Array 1 58-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 58 37 100.0 32 ..................................... CACAACGTCGAGCATGTCCGTGCGGTACTTCT 127 37 100.0 34 ..................................... GGTGACACCAACGCGGATACCGGCGGAAAAGACG 198 37 100.0 31 ..................................... GGTGATGACGAATGCAAAGTGTTCCACGATA 266 37 100.0 33 ..................................... TGGACGTGGTAGCGCACTGAGCCAGGGCTCTCC 336 37 100.0 32 ..................................... AATTCGAATTGCGCGAACTTCGACATGTTAAT 405 37 100.0 35 ..................................... ACCACCTTGCAGCCCGAAGGCTCCAGAATGGCGGC 477 37 86.5 0 ................................TTCTG | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 98.1 33 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : TTTTTCTTCAAGCACCCTTGCAAGTGCTTGTCAGCATTGACGAATTCCGAGCGCAGAG # Right flank : GAAACCCGCTTCTCGGCGACGAGGGCGGGTTTTTATTTGGGCGGCGCAGGGCGGGCGGCGGCAACCTTGCCAAACGGCGAGGGCTCCGGACGGGCATGGGACATTCTGTTCCCGACCACACGAGAGACCGCTCTCAGCAAGGAAGACCGATGAGTTTCAGGAAGAAGACCCCGATGACCGCCACGCTGCTGCTGGGCGCCGCGATCGCGCTGATGAGCGCGCCGCCCACCCGCGCGCAGAGCCCGGCCGCCGCCCCGAGCGTGGTCGTGCCGGACCTGAACGACAAGTGCTTCGGCGACATCGACCGCACGCTGCGCGCCGCCGGCCTGAAGCCCAAGACCACCGCCGTGCACGGCCCGGTCGATGCCGACGCCGCGCCCATCGGCTGCGCCTACCGCCAGAGCCCCAAGGCCGGCACCCGCGTGCCGCGCGGCAGCACGGTGCGCTACCGCAGCTGGTACGAGGCCGGCTGAGACCGCCCGCCCAGCCCGAGACAGCCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2101-2828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2101 37 100.0 28 ..................................... GTGAACCATTCTTCACCACGACGGGTGA 2166 37 100.0 32 ..................................... ACGTGCGCACCGACGAAGGCAGATAGCAGCAC 2235 37 100.0 33 ..................................... CATGATTACATCCGAGCCATAGAGGAATTCAGC 2305 37 100.0 33 ..................................... AAGCTCAGAACGCTCATGATTTCTTCCTTGTGC 2375 37 100.0 32 ..................................... TCTTGCCGGCTACGCTGCATCGAATTCCTGAT 2444 37 100.0 33 ..................................... GGGGGGTGGTCCCCAGCGAAGCAATTGCCAAGG 2514 37 100.0 34 ..................................... GTGCTGTTCATCGCTGACCATCCCAAACGACTCG 2585 37 100.0 32 ..................................... GATCTCTTCACCGTAGGTCAGTGTGGTCTCCC 2654 37 100.0 31 ..................................... TGGCTGCACTGCTCGCATCCTGCTCGCGACG 2722 37 100.0 32 ..................................... TCCGTGTACGGCGTCGGCCTGTCGATGACCTG 2791 37 91.9 0 .......................A.........C.C. | T [2793] ========== ====== ====== ====== ===================================== ================================== ================== 11 37 99.3 32 GGCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : CCCCTCGATCCCGTCGCCGCCCCCGCTCCGGCTGAGGGGTCGCCGCTCGACTGCGTCGTCACCCGCCACGCCGGCGCGGCCGAGTGGGTGCAGCGCCGCCTGGGCCGCCCGGTGCGGGTGGTCGAGCACCTGCACCCGCACGAGATCGTGCCCGGTGCCCGCTACCACGGCGTGTTCCCGCTCAACCTGGCCGCGGCCATCTGCCGCGCGGGCGCGCAGTGCTGGGCCATCTCGATGCAGGTGCCCCCGACGCTGCGCGGCCAGGAACTGGGCGCCGACCAGCTCGACGCGCTCGGCGCCCGGCTGGTGCGCTACCAGGTCAGCGAGCTGCCGCCGCACCAGAACTGAACCGCCCGGCGCCCCGCGCTACAATGCGCCCCGCCGGTTCAGACCGAACCCCGTGGAGACGCCCCTCGCCGACAGTCAGCTTTTCGCCTCGTCGTTTTTTCTTCAAGCATCCTTGCAAGTGCTTGTCAGCATTGACGAATTCCGAGCGCAGA # Right flank : CGGTCTGGTGGGCGGCTCACGCGTCGCCCACCTGCCCCGCGATTTCCAGCAGCTGTTCCGGCGTCGGCCGGTCCCATCCGTCGCCGATGCGGGTCGTGGCGTAGAAGCGCACCATCTCGTGCAGCACCATCGGATGCTGCCAGCCGTTGGTCTGCAGGCGCTTGCGGATGGTGGGGTGGACGCGGCGCGCCTCCATGTCGAGCAGCAGCGACTGCACCAGGCGATCCTGCTCCGCCGTCGGCAGGGCCTCCAGCTCAGTGACCACATGCGCACGCCGTCGGCGCTGCCATTCCTCATGCCAGCGCGCCTGCCGCTTCTGCTCGGCCAGCTTCAACGCTGCATCGGAAAGATCACGGCGCACCGGGGCAGCCGCAGCCGATGAGCGCTCGGGCACCGACGGCGGCGCAGCCTCGGGCGTCCGGCCGAATTCCTTGCTGCGCTCGGCCGCCAGCACGGTGCGCAGATAGCGCGCCGGATCGCGCAGCGGCTCGGGATAGGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 52866-52547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================= ================== 52865 38 100.0 33 ...................................... CCACCGCCGTGGCGGGTAGCAGTACGACGGTGG 52794 38 100.0 33 ...................................... TCAGTTTCTGCCATTGGTAAGTCGGCGGTTGTA 52723 38 100.0 31 ...................................... AGGTGCTCAACGCAAAATTGCGCCGAGTGAA 52654 38 100.0 32 ...................................... CAGGCCACCTTCTTCGGAGATGCGGGTGATGA 52584 38 84.2 0 A................................TTCTG | ========== ====== ====== ====== ====================================== ================================= ================== 5 38 96.8 32 CGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : GCCGGTTCAGACCGAACCCCCGTGGAGACGCACCTCGCCGACAGTCAGCTTTTCGCCTCGCCGTTTTTTCTTCAAGCACCCTTGCAAGTGCTTGTCAGCATTGACGAATTTCGAGCGCAGAGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACCGCCCACCCTCGCTGAGGTATATGGGGTTTATAGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACTGGTCTGGCTGGACGTGAGCGCGGCGATCGACCGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACTCTCCGGCGCAAAGACGGAGATGTAAATCAACGTCTGACCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTGATGTTGAAGGGATTGAGACCCACCGCCGTGGCGGGTAGCAGTACGACGGTGG # Right flank : AAACCCGTTCTCGGTGACGAGAGCGGGTTTTTCTTTTTCTGGCGCGCGGTCTGGCGGCAATGTTGCGGCGCAGGGCACACGGGCCGACGGGCAAAGACACTGTGCTGCCGTCCCCACCGATCCGCTTCAGCGGCTCCGGGGGCTGTCGAATTCATCGGTGCGGCGCTGACGTCTTTTCGGACGGCATCGACCGACCGTGACCCGCACGCGGGTCGTGTCCCATGCCCTACCGACAGATCGCCGCCATGCCCGCGCAATCCAAGCCCAAGACCCTGACCCGACTGCTCGACCTGCTGCAGGCCATTCCCAGGCGTTCCTATGTGTCGGCGCAGACGCTGCACACACGGCTGGCCGAGCGAGGTCATGTCGTGACGATCCGCTCGGTCCAGCGAGACCTGCAGATGCTGCGCGAGCACTTTCCGCTGGAGGTCAACGAGAACAGCAAGCCGCACAGCTGGCGGTGGGGTGTCGAGGCAGACCAGGGCATTGGCGGCATGAAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 53245-53068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 53244 37 100.0 33 ..................................... CGCCCACCCTCGCTGAGGTATATGGGGTTTATA 53174 37 100.0 33 ..................................... TGGTCTGGCTGGACGTGAGCGCGGCGATCGACC 53104 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 34 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : GTCCGCTGGGTCGTCTGCTACGACATCCGCGATGCGCGTCGCGGCCTGCGGGTGCTGCGCTTCATGAAGGATCAGGGCCTGCCGCTGCAGTACAGCGTCTTCGTCGTCGAGGCCTCGGCGGCCCGCATGCACCAGCTGCTGCGCGAGCTCGAAGCGCTGATCGCCCCGGGCGTCGACGACGTTCGCGCCTACCGCTGGCCCGAGCACGCCGAGGCCCACGAGTTCGGCTGCCCCCGGGTGCCTGACGGGATCGTGATCCGCTCCTGCGACCCTGCGCCACCGCTCACCCGCCCCAGGGCTCGTGTCGTGGCCATTCCGGTGGCCTGAACCGTGCGGCCAATGCCGGTCACAGGGCCGATCCCCCGCTACAATGCGCCCCGCCGGTTCAGACCGAACCCCCGTGGAGACGCACCTCGCCGACAGTCAGCTTTTCGCCTCGCCGTTTTTTCTTCAAGCACCCTTGCAAGTGCTTGTCAGCATTGACGAATTTCGAGCGCAGA # Right flank : TCTCCGGCGCAAAGACGGAGATGTAAATCAACGTCTGACCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTGATGTTGAAGGGATTGAGACCCACCGCCGTGGCGGGTAGCAGTACGACGGTGGCGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACCCACCGCCGTGGCGGGTAGCAGTACGACGGTGGCGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACTCAGTTTCTGCCATTGGTAAGTCGGCGGTTGTACGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACAGGTGCTCAACGCAAAATTGCGCCGAGTGAACGTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGACCAGGCCACCTTCTTCGGAGATGCGGGTGATGAAGTCTGACCGGCTTCCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 5 67931-68383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 67931 37 100.0 32 ..................................... AGTCACCTGCTCAATGCTGCTCACCTCTCCAA 68000 37 100.0 31 ..................................... GCATGCCCAGTTTGACACCGATCCCGCGGAG 68068 37 100.0 32 ..................................... TCGTGATGACGAACAACCCCATTGCAAAGGCA 68137 37 100.0 33 ..................................... CAGTCTTCTTGGCACTCTTTTTCGAGCGCATGG 68207 37 100.0 34 ..................................... GGCGAAGCTTTGGGGGTTTCTTTCTGGGTTACTT 68278 37 97.3 32 .....................C............... AAATACAGGTCGCCGACGCCGATGTAGCCGAG 68347 37 83.8 0 ...........C...................GTCTC. | ========== ====== ====== ====== ===================================== ================================== ================== 7 37 97.3 32 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : CCGCAGGAGTTCATGGTGCTGGGCCTGTACGCGCTGGCGCGGCTCCACGAGCGCGATCTGCCCGGCGGCGCCGCATTTCGCGCGGAGGACCTGGACGAGCGGCTGCTGTCGGACCTGAACGGCGGCAGGGAGGTGCGCGGCCGCGACAACTTCAAGCCGGTGGGATCGAAGATCCTCAAGCGCCTGCGCGAGCAGGTGGGACCGGCGGCGGAGTGGCTGACGATCGAGTCGGTGCGCGAGCGCGCGCCCCACGTCAAGCACAGCCCGAGCGAGCTGCGCCTGCCGGCGGCCTGCCTGACGCTGAAGAACGCCAATGACTGGTGGCGCCTGCTGGCGCCGGCGCTGAAAAAGTCCTGAATCGCCGGCTACAATCCGCCCCGCCGGTTCAGACCGAACCCCCGTGGAGACGCACCTCGCCGACAGTCAGCTTTTCGCCTCGCCGTTTTTTCTTCAAGCACCCTCGCAAGTGCTTGTCAGCATTGACGAATTTCGAGCGCAGA # Right flank : CGAACCCCGCCAGAGGCCCTGGCGGGGTTTTTTGTTTCTGGGGTGGGGGCGCGGCAAGGTTGCCGCAGCGGGGCCCGACGCCGCCGGGGGCGGATCATCGCGTCCATTGCAAGACAGGGCGCCGCCCGAGAGGACACAGATGACCCAGACCCCCGAAGCCCAGGCGATCCGCACCGTGATCCAGACCGGCACCAAGGCCTACGTCGCCCGTGCGGCCGCCGGCGCCGCCACCACCCTCGCCGCCAGCGTAGGCGCCACCGGCGCGGTCGCGGCGGTGGCCCCGGTGGCGGCCGCGGCCGCCGCGGTCTGGGCGGTCTCCTCGCTGTGGGACGCCGTCTTCGACTGAGGCGCTCAGCCGGGCGGCAGGATCTCGCCGAGCGGCTGCAGCAGCTCGTCGCGGCTCAGGCCCTGACGCATGACGAGCTGGGCGGTCACCCACCCCGGGGTTTCCTTGAACTGCAGCGAGCCGGGCGCGCTGCACCCCTTCAGCAGCCGATGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 70475-70926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 70475 37 100.0 33 ..................................... GGTCCTGGGGATGCGCAATTGCTGGTTCATCAT 70545 37 100.0 32 ..................................... TTCTACCTGCTTGCGAAACTTGCGACGCAGTT 70614 37 100.0 33 ..................................... CCGTCTTGACGTGAGTGTCCACGTCAGCCACCA 70684 37 100.0 31 ..................................... GAATGAACTTCATGATTACCCCAGCGCCTTG 70752 37 100.0 32 ..................................... CAGGGCCGGTGCTGTACACACGATCCCACTCG 70821 37 100.0 32 ..................................... TGGTGACGGCGAACAAAGCTGCTGCGAATGCA 70890 37 89.2 0 ................................TCTC. | ========== ====== ====== ====== ===================================== ================================= ================== 7 37 98.5 32 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : GCACGCCGGCCGGCGAGGCCTCGCCCTGGCCGAGGATCACCGAGAAGCCGGCGCCCTGCGCCTGGCGGCGCCGCGCCCAGCGCTGCAGCACGCCCTGGAGCCGCCGCGCCGGGCCGGCCGAGCGGGCCGCATCGGGCGTGTGCATCACCATCACCGCGCGCAGCCGGCGCCCGGCCTGCTCGGCGCTGTGCAGCACGAACTGCAGCGTGGGCACCAGCTGCTCGCTGGCAAAGACGATCAGGCGCAGCGGCCGCAGGTCCTGGGGCGGCGTCGGCAGGTCAGGCATCGGAATCCTTGGCGAGGTGGGGGGCGCAACACGCGGCCCGCCATTCTCGCCGCACCGGAAGTGAACATCCCGGCGCTCCGCGCTACAATGCGCCCCGCCGGTTCAGACCGAACCCCGTGGAGACGCCCCTCGCCGACAGTCAGCTTTTCGCCTCGCCGTTTTTTCTTCAAGCACCCTCGCAAGTGCTTGTCAGCATTGACGAATTCCGAGCGCA # Right flank : CGAACCCCGCCAGAGGCCCTGGCGGGGTTTTTTCTTGGGGGCCACGGCGAGGCAAGCTTGCCGCGCGGCGGCCCGGGCGCAGGGCCAGGCGACACTGAGGCCCTGACTTCAACCGCACGACATCACCACGATGAGCACCCTGATCAGCTTTCTGGGCAAGAGCCAGCTTGACAAGAGCACCGGCTACCGAACCGCCACCTACCAGCTCGCCGAGGGCGTGCAGGCGAAGGTGCCCTTCCTGGGCATGGCGCTGGCGCGGCACCTGCAGCCGAAGCGGCTGGTGCTGCTGGGCACGCGCGGCAGCATGTGGGACGTGTTCTTCGAGTCCGAGGCCGAGGCGCGGGTGCTGGAGTACACCGACCACTGGGAGGCGCTCGGCCACGCGGTGCGCGAGGACCGCGTGAGCCAGGACATGCTCGACGACTACGCCGATCACCTCGGCCGCGAGATGGGCATGACGGTGATCTGCCGCCTGATCGAGCCGGCCCGCGACGAGGCCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 74177-74420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000022.1 Leptothrix sp. C29 Ga0416762_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 74177 37 100.0 32 ..................................... CTCGAACTTCTTCTTGTCCTGACTCGCGACAA 74246 37 100.0 32 ..................................... ACTTGCGGTCTGGTCGGACCACCCAGATCAGG 74315 37 100.0 32 ..................................... AGTACCTTCCAGCTGAATGATGCACGTTTGAA 74384 37 89.2 0 ................................TCTT. | ========== ====== ====== ====== ===================================== ================================ ================== 4 37 97.3 32 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : CGACTACAGCCCGCCGATCCTGGAGGCCGGCGCGGGCGCGGCCTTCGCGCAGATCGGCTGGTCGGCGCTGAAGTTCGCCCGCCGCTACACGCCGGCCGCAGCGGCGGCGGAGGTGTGCGCATGAGCGAGCGCTACTCGACCTGCCGCGAGACCAACGCGCTGGTGCGGCGTCTGGTCCGCCAGGCCTGGACCTACCGGCGCGGCAGCAAGCACGGCAAGCTCTCGCCCCCGGGCTGCGGCCTGTTCGTGACCATTCCCGGCACGCCGGGCGACTTCCGCAGCGTGCGCAACCTCGAGCGCGACATCCGCCGCCTGGCCGCACAGACCGGCGCGGCGCTGGCCTGGTGACCCGGCCGCTGCGGCGGCTACAATGCGCCTCGCCGGTTCAGACCGAACCCCCGTGGAGACGCACCTCGCCGACAGTCAGCTTTTCGCCCGGTCGTTTTTTCTTCAAGCACCCTTGCAAGTGCTTGTCAGCATTGACGAATTCCGAGCGCAGA # Right flank : CGAACCCCGCCAGTGATCCTGGCGGGGTTTGTCGTTTCTGGGGCGGGGCGGGACGCGGCAAGGTCGCTGCAGCGGGATCAGGCGCGGTGCCCGGCGGGAGCGTGATCGCCTTGGCGTGCGGATGTCACGCCACCAATGATCAATTCGAAAACAGCGGCAAACAATCCTGTATTTTCCATCGATTGAAAAAATGAATGTCATGCGGGCGGGGAGGGCCCGTCCCTCATGGCGAACCTGCATGTCCAGATCGACGAGACCGCACGCCCCGAGGTCGAGAAACAGCTGCGGCGCCTGCAGGCCACCGGTCGCTACTTCACCGACTGGGTCGAGGACGACGGCCCGCTGAGCGACCATCTGCTCGATCACCTGTTTGCGCATGCCCAGCCGGCGCGCTACCACGCCGCCAACCTCACGCTCGACGCGCAGGCGGAGTTCATCACGCTGGCCCTGCGTCCGGTCATCGAGGCGCCAGGCGTGCTGCCGCTGGCGCCGGGCTTCTC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 134134-126980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000007.1 Leptothrix sp. C29 Ga0416762_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 134133 37 100.0 35 ..................................... GCCCATCGGCAACCTTGGCGAATCCTGGCAGGGCT 134061 37 100.0 35 ..................................... GGAAGACCCCGAGCCGATCGCGTGAACGGTGCCCA 133989 37 100.0 35 ..................................... ATCTGCCCTTGCGGTTCTCAATGTCGAACCCGCAC 133917 37 100.0 35 ..................................... GACTCGCGCAGGACCTGCGTCAGCGAGCCGATGAA 133845 37 100.0 35 ..................................... AGCTCATGAGCCAGGCGCCCAGGCCCAGCCACATC 133773 37 100.0 35 ..................................... AGCCTGGGCGACGCAGGTGACAGCCCCGTCCGCGT 133701 37 100.0 36 ..................................... TTCGTGGCCAGGGTCTTCTCGACCAGGCGCACGATC 133628 37 100.0 34 ..................................... GTCCGGATGCCGTATCGGAGCCCGCCGCCGTCAA 133557 37 100.0 36 ..................................... CTCGGCCGCGATGCGCAGCGCCTCCGGCACTTCCGC 133484 37 100.0 34 ..................................... TCGCCATCGAGCAAGCTGCCTCCCGGGGTCTGCT 133413 37 100.0 35 ..................................... AACTTCGGCGGCCAGCAGCAGACCACCGGCAGCGC 133341 37 100.0 34 ..................................... ATCCACCCCATCAGCACAGAGATAGCCACTACCG 133270 37 100.0 35 ..................................... TGTGCTGCCGTCAGCACGGCATTTGCGAGTCCCAT 133198 37 100.0 35 ..................................... GTCCGGATGCCGAATCTGAGCCCGCCGCCGTCGAC 133126 37 100.0 35 ..................................... GAGAGGCTGTTGTATGCCTCCTGAGGTCCGGACAG 133054 37 100.0 35 ..................................... GTCATCGGCCGGGAATGGCTACAGCCCCGACAGCG 132982 37 100.0 36 ..................................... GCTTCGGCGATCGAGCGCGTGAAGTCATCCGGCACG 132909 37 100.0 36 ..................................... ACGAGCGGCAGCCCGAAGGCGATCAGCGAGTAGACG 132836 37 100.0 35 ..................................... GATCAGCTGATGTGGGCTGGTCCGTCGACCCGGAG 132764 37 100.0 35 ..................................... ACTGCCATTGCCTGATCTCCTAAGATGGCGTTGGT 132692 37 100.0 37 ..................................... CAGCGGCATCGGCGCGATGTACGACAGCGCCAACAGC 132618 37 100.0 35 ..................................... ATCGCGTCGGGGTAGCGGCGGCGGATCAGGTCGGC 132546 37 100.0 37 ..................................... CGCGCGGCTCATTAGGAGCTGGCGCGGCAGGCTGAGG 132472 37 100.0 34 ..................................... GAGCCATCACCGTCAACGGCACCGCCGCGGGGAC 132401 37 100.0 36 ..................................... ACCGCCCTGGCCGGTGTTGCAGGGGGGCCGAAAAGC 132328 37 100.0 33 ..................................... ATGGCGAAGGCATCAATGGTCCCTGAGGCCGGG 132258 37 100.0 34 ..................................... GTCTACCTCGCCGACCACCGCACCCAGACCGTGA 132187 37 100.0 35 ..................................... GCCCGCCCAGAGACTCATTGAATCAGTGCTGACCG 132115 37 100.0 37 ..................................... ATCGCCGCGCATGAGTGCCCGGTTGGGTCCGGCGAAC 132041 37 100.0 35 ..................................... GGTGAGCTCGCCGCCCGACGCCACCTGCAGCAGCA 131969 37 100.0 35 ..................................... TGATGACCAGGTGCGTGAAATCAGACGATCTGACC 131897 37 100.0 36 ..................................... GAAACGTCGAACTGCAGCCCGGTCTTGACGTTGTAC 131824 37 100.0 35 ..................................... TGACCGCCCATCACGTTGCCGAGCATGGTCGCCAA 131752 37 100.0 34 ..................................... GCCTGCCAGATCTCGCGCAGCCGCGGCAGTACCT 131681 37 100.0 33 ..................................... GGTGAGCGACGTGCCGATGCGCAACGAAATTGC 131611 37 100.0 38 ..................................... GCGTTCGGGCACTCGGTGAAATACTGGCGCGCCTCCTC 131536 37 100.0 35 ..................................... ATCTCGGCTTGCACGCTCACGCCGATCGTCCGGCC 131464 37 100.0 34 ..................................... TGCAGGCGCTCGGCCTCGAGCGAGTCGCGCAGCG 131393 37 100.0 35 ..................................... CGCGCCGATGCCGTGGGCGCGCTCTTGCCATGCCT 131321 37 100.0 36 ..................................... AGACGTGGCAGACCGTGGTCGGCGTGTGGGCCGAGG 131248 37 100.0 35 ..................................... GCCTGATCTGCGGCGAAAAAGGAGGGGCCGAGTGG 131176 37 100.0 35 ..................................... GGTGACGGCGTGCACCGAGAAAGCCGCGGCCATGC 131104 37 100.0 34 ..................................... ATCGATCTCGAGGGCTACATCAATGGCCTGCTGG 131033 37 100.0 34 ..................................... CAGGGACACGGCCGGGTCGTGCAAATGCTGGGTG 130962 37 100.0 35 ..................................... ACGTAGGCGGCCGACGCCGTCGCCTGAGCTGCTGC 130890 37 100.0 34 ..................................... CAGCGCCAGGTGCAGGTGTCCGTGGTGCTGTCAG 130819 37 100.0 35 ..................................... CAGGCCGCCTCGTCGTGCAGCGTGCCGCAGCCCTC 130747 37 100.0 35 ..................................... GTGGACTGCCACGTGCACCCGGTCAGCGGGCTGAG 130675 37 100.0 35 ..................................... ATTGAGGGAACCCGCGCCGCCGAGCGCTACCACCG 130603 37 100.0 34 ..................................... TCGACCCCGTACCGCAAGGCCGAGAACGTCACCC 130532 37 100.0 35 ..................................... CCCCGCTGAGCCGCGGCGTGGCCACGCTCTGGACC 130460 37 100.0 35 ..................................... TTCGCGGTGTTGCTGTGGCGGGGCTGCCTGCTGTG 130388 37 100.0 34 ..................................... AACATGACCGCTACCACCAACACCATCACCCTCA 130317 37 100.0 35 ..................................... AACGCCGGCGGCGCGATCGCGCGCAGCCTGATCGT 130245 37 100.0 36 ..................................... GTGGCCCTCGTCGGCGAGAGCGGTGCCGGCAAGACC 130172 37 100.0 35 ..................................... ACCACCACCAGCACAGGAGCAGAAATGTCCAACGC 130100 37 100.0 33 ..................................... CTGACGGTGCAGGCCAGCCACGACGCCGCCGGC 130030 37 100.0 35 ..................................... ACGCTGATCAGCCTGGTCCGAACCTACGCGCTCCG 129958 37 100.0 37 ..................................... GTGCACGCTGGCGGCAGTCGCGAATCCTTCGGCCAGC 129884 37 100.0 35 ..................................... GTGATCCCCCGCCCGGCCCAGATGCAGACCGTGAT 129812 37 100.0 34 ..................................... GTCGGGCTCCAGACGGTCCAGGTGACGCTGCAGT 129741 37 100.0 37 ..................................... CGCGGCTCGGCCGCCACCGGCACGCTGAAGGACGCAC 129667 37 100.0 35 ..................................... CCCCATCGTGCAGCGCCAGCCGGCCGTCTACGCTC 129595 37 100.0 35 ..................................... GCGAGCATGCAGCCGGCCGCCTGATCACCAACCAG 129523 37 100.0 36 ..................................... AGCTCCTGCAGGATCTGGCCGCACTGCGTCACATCG 129450 37 100.0 36 ..................................... GCAGCTTCCGGCTTGTTGCTGACGCTGGAGTAATCG 129377 37 100.0 34 ..................................... GGTCACACCCTCCCAGCCGACGATCCAGCGCATG 129306 37 100.0 35 ..................................... GCCAGCATGCAGCCGGCCGCCTGATCACCAACCAG 129234 37 100.0 35 ..................................... GCGATCCACTCGCAGCCGCCCTCGCTCTCCCATTC 129162 37 100.0 35 ..................................... CTGGCATGGCCGACGCCGGCGCCATCGTCCGCGTC 129090 37 100.0 35 ..................................... GCTGCCGGGGCGTCATGCATCTGGATCCGCACCTT 129018 37 100.0 34 ..................................... TTCGACGTCTTCCGGGTGCCGACGCGGCGCACGG 128947 37 100.0 35 ..................................... CTGCAGCAGCTGCGCGACCAGATCGCGACGCAGGG 128875 37 100.0 34 ..................................... GGCTTGGGTCATTTTTACTGAAGGACAAAAACTG 128804 37 100.0 34 ..................................... TGACCAGACCATGGCAAAGCGCAACCTTCCGCAG 128733 37 100.0 36 ..................................... CTGCTACTCCCTGCCTGTGACGAGTGCAATCGGGCG 128660 37 100.0 35 ..................................... AGCAGGTCGGCGATGACCGAGCGCGCGAAGTCCTT 128588 37 100.0 34 ..................................... TTCCAGCGCGCAGCAGCACGCCAATATGCAGCCG 128517 37 100.0 35 ..................................... GCCACCGGAGAATGAGCATGACCGACACCATCCCC 128445 37 100.0 38 ..................................... AGCCCCGTGAACGATCTGCTCGGGCATGGTCAGAACCC 128370 37 100.0 35 ..................................... CCGCTGGCGGCCACTTTGGCGGGGATGATCCGGTC 128298 37 100.0 35 ..................................... TGTCCGCCGAACTCCTGCAGCCCCATGAACCGGTC 128226 37 100.0 34 ..................................... GCCCGTGATGTGGTCGATCGGAACTCGGACCTCC 128155 37 100.0 35 ..................................... GACGGTCTTGAAGTAGCCGAGGTAGTGTCGCGTGC 128083 37 100.0 35 ..................................... AGCGCGGCCAGGTAGGTCGTGCCGGGGTTGGCCGC 128011 37 100.0 33 ..................................... TGCGCAGCGGTGGCGCTGCGGTTGTTGCGCAGC 127941 37 100.0 35 ..................................... GACGATGTCGCGGATGGGTGCCTGAGGGTCGAGCA 127869 37 100.0 36 ..................................... TCCGGGTCCGCGTTGCGGCCCGATGCCGATGGTGTC 127796 37 91.9 175 ........................T...AA....... ACGTTGATGACCTCGCCGGCATCGATGCGGCGGCGGTCGCCCGCTCTTCACTGGTTGAATTTTGTTTTTGAATGCAACAATTAAATTTGAGTCAGGTCCTCTTCATGTTGTTGTATTAAGGTGGGAGCATGGATTGAGGCGACGCCAGTGCTTACGGGCTTGTCGGCCGAGAAGG 127584 37 86.5 34 A....TT..C...............A........... ACGCTGCCCATCTACGGCGCTAGTTCGGTGACCT 127513 37 91.9 175 ........................T...AA....... ACGTTGATGACCTCGCCAGCATCGATGCGGCGGCGGTCGCCCGCTCTTTACTGGTTGAATTTTGTTTTTGAGTGCAACAATTAAATTTGAGTCAGGTCCTCTTCATGTTGTTGTATTAAGGTGGGCGCATGGATTGAGGCGACGCCAGTGCTTACGGGCTTGTCGGCCGAGAAGG 127301 37 83.8 36 A.....T..C..............A.C..A....... AGGTACTCGGACTCAATCTGGCAGATGCCTTTTACG 127228 37 83.8 35 ....G.T...........A....A....AA....... TGCCATTTCTAAGGACATTTCGGGTGATCTAACGT 127156 37 81.1 31 .....T.AT.....G....A....T....A....... ACCGTGGCGCGAATCAAGGGGGAGACTGATT 127088 37 73.0 35 ..T.T.......AG.GC.A.G.......AA....... AGGTTGCAAGTATTGTGTTGCGACACAATTTTTAT 127016 37 75.7 0 ....T.TTT....T.....A...A....AA....... | ========== ====== ====== ====== ===================================== =============================================================================================================================================================================== ================== 96 37 98.6 38 GTCGCCCGCTCTGAAATGGGTGGGCGTGGGTTGAAAC # Left flank : TGCTCGTGATCGTCTGCTATGACGTCAACACTGAGACGGCAGCCGGTCGCAGACGCCTGCGCCGGGTTGCCCGCGTCTGCGAGAGCACGGGCCAACGGGTGCAGAAATCAGTCTTCGAGTGTCAGGTCACTCTTGCGCAGATGGAGGATCTGGAGCGACGCCTGCTCGCCGAAGTCGATCTCGGGCTCGACTGCCTGCGCCTGTACCGCATGGCCAGCACCCGCGGCTGCGAGGTCCGCCAGCACGGCAAGTTCCGCTCGACTGATTTCGAGGATCCTCTGGTGATTTGACATGCCGGCCATGCCGGCCGGTATGATGGCCAGCGCGAACCTCAAGTGACCGTTACATCCTCGGTGGGTTCGCGCTCCACGCAAGTCCTTGTCCCATGAAGACTTTTTCCAGCACTTTGCGCCGATCGACCCTTGCCTGTCTCTCCAGACGACCCGGTTCGCGCGATGAGCGGATTTTTCGTCGTGCTGGCAATGATTTGGCACCGTGGA # Right flank : CCGTGAGGATTGGTGGCATGACGCGCTGTTCGCATCCCCAGTTATAAATTGGGTGTGGATTGAAACCATGCCGAGGTTGAGCTCTGCGAGGATGGTGGCGCGTCGCTTGCCCCGAAATGGGAGGGATTGAAGCAGCCAGGAACAGAGGATCTGCGGAGCGCATAGAGCAGTCATCCTCTCTGGAGTTCGCGGGGTGGATGGGCGGCGTGCAGAGTTCACGATACCCGTGCTGTGCAGACGGCCTGATGGCCGCCGAATGCGCCGCGCTCGGCGGCAAGGTGCTGGTGGCGCCGACGACATCGCCGGCGTGGGCCGCTTCGCGGTGCTGCAGGACCCGCAGGGGGCGTTCTTCAACATCATCGACTACCTCGATACCTGACACGGCACCCGACCGAGACATGAGGCACACGCACGGGAACTTGCACGTTCTTGCATTTGCATGCGGGCGATAAGATCAGGAGTTTCCCGATCCGGGTGCCACTCCTGTCGAGCCCAACATG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCGCTCTGAAATGGGTGGGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [49-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 198452-195844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSNM010000007.1 Leptothrix sp. C29 Ga0416762_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 198451 28 100.0 32 ............................ CACGAGGCCGGCGAAGAGCTGCAGCTCGACGA 198391 28 100.0 32 ............................ TCGAAGGTCAGGGGCGCGACGACGAGCAGCCC 198331 28 100.0 32 ............................ GGGCCGGCAGGCCCCTGCGGACCAGCCGGGCC 198271 28 100.0 32 ............................ CCGGCGCCGTGCCGCCGCGCGTCTACCGCCAC 198211 28 100.0 32 ............................ AGGTCCTGGCCACCCTCATGGACCAAGGACAC 198151 28 100.0 32 ............................ TGCGCGAGCGGCTGGGCAACGCGGCGCCCGAC 198091 28 100.0 32 ............................ GATAGAATCGCACGGCGCGGGGATGACCCGCA 198031 28 100.0 32 ............................ AGATCGGGCACGAGTCCGGGCGGCTGCGCTAC 197971 28 100.0 32 ............................ TGCGTGTGAACTCGCGCGCGTCGGTCTTCGAT 197911 28 100.0 32 ............................ CTGCCGGAGATCCCTCTCGTGACGATCAAGCC 197851 28 100.0 32 ............................ CGGCGCGCTGCCGCGCTTCGATGATCTTGGTC 197791 28 100.0 32 ............................ AGCGCGTTGATCGTCGTCCCGGCCAGATCGCT 197731 28 100.0 32 ............................ ATGTCGGTGTCGAACAACAGCACGCCGATGGT 197671 28 100.0 32 ............................ ATGCCCCATGCGCCACATCGTCCCGACGCTCG 197611 28 100.0 32 ............................ TACGCCGAGCGCGACCGGCCGACCGCGGTGCT 197551 28 100.0 32 ............................ AGATCGGCGCACCCGGCGTGCTGCCCATGATC 197491 28 100.0 32 ............................ TGATGCGCCTGCTGGTGTCGATCGACCAGCTA 197431 28 100.0 32 ............................ ACGAGGCCGCCGCCGGCGATGGTCCAGAGTGC 197371 28 100.0 32 ............................ TCCCGCCCTTCCACCAATGCCGCGCCCTCGGA 197311 28 100.0 32 ............................ ACATCGGCAGCCTGGGCGGCCAGGGCCTCGAC 197251 28 100.0 32 ............................ TACCGGCGAGCATTGACCACCCCGCCAGCAAT 197191 28 100.0 32 ............................ GAGATCAGCGGGCCAGCTTCGGAGACGACGGA 197131 28 100.0 32 ............................ TGTAGGCGCGGCGGGTACGTTGATATTTGACA 197071 28 100.0 32 ............................ TCGCGCACTGCGGCGTCAACACCCGCGGCATG 197011 28 96.4 32 .....A...................... TGCGGGCCGACAGCACCAGCAGCGCCGGCAGG 196951 28 100.0 32 ............................ GGACGGTCTCGAGGTAGCCCGGCGCGGCATTT 196891 28 100.0 32 ............................ AGTCAATCGGAGCCGCAGTCGCGCGCAATCCA 196831 28 100.0 32 ............................ GGGATGCGGCCGGCGTTCCACAGCTTGATCGT 196771 28 100.0 32 ............................ TGGGAGGCAAAGAGGAAGCTACTCGTCTGCCC 196711 28 100.0 32 ............................ GACTCGAAGCGCGTCAAGCTGACCCGCACCGA 196651 28 100.0 32 ............................ TGCACCTGCGCCAGCTCGCCGAGCCGCAGCCG 196591 28 100.0 32 ............................ GAGATCAGCGGGCCGGCTTCGGAGACGACGGA 196531 28 100.0 32 ............................ ATGACGCTGCCCATGGAGCGCTCCTTGCCGTC 196471 28 100.0 32 ............................ TTCGAGATCGGCCGACCCATCGAGCTTGTCCG 196411 28 100.0 32 ............................ TGCTGGGCAATCACGGTGCCGTCGGCGTACTC 196351 28 100.0 32 ............................ AACCAGCGCCGAGGGGTCGCCGAATACTGCGA 196291 28 100.0 32 ............................ ACGGTGGCACGCTAACAAGATAGATATTTGTT 196231 28 100.0 32 ............................ TGTCCGTGGTCCATGTTGACCTCCATGTCCAG 196171 28 100.0 32 ............................ ATCGGTGATGCACGCGCCGATGTACATGGTCG 196111 28 100.0 32 ............................ ATAGGTGCCGCTCGTCAGCAAACCCCTTTCCC 196051 28 100.0 32 ............................ ACGAACGCGTCCGTGGTGCCGCTCAGGGAAAC 195991 28 100.0 32 ............................ TCACATGCTGACCGGCTCGGGCATCGCGCGGT 195931 28 100.0 32 ............................ TCCGGTGGCGCCGGTCGATCATGGCCAGCACC 195871 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.9 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCCATGCTGATGGGCACGGCCTGGCTGCGCGGCATGCGCGATCACCTGGCGATCGGCGAGATCAGCGCGGTGCCGGCGCAGGCTCGGCATTGCTGCGTGTCGCGGCGGCAGTCCCACAGCAGCCCTGAGCGGATGCGCCGTCGCCTGATGCGTCGCCAGCAGATCGACGAGGCCACGGCCCGCGAGCGCATTCCCGACCAGGCCGCCACCTTCCTGAGGCTGCCGAGCCTGCAGGTGCGCAGCAGCAGCACCGGCCAGCATTTCCGGCTGTTCATCCGGCACGGACCGCTCCAGAACGACCCGGTGCCCGGCGTCTTCAACGCCTACGGCCTCAGCGCCACCGCCACCGTGCCCTGGTTCTGACGACGACCCTTTTTCGGGGCGGCAGCCTCTGCTCCTTAAAAATCAAGCACTTAGCGCAGGATCCCGCAAGAGGGTCTCGCGCCAGAGTCTGGCAGAATGCTCAAGCGCGACAAGCACTTGCGCGTTTGCCAGCTCTT # Right flank : TTGAACAGCAGCACCAGCCTCTGAAAGTCGGCGACGAATCGTCGGTCAGGGAAGGGTGGCGAGTGGGGAGAGGCGGTGAAGGTCGGGTGGGTCCTCGCCTTCGCGAGGATGACGGGGGTGGGGGGCGTCATGCCCACAACGGCGCGCCGCCACGAGGGCGCCCGGGCGGCATAGACTGTCCGGCATGTCGTCTGATTCCGGGATCCTGTCGCGAAGGCTGCTGCCTCGGCTGTGGGCGCTGCCTTGCACCCTCGTCGGCCTGGTCGCCGCGGCGCCGGTGCTGCTGGCCGGGGGCAGCGCGCGGCGCGTCGAGGGCGTGCTGGAGGTCGGGCTGCGGCCGCTCCAGGCGGGGCTGCCGCGGCGGGTGAGGGCGCTGCCGTTCGGCGCGATCACGCTCGGCCACGTCATCCTCGGCCAGAGCCACGAGCTGCTGGCGCGGCTGCGCCCGCACGAGCAGGTGCATGTGCGCCAGTACGAGCAGCTCGGCGCGCTGTTCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //