Array 1 30598-29535 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000158.1 Streptomyces sp. CBMA29 CBMA29_240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 30597 29 100.0 34 ............................. CCGCGCCCGCCCGTCACCCACCACCGTGTCCGAC 30534 29 100.0 36 ............................. GTGCGCGCCCACTCCTCCGGGCTGATCTCCACCGTC 30469 29 100.0 36 ............................. GCGCCCGGACCGACGCGCTGACGATCCTCGACCAGG 30404 29 100.0 35 ............................. CCCTCGACATCGCCTGACCGGCCGAACCCCAGCCG 30340 29 100.0 35 ............................. CGCGGTGGGCACGGTCCTTACGCCGAGCCTTGCGC 30276 29 100.0 36 ............................. CAGTACGGTGCGCGCGAGTACGGCGCGCTGCTGGAG 30211 28 96.6 36 ....................-........ GTGATCTGCTGGCCTCCGATGCCGTGCAGGTTGCCG 30147 29 100.0 36 ............................. CGATGCCCGAGTGGGCCCGGCTGCACGACGACCGGT 30082 29 96.6 36 .............T............... TCGTAGCTGTCCAGGGACAGCACGACCGACATCGTC 30017 29 96.6 36 ............A................ GGCTGCCGGTGGCCGCGAAGATCGCGGGCCAGTACG 29952 29 100.0 36 ............................. CGGGCTTCGGCCAGGGCGAGCACGAGTGTGGCCGCC 29887 29 100.0 35 ............................. ACAGGACACGCCTGGACGGCATGCAGATGCTGCTG 29823 29 100.0 36 ............................. CCGATCCCGTGCACGTACGCGTAGCGGGCCGCCAGC 29758 29 100.0 36 ............................. ACGCTTTCCGCCCGCTCGACTGGGCTTGGTGCGCCG 29693 29 100.0 36 ............................. CCGTGGGCAGCGTGGGCGGCGTACCGCCCGCCAGCT 29628 29 100.0 36 ............................. GCATGCCACAGGGCCTGGGCGAGGACGTCGTCGGGG 29563 29 93.1 0 ......................GG..... | ========== ====== ====== ====== ============================= ==================================== ================== 17 29 99.0 36 GTCGTCATCAGCCCAGGAGGGCTCGCAAC # Left flank : GAGCCAGTTCGGGATCCTGGCTTCGCAACAGCCCGTACACGACGCCCCGCGCCGGACCGTGCACATCCTCCCACCGCAACGTCGGCGTATCGGCCTCGACATCCACTCTCAACCGCACAGCAACACACCTCGCACACCACAGCCGTCAGCATCGCCGCTCGGCTCAACTATCAAGAAACGCAGCGTAGTTGACCAACTCAGATGGGATGGTAATTTATTACGAAGTAACACCAAATCAACTCCATGGTGATATGAGACCTTTGGTTGGCGTTGCGGTCTCTCCGTCCCAGCCACCTGCACGCCACGCAAGGTAGCGCCAACCACCGACAGCGCCCCTCGGCGACTGCCAGATCGAAGAATGGATCCCTGCCAGACTGAACGAACCCGTGCGCGTCTTACAAAACGTCCTGACCTGCACTGATGCACTACCGTCGGGTCGCCGCACTTTCGCCTCACAAACCCGTCCAACGACCCCGCCTGACCACTACCTTTACCCTCGG # Right flank : TCGTGTATGTACGGCCACTTCGGCAAGTACCTTTTGCCTCAGCTGCCGAGAATGGTTTCTCGGGCGGCGCGCGCCCAGACGGCTTGCTGTCGGGCGGGGAAGCCCATTCGGTTCCAGTGGAAGATGACGTGGCGCGCGAGGATGCCGCGGACGCCGAGGTTGAGTTGGCCGTTCTCGGCGGCGTCTGCCAGGTCCCGTCCGCTGCGTTCGAGGCCCGCGATCCAGGGGCTTATGAAGGCGAGGGCGCCGGAGTTCAGGAGGGGGTGGGCGTCGGTGAGGAGGAGGCGGCGCATCGGGGTGACCATGGTGCTGATTTGGTCCGGGGTGACGTCTTGGGGGAGTGGGCGGCGTTCTTCCACGCGCGCCCATACGTCCCCCTGCTCGCCGTATTCGAGGCGGGCCGCACGCATCAGCAGCGTCATGCCGAGAAGGGAAGCCACCTTGGCGTCCGGCAATGTCTTGCTGCTGTCGGATGCGGCGTGGAGGTAGTCGAGGACGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 39125-39868 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000158.1 Streptomyces sp. CBMA29 CBMA29_240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 39125 29 100.0 38 ............................. ACGGCGGCATCCGCGGTCCGCCGCCAGACGCGGCGCAC 39192 29 100.0 36 ............................. CCCACCAGATCGCCGAGTACCACGACGTGCAGCTGA 39257 29 100.0 36 ............................. GCAGTCCGCCGTCCGCGCCCTGCGACATCGAACGCC 39322 29 100.0 36 ............................. GCGATCCACGCGGCACATACGGCGGCGACCTGGACC 39387 29 100.0 35 ............................. TGGCACACCACCTTGGGCCAGCGTCCGCTGGTCGA 39451 29 100.0 36 ............................. ACGTTCTCTTCTGGCATGACGAATAGAAGAACTCGC 39516 29 100.0 36 ............................. TAGGCGGGGCGTGGCGGAATGGCCAGGAAGTCGGCC 39581 29 100.0 36 ............................. GAGACAGGGCCGCCGGTGTGGACGTGGTGGGCGAAG 39646 29 100.0 37 ............................. CGCCGGATGACCTCTTCGTAGCTGCGCAAGCTCCCAC 39712 29 100.0 35 ............................. TGGCTCCAGTACCTCGGCCAGGCCCCCGGCCGCCA 39776 28 96.6 36 .......................-..... GCGTTCTTGGTGACCGAAACGTGCTCCCGCTCCCAT 39840 28 75.9 0 .....G.A.......A...C.-C...C.. | C [39851] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 97.7 36 CTCGTCATCAGCCCAGGAGGGTTCGCAAC # Left flank : GGAGGAACTCTCCACCACCGTGTTCCATCGCACCCTCAAACGCCAGGTCAGCTACGAAGAGCTCATCCACCTCGAAGCCCTCAAACTCGTCCGAATGTGCCTGGAAGAGAAGCCTTACAAGCCGTTCCGGCCCTGGTGGTGACCGGAAATCTTCGTCATCCTCGTCTACGACACCGCCGCCGAGCGCAATCCGAAGGTTCTCAAAACCTGCCGTAAATACCTCCACTGGACCCAACGCAGCGTCTTCCAGGGCGAACTCACCGCCGCCCAATACCGGGCCCTCATGGCTGCTCTTGCCACGACCATCGACGTGGACTACGACAGCATCGTCACCTACAAGGTCCGCTCCCCGGACATGATCGAATCAACAACCGTCGGAGTCGCCCTCGGTGGCCCAGGCGACATCCTCTGACCAGGCACGATGCACTACCGACGAACTCCGGGGAAACATTCACGTCCACAGGACGCCGCATGGCTCTGACCTGTGCCTTTACCCTCGC # Right flank : CTCGGCCGCTGGGGCCCTAAAGCGCGTGTGATCACTCGCTACAAAGAGATCAGCCCGACTCCTGCCGCACGGTGCGGTCCGCAACCGCCATGCGGCTCGACGCGGTCTCAAGACCGACCAGGACCGCGCCGTCTGTGATCTTGAACCAGCCGTCACGGTCGCTCATCCACCACGTGGACTGGTAGACGGCGAACTGTTTGATCGTTTCGCTGAGGTATCGGGCATCGCCTGCGGTCACGGCGGTGGTCATCTCGTCGTGGGTGATCTGCGCGGTGCTGCCCGGTGGGATACGGCCCGCTCGTGCGCGGACGTACTCGGGGCGTTCCGCGGAGGTGGAGTTGGTCATGGCTGCTCCCCTCCTACGGCCGGATGTCGGGCTTGGGGGCAGGGGCGGCTGGGCGTGGTGGAGGCTGGGTCGGAGACGGGGTGGGTTGGTCGATCCGGTGGTTGGCCGGGGTCGGGGAGGGCCCGGCTATCCGTTGTTCGCTTCTGCCGTGGGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCATCAGCCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 16986-17910 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000220.1 Streptomyces sp. CBMA29 CBMA29_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 16986 29 96.6 32 ....A........................ GTCCCTGAGATCGGCATCTCAGGTCGCCTTAC 17047 29 100.0 32 ............................. TCCAAGGCCCCCTTGAACCGCCACCTCGTGTA 17108 29 100.0 32 ............................. GATGTCGAAACGTCGGCGCAACTCGTGAATAA 17169 29 100.0 32 ............................. AGCACGGGCCCGAACACGGCTTCGTCGTCCAT 17230 29 100.0 32 ............................. TTGTCCATCATGTCCCGCGCCTCTTGGGACTG 17291 29 96.6 32 ..............G.............. GTCCTGCACGTCCTCGGCAAGGGCGACCGAGA 17352 29 100.0 32 ............................. TACCGGCCCGACACGTCCACCGCCGACTCCGC 17413 29 100.0 32 ............................. GTCCAGGCCGAATTCGACGTTGGTGGTCATCG 17474 29 100.0 91 ............................. TGCGCCATCTGCACACGGCGGCGGCCCAACGCCTGCTCCCCGCGCGCGGGGATGCCCCTGGGGGCTACGCGGCACTGTGCCCCGCGCATAG 17594 29 89.7 32 .G...........C..........C.... GCGTTGTGCGGCACGCCGCGCTCGCGCTCCAA G [17607] 17656 29 93.1 74 .............GA.............. CGCCTGCGGATGCTGCGGGAGACCGGCCTGCTCTGCTCCCCGCGCAAGCGGGCTCCTCGTGCGGCCGCCGCCGT 17759 29 89.7 32 ...........C.G..........C.... TGGACCGCGTACTCGTTGAAGGTGTCCAACAA 17820 29 86.2 32 .C...........GT.........G.... GGGGGCTATCTGGCGCTGTGCCCCGCGCATAG 17881 29 86.2 0 .G...........C............G.G | G [17894] ========== ====== ====== ====== ============================= =========================================================================================== ================== 14 29 95.6 40 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : ACCAGATCACGACGGGTGGCGGCGACGACCGCATTGACGCCGGCGGCGGCAACAACGTGGTGAACGCGGGCGACGGTGCGAATGTGGTCCTCACGGGCAGCGGCAACGACCGCATCACGACTGGTGGAGGCGCCGACACCATCGACGCGGGCGCTGGCAACAACGTCGTGAGCGCCGGCGACGGCCCCGACACCGTCCGCTCGGCGAGCGGCAACGACTCGATCGACTGCGGCCCCGGCCTCGACACCGCCCACCCGGGCCCCGGCAACAACACCAACGTCGGCGCCCGTTGCGAAACCTTCTCCGGCTGACCGCCTCGCGTCGCGTCGCGGCACGCGACGAGGTAAAGGGTGGACGGGACAACGGAGTGTGTCGTCCCGCCCACCCTTACTCTGTATGCGACCCGCCACGATGCCTTGGCGCTTTCGCCCCATTGGCCCGATCCTCGACAACTCCTAAAATCGCGGCCCTCCGGCCGGCATCCCCGCAGGTCAACTAGT # Right flank : GTCCGCTCAGGGCACGGCCCCGCCGAGGGTTATTCGAGGGCCGCCACGGCGGCGAGGATGGCGGCGGGTTCCGACCGCGTCGTGTAATCGGGGTGGACGTCGATCCAGCGGATCGCACCGTCGGCGTCGACGAGGACGGTCGTGGCGAGCGGGAGCGCAGCGGAACCGTCGGCGTTGACGTCGGTGAGGCGGACACCGACCGACGCCTGGGCGTCCTGCGCGCTCTCGGCGAGGGTGAAGACGATGCCGAGCTTGGCGGCGATCTGGTTGCCCGGGTCAGAGAGGACGGCGTACGAGAGGCCGAGCTTCTCGGTCATGCTCAGCGAACCGTCCGGCTTTTGCGGGCTGAGGGCGACGAACGCGACCCCCCGAGCGCGGAGTTGGTCGACCAGGGTCTCCTGGTACGTGCGCAGGGTCAGGTTGCAGTACGGGCACCAGGCGCCGCGGTAGAAGACGACGACGGCCGGGCGCCCGGCCCGTACAGCGGAAAGGCTCGTCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19522-20598 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000220.1 Streptomyces sp. CBMA29 CBMA29_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19522 29 100.0 32 ............................. TTCAGCATCAGATCCGGCCGTGTCCGGAAGCT 19583 29 100.0 32 ............................. GCGATTACGACCTCTCCGCCCGCGGCGGCGGT 19644 29 100.0 32 ............................. AACACCCCGCGCGGCGACGCAGGGCAGATGTC 19705 29 96.6 32 ..........G.................. GGCACCCAGCAGCCGCGCGAAGTCTTCTCCGG 19766 29 96.6 32 ..........G.................. ACCGGCGCGAACGTCTACGGGACCGTGCCCAC 19827 29 96.6 32 ............................T CCGGTCACGGCTGCGGAGTAGACGCGGGCGCC 19888 29 100.0 33 ............................. TCGAACGCCTCATGGGACAGCCCACCGTGACCA 19950 29 96.6 32 ........................T.... CCTACCGACAAATCCGGCTCGCCGCTCTGCTT 20011 29 96.6 32 ..............T.............. CAAGCCCGCATGGTGTTCGATGCTGCTAAGCA 20072 29 89.7 32 ............TAT.............. AGCCACGAGACGCCGACGCCGGAGAGCGCCGA 20133 29 79.3 32 GC..C.......AC..........G.... TGAGTCGCGCGGGCGGCGTCCCCGCACGCGCG 20194 29 96.6 32 ..............T.............. TCCATGAAGATGGGGCCAGCGGGGGCCACGTC TC,CGT [20206,20213] 20260 29 100.0 32 ............................. GCCCACGGGATGGCCGTGGTCCTATCGTCGTA 20321 29 93.1 31 .........C..................G AAACACTCGGGCACGGCACCTCGCCGCGCCC C [20326] 20382 29 89.7 32 .........A.A.C............... ATGCGGGCGCTGATGGCCTCGCCCGCCGTGGA A,T,CGT [20395,20398,20401] 20448 29 100.0 32 ............................. TCGATCGAGTCCGCCTCGGAGTCGACCTGTCC 20509 29 100.0 32 ............................. AGCCGCCGCGTGACCTGCACGCCGTGTGCTCC 20570 29 82.8 0 .C..........TAT..........A... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 95.2 32 CTGCTCCCCGCGCGAGCGGGGATGACCCC # Left flank : TCGCCGAGGCCGGGCGCCTCGACGGCCGGGGCGGCTGCCCCCTCGGGTCCCTCGGCGGTCAACTCGCCGAGAGCGACGCGCGGGCGCGGGCGCGGGTCTCGGTCGGGTTCGGCCGCTGGTCCACCGTCATCGGCCAAGGGCTGGCCGCCCTGCACGCCGCCGGGCGCCTCCGGCCCGGCATCGATCCTGACGACCTGGCCGTCACCCTCCTCTGCGCCTTGCAGGGCGCGCTTCTGCTCGCGCAGATCCAGCGGGACAGCCTTCCGCTGGAGACCGCACTCGACACCGTCCTGGCCCTGAGCCTCAGCCCAACCCCGGCTTGACGCCCGACGGTTCACTGCCCACCGCTTGAACGTCCCCCACCCCGCCATCCCCGCCTGGCCCTACCCTGGACGTGAGCCCTCCGGACCGCCCCCACAGACGGCTCGCCCGATATGCCCGATCCTCGCAAGTTGGTTCATCCGGCCCCTGTCCGCGCCCAAACCCGCACGTCAGCAAGA # Right flank : CTGGTGCTGGTTGACGTCCGCGTCGTAGACGCGCTGCTCCCCGCGTCCGTGCGGGCGCGGATGGCCTTGCCCGGTGCGGACTGGTCCCCGCGCGGGAGGGGTCAGGAGGTGGGGAGGTGGTGGGACTTGAGGGTGGTGAGGAAGGCGGTCCAGGCGGTGGGGGTGAAGGTGAGGGTGGGGCCGTGGGGGTCTTTGGAGTCGCGGACCGGGACGGCGTTGGGGCAGTTGGTGGCGACCTCTACGCAGTCGCCACCGTTGGAGCTGCTGTAACTGGACTTGTGCCACGTCAGGGCGGGCGAGCCGTATGAAGGCATCGATTCGGCTCCTTGCGGGAGGGGGTCAGGAGGTGGGGAGTTGGCCGGACTTGAGGGTGGTGAGGAAGGCGGTCCAGGCGGTGGGGGTGAAGGTGAGGGTGGGGCCGTGGGGGTCTTTGGAGTCGCGGACCGGGACGGTGCCGGGGCAGTTGTCGGCGACCTCTACGCAATCGCCCCCGTTGTCGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGAGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28290-29446 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000220.1 Streptomyces sp. CBMA29 CBMA29_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 28290 28 86.2 190 .....-.....CTT............... ACCCACACCACGAACCTCCGCGACGACCTCGACCTCGCCTTCGCCGCGAGCACGCTGGCTGGCCATGAGGGCCCTACGCTGTCCCCGTGCCGCCCCGGCCTTGGCGCAATCCGGTTCGCCCCATTCCCCCGATCCTCGCCAACGCGCCCACCCCGCCCTCTCCGGCCGGCAACCCCCCACGTCAGCAAGC 28508 29 96.6 32 ............T................ AGGGCGGGGCGGCCCTTGCCGATGTCGAGTGC 28569 29 93.1 32 ...........C.............T... TTCCGCCACGCGGTGGAGACGTCAGGTTGGGC 28630 29 100.0 31 ............................. CCGAGGGTCTGGAGCGGCACACGCTCGTACG 28690 28 89.7 32 .......T...-..T.............. TCGTCCATCGTGTCGCCCTCGATCCGAGCCGC 28750 29 89.7 32 ...........C..T.........G.... TACAGCGACCAGTGCGAGTTGCCCGCCGGACA 28811 29 89.7 32 ...........C.G...A........... ACCCGCCCGGCGTCTGTGCCCGTGCTCTGCCC 28872 29 93.1 32 .....T......T................ AGCGAGCCCCGCTCCAGCGGGTTGGTGATGCC 28933 29 86.2 32 ..........AC.T..........G.... GCCTCATCCACGTACACGTCCGTGATCAGGTG 28994 29 100.0 32 ............................. GTGCACGGGGCGATCATCGACGAGCTGCACGA 29055 27 89.7 32 ...........--...............T GGTGTGGTCGTCCACCACACCGTTACCCAGGG 29114 29 82.8 31 ...G.......A.TT.......C...... GCCTGCCCGCGTCGGCGTGGTCCTTGCGCTG 29174 29 93.1 32 ........T................A... GACGTGGAGACCGCCCTGGCCAAAGGCACCGA 29235 29 86.2 31 .....T.T...C.C............... CGGACGTGAACGGCTCCATCCGCATGAGCGG T [29260] 29296 29 93.1 32 .....G.....A................. AAAACGGCACCCGGCACCTACGGCGGTGACGC 29357 29 86.2 32 ...........C.T...........A..T GGGGTGGTCGTCCACCACACCGTTACCCAGGG 29418 29 75.9 0 ...GG...T..A..T...........T.A | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 17 29 90.1 42 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GCCGCGGCTTCTGCGGCTTCCGCGGCTTCCGCGGCTTCTGCCGTGGACGACCCGCGTGCCCGGGTCACCGCCCTCGCCCGCGCCTACCTGAACTTCGCCGAACGCAACCCGGCGGTCTACGACGCCATGTTCAACCTCGACGGCGGCCTCGCCTTCGCGCACGAGGACACGCCGGAGCCGCTGAAGGACGCGTTCGCCGCCCTGCTGGAGACACTCGGCGAGGTCGCCGGGGACGGCGTCCCCCCGGGCCTGTTCACCGAACTCTTCTGGGCGTCCCTCCACGGACTCGCCACCCTGACCCGGGCCGGGCGGCTCCCGCCGGGGGACACCGACCGTAGGACGGCGCTGCTGGTCGACCGCCTCGCCGTCCTCTGACGCGCCGCCGGTCGGTGGCCGGTGGTCGGTGGCGAAGGGCAGGGCGGGGCCCTCGGCGCAACTGTCCGGCTCCACCCCGCCGCTGTAGGACGACTCGCGCCACCCGGGGTCGCGCGCCCGGGTGC # Right flank : ACCGACGCTGGACGGGGGAGCGGGCCTCCCGTTTCTCTGCACGGGCGGGGCGGGCGGACGGCGGGAGTTGTGGTCGCAGAGGGGAGCGGGGCGCTGGGCCGCTGACGTCGATACGGGGTGGGGGCGGACGAACGGTCGCCTCGTGTGATGCTGGCGGGATGAGCGATCAACCTGAGGTTGCCGTGGTTCGGTGGCCGGACCGGGCGCCTCCGGTCGGGGACGGGCTGGCCGGGCTGTTGGCGGCCTACCATCTGCGGACCGAGGCCGAGAAGGGGGCGCCGGTCGCGGGGGTGGACGGGCTGCCGGACCGGTACCGGGCGGAGATCACCGACCCTCGGAGCGCGTTCGCCGACGATGTCGTGCTGGTGGCGCTCGTGGGGGACGCAGCCGTGGGCTGTGTGGTGGCGACGCGCCCTGACCACGGGCACTCCGAGGTCAAGAGGCTCTGGACCGACCCCGAGTCGCGAGGCCGGGGCGTCGCGTCCGCCTTGCTCAGCGCG # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 30411-30805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000220.1 Streptomyces sp. CBMA29 CBMA29_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30411 29 100.0 32 ............................. TTCGCGGTCTCGTTCTCCGCGATGTCCGACGG 30472 29 100.0 32 ............................. GGGTCGTGCCCGGCGCTCTCCATCCAGCCGTG 30533 29 89.7 32 .....T.......GA.............. GCCGCCTACCTCGCGGCGGCCGGTGTCGCCAA 30594 29 96.6 32 .....T....................... GCCACGGACCTGAGGGGCAACAGCAACAGCAC 30655 29 96.6 32 ..C.......................... TTGGCGAAGGCATACGCCGAGCACCAGACCCA 30716 29 100.0 32 ............................. TGTCCACGCGTTCCGGGCAGACGGATACCCCC 30777 29 79.3 0 .......................ATGGAT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GAGGCCGGGGCGTCGCGTCCGCCTTGCTCAGCGCGGCGTTCGCGCAGGCGGCGGAGAACGGCGCGGACACGGTCCGGCTCTCGGTGTGGACGTGGCGGACCGGGGCCATCACGCTGTACGAACGGCTCGGCTTCACCGTCACCGAGTCGTGGGACGAGCGGGACCAACTGGTCTGCATGCAGCGCGCCTTGTGAACGGTCGCCGTCATCCGTTGACGTCCGCACAATCGCGTATCGCGCGGCGACGGCACGGCGCGTCGTGGCCCCCGCGTCAGCCGGGATGGCCCAGCCGTCTGGACGGCCGTCGTGCCGCGCGTCGCACTGGTGCCCACCCACGCCACGAGCCTCGTGACGACCTCAGCCGCTCCTGCCCGTGCCCTCGGGGCGGCTCTACGCTGTACGCGGGCCGTCTCCATCCGCGCCGGTTCGCCGCCTTTGCCCGATCCTCGCCACCTGATGAAATCCGGCCCCAACCGCCGGCAAACCCCGACGTCAGCAAGC # Right flank : TGTGTGGCACGCGCCGCAGGTGGCCGCGAGGCTCATGGCGGGTGGGGCGATTGCGGTCCTCGGCGCCCTGGTCCTGGCCCGGTCGGCGGGCCGGATGGCCATCGCCTTGGTGCTGTACACCGAGTAGATCATCCGGCGGCACCAGCATCTGGAACCGGCCCGAGGCAGCCGACGGCACCCCTGCGGGCGGCTCAGGGCTCCGGCTCAGGGGGCCGTGAAGAGCGTCGGGAAGCGGGGCGCGAGCCAGGGCCTGCGGCCCCAGGCCAGGATCGCGCCGCGCGCGAGCGCGCTCGTGGTGGTGCGGCGGCCGAGGGCGATGAGGAGGAAGGTGACGGGCTCGGTGACGATCGTGCAGTCGGGGCGGCGGGGCGGGGCGTCGGTGACGGCGAGGGCCCCGTCGGTGAAGGTGGCGGTGAAGCGGGGGCCGCCGCGCAGGCGGAGGTCGTAGCAGGCGGTGTGCCCGGCGGTGGCGCGGGGCTCGACGACGCGGGGCATGGCGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29787-29513 **** Predicted by CRISPRDetect 2.4 *** >NZ_MECL01000077.1 Streptomyces sp. CBMA29 CBMA29_168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29786 29 100.0 32 ............................. TGCGTGACGCGGACCGTGTCGCCCCGGTACCC 29725 29 93.1 32 TC........................... CGGCCCGGCGACATCGTCCTGACGATCCCGCC 29664 29 100.0 32 ............................. GGCACGGGCGAGGTATGGCTCGACGCCAGAGA 29603 29 100.0 32 ............................. AGCAGCGCCTTGCCCTTGGGCAGGGCGCGGAT C [29588] 29541 29 79.3 0 ...........C.G........C.CC.G. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 CTGCTCCCCGCGCCCGCGGGGCTGTTCCC # Left flank : GCCTCCCGCTCCCGGGGCCGCGCCTTCGAGCGCATCATGCTGCTCGGCGGTGATGACGTGGTCGAGGCCACCCACGACCTCAACGCTGCTGCCCTCGCCGTCGACTGGCAGGCCACCGGCAAGACCCCCGACACCCTCGCCGCCTGGCGCGGCCGCAACCGCGCCGGTTTCCGCGCCATCAACGCCTTTCACGGAACAGGCCGCGTTGACCTCGGTGTCAGCGGCACCGTCACGGGCGACACCCACCCGGACCGTGACCTCCTGCTTCCACCAGCCCGCCGTGACAACAACGCCGGCACCTGAGGGTGGTGCGGGGCCCTCCGTCCTTGCATCCCCTTGGCCGTTCGTGGCCCCAGGGCGGCAATGGATGCTAAGGATGTTGTGGAGCCGTACCTCCAGCCTGCACATCGGCAGGCTATTCCGATAAGGGAGGTATGTCCGAATCTCGTCAAGTGAGTAAAATCCGCCGCCGAACCGAGTAAAGCCCCAGGTCATTTGCT # Right flank : CTCCTGGACGGGTGAGCGATGAGCGTATTTGACCGATTGGCGATCGCGGTCGATCGGTTGTTGTCACGTGCGGACTTTCGGTCTGTCGTCGGCAGGTCTTGTGGTCGAGTGCTGCCATGAGCGGCGAGTCACCCGCGGGGCGGGGGGGTGTTCGAAGGGGTTTCGGGGGCCGCGCGGAGTGCGTGGGGGAAGCATGATCGGGACACCGATGGGTGGCTGCCGTTGTGGCGGCACATGGCGGACAGTGGGGCTGTGGTCGGCCGGTTGTGGGATGGGTGGCTGCCGGGGAATGTGAAGGCGCTGGTGGGGGAGGCGCCGCCTGGAGGGGTGGAGGACGGGCGGCGGTTGGTGGGGTGGCTGGCCGGAGTGCATGACATCGGCAAGGCCACGCCGGCCTTCGCGTGTCAGGTCGATCCGCTCGCGCAGGCCGTGCGGGACCGCGGTCTCGACATGCCGTCGTTCGAACGGCTCAGGGAGGACCGCATGTTGGGGCCCCATGG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //