGCCCCCGGCCCCGACGTCGCCGAACGCCTCAAGATCCTCCTCGCCAGCTTCGCCGACGGCCTCGACATCGCCCACCCCCTCGACGACTTCACCACCTCCCTCACCCGCACCGGCTTCACCGACATCACCACCGAATCCATCGGCGCCGACGTCTGGCCCGGCCTCGACCGCTACCTCACCGACGCCGTCCCCGCCGCCCACTGGACCCGCCACTTCCTCCCCGCCTGGCGCGACGGCCTCCTCGACTACCACGTCCTCACGGCCATCCGCATCTGACCGGATGGTGGTCGGCCCTGGACCCGTTACGGGCCCAGGGCCGCTCACGACCCGGCAGGCGGCCGTCGGGCTGAAGACCCTCGGCAT # Right flank : CCGAGGGTAAAGCCCAAGGTCAGCGCACCTACGGGCGTCGCCGTAGGCAGCGGAAGCGCGGCGACCGGCCGGTACTGCAGCGGCACTGGTCACAGGATCTCGCCCGGCCCGCCGAGGGTGGCGCCGAGTGTTGCCCTGTCGATCATGTCCGGGGAGCGGGCGGTGTAGGTGACGATGCTGTCGTAGCTGGGGTCGATCACGCTATTGAGGGTGTGGGTGAGGGCGCGGTACTGGGCGGCGGTGAGTTCGCCGTGGAAGACGCTGCGCTGGGTCCAGTGGAGGTACTTGCGGCAGGTTTTCAATACTTTCGGGTTGCGTTCGGCTGCGGTGTCGTAGACCAGGATGACGAACATCGGCGGCTACCACCAGGGCCGGAAGGGCTTGTACGGCGTGCCTTCCAGACACAGCCGGACGAGCTTGAGTGCTTCGAGGTGGATGAGCTCCTCGTAGCTGACCTTCCGCTTCAGCGTCCGGTGGTACACCGTCGTCGCGAGTTCCTC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCCTCCAGGGCTGATCACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //