Array 1 50-809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHE01000048.1 Streptococcus lutetiensis strain AM38-16 AM38-16.Scaf48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 .................................... TAGATAAGCCGCTTAAAGAAGCACCATTCT 116 36 100.0 30 .................................... ACACAACACACTATAGAGTTTCTGTTAACA 182 36 100.0 30 .................................... TTGTACTAATTTTTATAACCTAATTATAAT 248 36 100.0 30 .................................... TTATGGAAAGCAAAAGCCGTCACACCAGCT 314 36 100.0 30 .................................... AAAGCTATTAAGCGTCCTTACAAACTCAGC 380 36 88.9 29 T.G...............................CT ATGAAATGCCAGAAATACACACTTACAAT 445 36 100.0 30 .................................... GTGGTATGATTGGAACGCTTGTCATTACAA 511 36 100.0 30 .................................... AAAGCCATGAAGGAAGCTTTAGATAACATG 577 36 100.0 30 .................................... TATCCTTTCTGAATTCGTCTAAACTGACTT 643 36 100.0 29 .................................... ATTTCTGGGGTATGACAGCGTTTATCCTA 708 36 100.0 30 .................................... AATTAGCTGGTAAATTACCACCAACAGATG 774 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATTTAAGTAACCGTAAAACGCGATGGTTTTATATAAAACAAGTTTTTGGG # Right flank : ATTTAGAACATGAGGAAAGATAAAACTACAGTTTTTGTACTCTCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 99317-99484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSHE01000006.1 Streptococcus lutetiensis strain AM38-16 AM38-16.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99317 36 100.0 30 .................................... AATTCAACAAAGTGTTATTTAAAACTACGT 99383 36 100.0 30 .................................... TTAAAAATGGTGACACTAGCACTAGTAGAT 99449 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAAAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : CTTTGCCAGTAGCTGCCGATTAGTCGCGAGGTTTTTGTACTCTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //