Array 1 150406-149297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXU01000004.1 Acinetobacter baumannii strain HEU2 336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150405 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 150345 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 150285 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 150225 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 150165 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 150105 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 150045 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 149985 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 149925 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 149864 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 149804 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 149744 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 149684 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 149624 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 149564 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 149504 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 149444 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 149384 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 149323 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 155496-157443 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXU01000004.1 Acinetobacter baumannii strain HEU2 336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 155496 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 155556 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 155616 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 155676 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 155736 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 155796 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 155856 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 155916 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 155976 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 156036 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 156096 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 156155 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 156215 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 156275 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 156335 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 156395 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 156455 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 156515 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 156575 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 156635 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 156695 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 156755 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 156815 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 156875 29 82.8 31 ..CGC........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 156935 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 156995 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 157055 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 157115 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 157175 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 157235 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 157295 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 157355 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 157414 29 82.8 0 .G..C...................AT..T | G [157418] ========== ====== ====== ====== ============================= =============================== ================== 33 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACACAAATATTAAATTATTGATTTTATAATTACTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCATGTCCGACTGTAGGACTTGAACTCAGGACCTATTTTATCCATTTTTATCAAAATTAAAATTTTGGGCATCCACCCATTCTTTTATGTTAAACCACTTTTTTGCAATATTTTCTACCTTATCTTCATGCATTACATCATACATAAATTTACTCTTAGAAATATATCTGATGCACTTTAGACCAGTTTCATCATAAGTTTCTAACATAGCTAAGAAAGATCCGCCAAAATCAATATACACTGGACACTTTGCCTCTAGCCAAGTACTTCTAGGTTTTTTCCAATCAAATTGATAATGTCCAAT # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //