Array 1 1657-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000144.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1656 36 100.0 30 .................................... TGCCATCGGGCCACTATTGATGGGGATAGG 1590 36 100.0 30 .................................... TTCTGGGGACTTGTACTTTTCTTAGCAGTA 1524 36 100.0 30 .................................... TAGCCGTCCTCTTCTAAGTCAACCTCCTCA 1458 36 100.0 30 .................................... CAATAGAAAAAAGCTTCTTAGCTGATACGC 1392 36 100.0 30 .................................... GAACCTAGGTGACGAACCTAACGGAAAATT 1326 36 100.0 30 .................................... AATGCTTTGTGTGTTTCACTATTGTAATCA 1260 36 100.0 30 .................................... ATCCACAAATGTGAGCATTCCTTCTAATGC 1194 36 100.0 30 .................................... AGTGGACAAGGCGACTATTACGTTAAAAGT 1128 36 100.0 30 .................................... TCGCGAATCGGACACTATGCTGCGTCTTTC 1062 36 100.0 30 .................................... TTGCAGCTAAGAATAACAGAATGATGTTGC 996 36 100.0 30 .................................... TGCAAACTTAAGATTATCATTGTCGGAGGC 930 36 100.0 30 .................................... CCATGTCAATATGAAAGCCGTGCAAGAGGA 864 36 100.0 30 .................................... TCAGAAATAAATATAATTTAGGTGAAGACG 798 36 100.0 30 .................................... TATTATTTTTGTTTATTAGTTTATTGAATG 732 36 100.0 31 .................................... CAGCTTTCTTGCGCGCTACTCATTTTCTTAT 665 36 100.0 30 .................................... ATTCATGTCACAGCGACAGACAAAACGAGC 599 36 100.0 30 .................................... CATTCGTTCTGTGCGTTCATACTTACATCG 533 36 100.0 30 .................................... CTGCTTCTACAAACCCAAACAATAAGCCTA 467 36 100.0 30 .................................... AAGGTTTCGGGAATAGTAACCCCAACTCGA 401 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 335 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 269 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGAATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CCTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3731-3563 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000153.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3730 36 100.0 30 .................................... ATCAAGTTGTTGATGCTGTCGTTGGCACAA 3664 36 100.0 30 .................................... AAGCGATAAATTCATCTTGTTGCTGTGTCT 3598 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : CAAAACGGGGATATGTCAGTCAATCCGCTATGTAC # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAACCCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCAATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 46442-46982 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000162.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 46442 29 100.0 34 ............................. CCTATTAATTTCGTGTTTTTACTGCTTAACATTT 46505 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 46568 29 100.0 36 ............................. CATGATTTCTTTGTCGTTCATAATAACGTATTGATT 46633 29 100.0 35 ............................. GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 46697 29 100.0 35 ............................. GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 46761 29 96.6 35 ..........T.................. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 46825 29 100.0 36 ............................. GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA 46890 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 46954 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1378-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000034.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1377 29 100.0 35 ............................. ATGATTTTGGACGCAGGTATTAAAATTCTGATGGC 1313 29 100.0 35 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAG 1249 29 100.0 34 ............................. TTGTTATGATATACACCTGTTTGCGGTCTTCTAA 1186 29 100.0 36 ............................. GTTGTTTCAAAATCTAGTACTACATAACTCATTTAT 1121 29 100.0 35 ............................. TGTGTAGCTTCTAATTCTGCAAAGTGTTGTTGAAT 1057 29 100.0 36 ............................. ATCATTGCTACAGCATCGAATAGCTACAGCATCAAT 992 29 86.2 24 ........................C.CTC CTACGCTTTTCTTATTTTTGTAAA Deletion [940] 939 29 100.0 36 ............................. TTTTGTTAGTTGATTGCACCGCACCTTTAGCGCCAG 874 29 100.0 36 ............................. AAGATAATAGTAAGTTTGCATTATCTTGTTGCGTTT 809 29 100.0 38 ............................. TTCGTCTTTATATTTTTTGAACATAAGTAGCCACTCTG 742 29 100.0 36 ............................. ACGCTCTCTGCGAGCTTTTGAGTTACCTTAGCCAGT 677 29 100.0 36 ............................. GTGCTACCTGTGGCCGGGTTTATTGTAGAGTAATTC 612 29 100.0 38 ............................. ATGGCAAGCGCATCTGTACCTGTTTTTGCTAGTTTAGC 545 29 100.0 35 ............................. AGATTCAGGAATAGCAGAATGGCGATACGAAGATG 481 29 100.0 34 ............................. CATAAAATTCTGCCACCGGGAAAAAGTCGCTATC 418 29 100.0 34 ............................. TCACTCGCTTTTCTTCGAGTTCACTTAAAACCTT 355 29 100.0 35 ............................. GCCTCATCAATACTTTTCATCATCCCATTAACTGA 291 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGATAG 228 29 93.1 0 .......................C....C | A [203] ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.9 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGTGG # Right flank : CTTCCTCTTAAAATTCAAACCCAAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTTGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 598-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000010.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 597 36 100.0 30 .................................... GCAGTTTGCTGTTCCTATTGAGGAAGTGGA 531 36 100.0 30 .................................... AATAGGGTATTTATGATGGCGCACGTCTAA 465 36 100.0 30 .................................... GTTATACTTGGCGTAGTAATTATTTTTGGC 399 36 100.0 30 .................................... AGCAGGTAAAGACATTACCATCTTACATCT 333 36 100.0 30 .................................... TTGAAATCAATCACATAGCATTTTCCATCG 267 36 100.0 31 .................................... AAGGCGGGTTTGTAGTATATGCGGATGGTAA 200 36 100.0 30 .................................... ACTTCTCAAAAATGAGAAACGAGCAATCGG 134 36 100.0 30 .................................... CGGCGCTCATGCAGACAACTAATAGTCACG 68 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : CTCGGAGGAAAGAAAAAATTCTGCGA # Right flank : CGGGGATATGTCAGTCAATCCGCTATGTACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 565-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJOJ01000100.1 Listeria monocytogenes strain BCW_3935 PROKKA_contig000100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 564 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 497 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCCATTTT 431 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 366 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 300 29 100.0 34 ............................. ACAACATGGAATGACGAAAGATTTGTATATCCTG 237 29 100.0 35 ............................. AATTTTTTCCGCGAAAAAGTGAAAGCATATTTAGA 173 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 109 29 93.1 35 ..........T...T.............. TACTTTGAAATATCTAAAGCTATCTCACTGTTTAG 45 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.5 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : TAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAATCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCG # Right flank : TTGTAGTCATCAACTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //