Array 1 164074-164307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFV010000003.1 Campylobacter coli strain 2016/2392 NODE_3_length_212356_cov_13.781344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164074 36 91.7 30 .GG...............T................. TGCCTTTAAAAGCTCGCAAGATGCTATGAA 164140 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 164206 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 164272 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : TTCAAAACCAGTGGGGCTAAATCAATTTAGGAAAAACACAAACAGAACAACTATATAAGAAGCGATAAGGAGACACTTATGAGGATCGAGCATTCACAAAATTTTTTACATAGCAAACGCCTTGTGTCGGAGTTGCTATCAAAAAGCAATATAACAAGCGAAGATACTGTAATTGAAATAGGCCCCGGTAAAGGAATAATTACGGAAGAATTATCAAAGAAATGTGGACAAGTTATAGGAATTGAATATGACAAAGAATTAGCACATTTGTTGCAAGAATCTTTCGCGAACAAATCAAACGTCAAGATTATCGAACAGGATTTTCTTAAATACAAATTGCCTAACAATGGAGTTTACAAGATTTGTGCGAATATTCCTTTCAATTTGACTGCGGACATCATGAAGAAGGTGTTGGAATTTGAAAATCCTCCAACTGATATTTACTTTATTATGCAATATGAAGCATTTTTGAAATACGCTGGAGAGCCGTATTATAACGA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 165547-165912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJFV010000003.1 Campylobacter coli strain 2016/2392 NODE_3_length_212356_cov_13.781344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 165547 36 100.0 30 .................................... CTTTTTTATTTTATAACCACAAATAAAAAC 165613 36 100.0 30 .................................... TAAACCCTTCTCCACCCTTTTGGAAGGGTG 165679 36 100.0 30 .................................... TAATCATAATACACTCTTGTTTCAAAACTT 165745 36 100.0 30 .................................... AAAGCATCTCTTAAATCACTATCTTGCAAA 165811 36 100.0 30 .................................... TTATAGTCGTGAAACAAGGGTTGCAATAGG 165877 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACGCATTTGCAAACAAATCAAAATCTCAATGGACTCGTCTGTAACCGCTATTGCATATGAGGGATGGCTAAATTTATATGATGTGTTCTTGAAATTCGTTTCGAGCGACAAGAAAGAAATTATTAGAGGGTCGGAGAAACATTTAAAAAACAGTCAGAAGAACCTGCACAAAATACATCGAAATCGCAATAACGGTTATTCAAAGACAAAAAGTTATAAAAAAAATAGTGAAAAAAAATAATGAAAAACGGATATTATTTATTTGCCTATGTTGAGATAAACAAATATGCTAATTACTACCAAATTGATACTAAAAGGCACGATCAAAATATTTCATTATGGGAATATTTTGATGGAAATTTGACATTATTAAGATATTGGGAACTTGAAAGGCTATCAAGAATTAAACATCATAACAAAGCATTTTCGACAAAAGAACAATTCATAAAATTTGTTAATCAGCTTTTATCTCAATTTGATTTAGATGATTCTAAATTGGT # Right flank : TAGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //