Array 1 160666-162976 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVX01000010.1 Dickeya sp. ws52 WS52_Scf_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160666 28 100.0 32 ............................ GCCCAGAAGAGTTACAGATGATAGTATTGCAC 160726 28 100.0 32 ............................ AAGCGCAGCAGCGATACGAGCGGCGGTCAGTT 160786 28 100.0 32 ............................ TGAAATGGCTTTTTAAAACAGGAGCGGCGAAT 160846 28 100.0 32 ............................ TGTAGGGCATCCAGGCCCACACCGTAATCGTG 160906 28 100.0 32 ............................ ATCAATACGGGGCAGAATCGATGTTTTCAGGA 160966 28 100.0 32 ............................ GGAAGATGGGATTACTGGCATATACAGTTACT 161026 28 100.0 32 ............................ CCCTCCCGCGTGAAATAATTTCAAATGAAATA 161086 28 100.0 32 ............................ TGGCGGCGCGCGCTTTCGTCTATGGCTCCACA 161146 28 100.0 32 ............................ TATCGGTCGGTGCTATGTGATTGTGTAAAATA 161206 28 100.0 32 ............................ GTGCGGCGCGGGAATAGCGTTCGACGTAGAGC 161266 28 100.0 32 ............................ TGAGGCTGAGCGGCCTGTTAACGGATTCGGAC 161326 28 100.0 32 ............................ GTGCTCACGTTCCCATGCGCCAGCGTCTCTGT 161386 28 100.0 32 ............................ AGCGTAACTATCGGAGAGGTGAATATAGCGCA 161446 28 100.0 32 ............................ TCTTCACCGGGCTGAAGCCCATCAAACACCAT 161506 28 100.0 32 ............................ TCCAGCACGGCTTTTTCTGCATCCATGTATGA 161566 28 100.0 32 ............................ AAAAATGCGTATCGATCCAGCCTGAAATGCCG 161626 28 100.0 32 ............................ AGTTGACGAAAAGGGACGTCTCAACGATAAAA 161686 28 100.0 32 ............................ GGAGAAGATCAACCCAGCATACGCTACCTGGT 161746 28 100.0 32 ............................ TGAATCGCAAACCCCGCAGCCCGGTGATACCG 161806 28 100.0 32 ............................ GTCACTGGCCTTGTATATTTCTGGCAATCCTT 161866 28 100.0 32 ............................ ATAAAGTGATTCAGCAGACGCTGGACCGCGTT 161926 28 100.0 33 ............................ CACAACCAAATTTTGACGCAATTTAAAATGGCA 161987 28 100.0 32 ............................ GGAAAACACCCACACAATCCCGATTGACCATG 162047 28 100.0 32 ............................ AGTACGCTGTTTGAAGAAGTAGCGAGCGTAAT 162107 28 100.0 32 ............................ TTCACAGCATCAGCTAGGCGCTGCTGTGACAT 162167 28 100.0 32 ............................ TATCCGCCCTTTTTCACACCACAGCGCACTCT 162227 28 100.0 32 ............................ GTTGAGGTTGCGACAATGAAACCCGAGCACGA 162287 28 100.0 32 ............................ TGACGTCACTGGTGACAACCGGGTCTGCAAAT 162347 28 100.0 32 ............................ AACAAGGTAACCCTTTCTTGTTAGCTCCACGT 162407 28 100.0 32 ............................ AAAGGTGAGGCGTTGGCGTTCGAACGTTTCAC 162467 28 100.0 32 ............................ ATTACTCAACTGCTGGATAAACGCACCGGGAA 162527 28 100.0 32 ............................ TGAGCCGGAGTATTCCGAGGGAAAGCCTTAAT 162587 28 100.0 32 ............................ GTCAATGCATCTGATTCAACGTTTAACGTCGG 162647 28 100.0 32 ............................ AGCTCGGGGAATTTGTGGACGACTTTTTCACG 162707 28 100.0 32 ............................ TAGCGACGCTACGGTAAAAGGCTCTCGGGTTT 162767 28 100.0 32 ............................ TCACGCCCGAATGGGTAGCACTCACACAACCA 162827 28 100.0 33 ............................ CGGCGTATGGCTGGGTGGCTTCACTGTCAACCA 162888 28 100.0 32 ............................ TGGTAGTAGATGGACAGATTGCTAAACGGTGT 162948 27 82.1 0 ...........C.C.........-..CG | GG [162969] ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.5 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCCGCACGCAGCGAGGTATACGGCTTGTAATCGCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTGCACGCCTGTCTGGCAAAAGCGCCACTGTAGCACGCTGTTTCCGCCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGGTTTAACAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGTTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCAACACCGTTTATCCCGCACGAAATGAACCACCGCCCCCGCATACATTCGCTAGCCAATAACGAGGCACCCCGGCTGTTTACCAACAGCCCAAAAACGCTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCACCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGGATGTTGGTGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 169679-168028 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVX01000010.1 Dickeya sp. ws52 WS52_Scf_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 169678 28 100.0 32 ............................ AAGAACATGCCGCTGAGTGAGTTCGCGCCATT 169618 28 100.0 32 ............................ TCAATAGTTAAACTCAAGTTCTTCACCTGAAT 169558 28 100.0 32 ............................ ATCGCCGGACGCGGCAAACGGCACCCGGAGAA 169498 28 100.0 32 ............................ AGATGGCGCAACCGTAGCGATAGACACGCACA 169438 28 100.0 32 ............................ ACTGTTAACGGCGGTTTCAAACGACGTTAGCG 169378 28 100.0 32 ............................ TCCGCGTGTTTGTAATCGATGAAATCCATATG 169318 28 100.0 32 ............................ AAGTACCCGGCCAAAGCCAAAGAAGTCCGCAC 169258 28 100.0 32 ............................ AGAACGTGGCTGTAACCCGCCGCGCAGCTCTC 169198 28 100.0 32 ............................ ATGCAAATTGCGGCGTCAGGTCATAATAATTT 169138 28 100.0 32 ............................ AATCGATAGACGACGCAATGACGTTATAGACC 169078 28 100.0 32 ............................ CTGCTGACGCAGTGCGGCGTCCCCTCGCAGGC 169018 28 100.0 33 ............................ TGGATGCTCGCGGACCGTGGAAAACGGGGATAA 168957 28 100.0 32 ............................ TCCTGCTTCTGCTTGAGCTGCTGATACTCGCA 168897 28 100.0 32 ............................ TTATGCCGGGCAAGTCCTGGAGCGATCCCCAG 168837 28 100.0 32 ............................ AGAGTTGGTGAGCCTACCCACGTGCCGGTCTT 168777 28 100.0 32 ............................ GAGGGAAAGCCTTAATTTCAGAATACAAATTC 168717 28 100.0 32 ............................ GCGACGCGGGAACGTTAAACCCTAAATCCAAA 168657 28 100.0 32 ............................ GATTGAACGTCTGTCATTGCTATCTTCAGTAT 168597 28 100.0 32 ............................ TCTAGGGAAAATACAGTGCGTAAGCATTCCAT 168537 28 100.0 32 ............................ CAGGTGCTGTTTAACCGTTTGCAGATACGCAT 168477 28 100.0 32 ............................ CGGCTCACTGGCTGGGTCTCGTGTGGATATGT 168417 28 100.0 32 ............................ GGTTAGCGGAGTGAGGCTCGACGACTGCCCGA 168357 28 100.0 32 ............................ ACAGAACATACCGAAATGCCGGTCAAAATGTG 168297 28 100.0 32 ............................ AGGGTAAATGCTGGTCTAACTCAAACGGAAGC 168237 28 100.0 32 ............................ TGGCCGGAAGGGCTAAATGAAGCCGTCACGGC 168177 28 100.0 32 ............................ ATTGTTTGTGGGTGTTCGTGGCCGGTATCCGC 168117 28 92.9 32 ...........GA............... ACCATCGCAATCTTCTGCCAGTCGGACGGCGT 168057 28 75.0 0 ...........TAC.........G.CGG | GG [168032] ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.9 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCGCTGGCGGCGCTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGCACTGCCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAGCGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGAGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCATATCTGCCGCTGCGCAGCCTTTCCAGCGGACAACCGTTTTTACTGTTTGTCGAACACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACATTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGGAAAACGGCGATTTATCTTTAACAATCAGGTAATAAGAGATTATTCGCTACA # Right flank : GTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCCAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGAGGCGCGATTGTCTATCCCGCACGAAACCACCCACCGCCCCAGCATAAATCAGGCCGCAATCCCCCGGCTGTTACCAGCCCCCATCCCCGGCGGGCATGGCCGTTTCCTGCAAGGAAAAAAATCCCCCGGCCGTTGCTGGCTGGGGGTAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAAGCGGCGGCGACGCGCTGTACGTTGTGGTGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATAAGATACACGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 178275-180105 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVX01000010.1 Dickeya sp. ws52 WS52_Scf_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178275 28 96.4 32 A........................... AGCCACTGCGCCGCATCGGCGTAACCACCCGG 178335 28 96.4 33 A........................... CTTGGCCGGCTGAAAATATTCGCAACAATGCGG 178396 28 96.4 32 A........................... CGACGCTGCAATGCCATCGACATGAACGGTAA 178456 28 96.4 32 A........................... CACATCGGCGGATTATCCCAGTTGATTTTGTC 178516 28 96.4 32 A........................... ACAGAATATGCGTAATATGATTAAACCGCCGC 178576 28 96.4 32 A........................... TGCTCAGGTGTGCTCATGTGCCTCGCAAACTC 178636 28 96.4 32 A........................... TCAGTGTCGGCGGCTCCCTCGACCTGCGCGGC 178696 28 96.4 33 A........................... CGTCACCGGTTTCTTGATATTTCAATGCCTCTA 178757 28 100.0 32 ............................ TGGATGAGCGCCGCACTACCCCCAGCGCCAAT 178817 28 100.0 32 ............................ ACGCTGCACCGGTCATCACATCCGCAACCAAC 178877 28 100.0 32 ............................ GAGAGGTTGAAGTGTTGCGCGCCTCATCTACC 178937 28 100.0 32 ............................ AGAGTCACCCCAGTTTGCTCGGATGACCTACC 178997 28 100.0 32 ............................ TATTGAACGTATCGGACCGGTTCGCCAGATGC 179057 28 100.0 32 ............................ TTATTAGATAGTTGCCCCCATCATAGCTTGCA 179117 28 100.0 32 ............................ ACGCACGGAACCGGACTTCGTTTTTTCCTGTA 179177 28 100.0 32 ............................ ATTATCTGCCGGTGTCATCCATTTAGGATAAA 179237 28 100.0 32 ............................ TATCTTGCCACTCTTTCATCGCTATTTTTATG 179297 28 100.0 32 ............................ TGATGTAGCTCCTGATACAATGAGTCGTATTG 179357 28 100.0 32 ............................ GCATATTCTCCCGCGCATTCGCTATCGCCAGG 179417 28 100.0 32 ............................ AGCGCTCTACCGGTTTCTCCGTCGCCTCACGG 179477 28 100.0 32 ............................ AAATACCACCCCGGCGCGCGCAATCGTGGCCC 179537 28 100.0 32 ............................ TCCCAGTTCCACCCCGCCCAAAGCTCGCAATC 179597 28 100.0 32 ............................ TTTGCGGACAAAATTTATAAACGGGTAGCGTA 179657 28 100.0 32 ............................ GCTTCAGCCCAGGCCGTTGACGTTGAAGAGGA 179717 28 100.0 32 ............................ ATTGCGACCGGGTTGTGATTCATCGCTATGTG 179777 28 100.0 32 ............................ GGATTTGAAAGCCTGGCAGAGTGATGACCCGG 179837 28 96.4 32 ...........................G TGGCTGATAACAGGCCGGTAGACATTTACCTG 179897 28 96.4 32 ...........................G TCACTGATGCTGTTCAGACGCTCCACCCGCAC 179957 28 100.0 32 ............................ GATGGCAGTCGTGATCTGCGTGAGTTTCTGTT 180017 28 100.0 32 ............................ CCGAATTAATGAAACCCATTAATCGACTGCTG 180077 27 89.3 0 .......................-..CG | GG [180098] ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.5 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTGATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCCAAAATACTTTTCTTATTTTTATACCCTTTTTTCAGCCGCTATTTTCGATACTTAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGACAATTGCGAGCTGAAATACAACGGGTTAGAGTCAACAGGCTACG # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGTTGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCACGTCACAGGCGGTCCGAGCAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCAGCAAAGAAACCATGCAGTTAATCACGCACGAAACCCTCCACCACACCACCCTATACACTACGCCCTTAATTCAACAGCGCTTTCCCCGCTTCGGGGATATCCTGTCAGAACGACGTCCAGTCGCTATTGCCGATGGCGGCGGCCCGCCTTTCAGTCGCGGCCGGGCGAACCGGCAGCGCCGGGGATAGCACCGCTGACTGACGGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //