Array 1 172222-174569 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMW01000061.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015008 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172222 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 172283 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 172344 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 172405 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 172466 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 172527 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 172588 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 172649 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 172710 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 172771 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 172832 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 172893 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172954 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 173015 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 173076 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 173137 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173198 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173259 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173320 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173381 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173442 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173503 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173564 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 173625 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 173686 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 173747 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 173809 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 173870 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 173931 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 173992 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 174053 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 174115 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 174176 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 174237 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 174298 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 174359 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 174420 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 174481 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 174542 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191077-193546 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMW01000061.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015008 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191077 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 191138 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 191199 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 191260 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 191321 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 191382 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 191443 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 191504 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 191565 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 191626 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 191687 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 191748 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 191809 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 191870 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 191931 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191992 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 192053 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 192114 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 192175 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 192236 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 192297 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 192358 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 192419 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 192480 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 192541 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192602 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192663 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 192724 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 192785 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 192846 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192907 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192968 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 193029 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 193090 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 193151 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 193212 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 193273 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 193334 29 100.0 32 ............................. GGTAGAACGGCGCTTGAGAACAGTATCAATAT 193395 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 193456 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 193517 29 93.1 0 A...........T................ | A [193543] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //