Array 1 41559-41129 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PZGC01000017.1 Staphylococcus simulans strain SNUC 2141 contig017, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     41558	    36	 100.0	    30	....................................	ACGATTAAACAATAAGTCCAAACCGTGCTT	
     41492	    36	 100.0	    29	....................................	AGAAAGAGAAAAAGCCATTAAAATGTTGG 	
     41427	    36	 100.0	    30	....................................	CTTTACGTGACGGGGATATTGACCGCCCTG	
     41361	    36	 100.0	    30	....................................	GTAGTCAACAAGCATTTCTCTTTTATTACG	
     41295	    36	 100.0	    29	....................................	AATTTTTCCATGTAGTCGGCAATGTATTT 	
     41230	    36	 100.0	    30	....................................	TCACGCCAACTATCAACTAAAGGTTTCAGC	
     41164	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         7	    36	 100.0	    30	GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC	                              	       

# Left flank :   ATTATCAAGCGAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGGTTTGAGTATTTGTTTAAAAAATATTGCTCAGTTTTAGAGGTTAATCCTGTAATATCCAACTATACTCTCGGTGATATAATTGTTTTCAATGATTTAGATCTTTATGTAGTTGTTGCATTTTTAAAGTATTGCAAATTAGAGTGTCAACTAGATATTGATCGAACAAAAATTTCTTCAGCATTATCGGCTTATCTATTTTCTTGACTATGATTAAATTATATAATTGTGCTAGAG
# Right flank :  GTAATTCTTTAACTAGTTGTTCTAATACTCGTTTTAGTACTCTGTAATTTTTAAGCAGCTCCGGCTGCTTTATTTAGTTCATTTACGAACATTCCGCAAAGTTTGTTTAGTTACTGTAAATAGGGTTTTTAAAGAAGGAAAGTTTGGTTACGTTAAAGATGAGTAAACTAGATAAACTTAGGAGGCCTATAATGAGAAAAATCGGTATCTTTTTAACAACGTTAGTTGCGGTAGCATTAATTTTTACTGGAATTGAAGACATTGTGAAAGGTGCAGAAGCTCAAGCAGCTAAAGCAGTTACGGGTGAAGTAGTTTCTGATGAATTGGATCCAGACGGTGACAGATGGGCAAATATCGGATTTGAAAATATCAAATTAGATGAACCTTACCAAACTAAGTTAGTTCAATTAACACATCTGAAAGACACTGGTAAAATGTCTACGACTGAATACAATGAAAAAGTTGCTGCATTAATTTCAGAAGCAAGATCAATTGATGCA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAGTTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-3.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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