Array 1 242439-241670 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UGQS01000001.1 Bergeriella denitrificans strain NCTC10295, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	====================================	=====================================	==================
    242438	    35	  75.0	    37	.....G.A.TGG.G.-..G......G..........	GGGATTCCGCACCGATTGATAACTGATAAGTTATATT	G [242427]
    242365	    36	 100.0	    30	....................................	TTCTAGAAAAGTTTGATGTTGACGCAAATT       	
    242299	    36	 100.0	    30	....................................	TATAAATCAATCAAATTTGTAGGACCGAAA       	
    242233	    36	 100.0	    30	....................................	AGCGATAACTTTGGCATCTACGCTTTCATT       	
    242167	    36	 100.0	    30	....................................	GCCCCAGCTTAAGCAGGCATCCGGCCATTC       	
    242101	    36	 100.0	    30	....................................	ATACGGAAGCAGTAGCTGTCCGGTTTTAAA       	
    242035	    36	 100.0	    30	....................................	GTCGACAACAGGGTTTGGCAGACCAAAAAG       	
    241969	    36	 100.0	    30	....................................	CCCTGATATCAACTTGTTTTCGGAGTGATA       	
    241903	    36	 100.0	    30	....................................	TGCCGCGAAGTGTGATAGCCCGCTGACCAA       	
    241837	    36	 100.0	    30	....................................	CAAAGCGGAGCGGGAGCGTGCCGAAATCAT       	
    241771	    36	 100.0	    30	....................................	GCACGCCCATAACGTAGTATCTTGCGATTA       	
    241705	    36	 100.0	     0	....................................	|                                    	
==========	======	======	======	====================================	=====================================	==================
        12	    36	  97.9	    31	GTTGTAGCTCCCTCTCTCATCTCGTAGTGCTACAAT	                                     	       

# Left flank :   ACTCGGCTTAATCGGCTGGCTCTCCGACTACCTGCAAGCCGGTATTTCAGGCATGGGCTTAGGCTGGCAAGGCGGCTGCGCCCTTCTGATGCTGGCCTACCTCTACGCACACTACGTCTTCGCCAGCGGCACGGCGCACGTTACCGCCATGTTCGGCGCATTCTACGGCGCAGGCTTGGCCTTGGGCGCCCCGCCCATGCTGTTTGCCCTGATGATGGCTGCCGCCACCGGCATCATGATGTCGCTGACCCACTACGCATCAGGCTCTTCCCCCGTGATTTACGGCTCGGGTTTCGTCACCATGACCGAATGGTGGAAAGCCGGCTTCATCATGAGCGTTTTAGAACTCCTGATTTTCGCCACCATCGGCCTGGCCTGGTGGAAGGTATTGGGCCATTGGTAAACCCGCATTGGGTTGCAGAAACCGCATAAAGCAGAAAAAGCCGTCTGAAAAACAAGCGATTTTCAGACGGCTTTTTTGTAGGCGGATTGCGTAGATT
# Right flank :  ACCCAAGCCGGGAACCCTTATAAAACAAGGGTTCCCGGCTTTATTTCTGCCTAAAATTCCGTTTTAAAACAGCAAAAGCTGGTCGGCGTTGACCTTTTTTTCGCGCGTTTTCGGCTCGCCGATCAGCATCACCATACCCGCATACTGCTTTTCCGTTACCTCCAAATAACGAACCTGACCCTCTTCGGGCAGCTGTTGCAGCAGCCTTTTGTGGTGTTTCTGCAACGCATCGCGCCCGCGAACGATACGCGAATACACCGACAATTGCAGCATCTGGTAGCCGTCTTTCTGCAAAAACTTACGGAATTGGTTGGCCGCCTTGCGTTTGGCGGCGGTGGTAACGGGCAGGTCGAAAAAGACGATTAAGCGCATAAATTTGGCCTCATTCATAATCATGCTCTTTCAAAGGCAGCATTTGCGGCAGTTTCAGCAGCTTGGGATTGTTTTCGATTAATGCCGTCTGAAAAGACTGTATGGTGCGGTCGATGGCGGCCAACAGG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTCTCTCATCTCGTAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.50,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//