Array 1 8710-7705 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMS01000149.1 Escherichia coli strain JML021 sequence149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8709 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 8648 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 8587 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 8526 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 8465 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 8404 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 8343 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 8282 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 8221 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 8160 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 8099 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 8038 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 7977 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 7916 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 7855 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 7794 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 7733 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63633-62687 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMS01000371.1 Escherichia coli strain JML021 sequence371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63632 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 63571 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 63510 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 63449 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 63388 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 63327 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 63266 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 63205 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 63144 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 63082 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 63021 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 62960 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 62898 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 62837 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 62776 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //