Array 1 133222-138497 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKI01000005.1 Rothia kristinae strain DE0322 NODE_5_length_162786_cov_312.521211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 133222 28 100.0 33 ............................ CCGCAACCGCGTCGCGTTCTACACGGCCCAGAC 133283 28 100.0 33 ............................ CAGGGCTTGCCCCTCGGCGTCGAGGTCGATCAT 133344 28 100.0 33 ............................ GGACCTGCCGAAGATTCTGACGCACGCGACCCT 133405 28 100.0 33 ............................ CAGCGTGTTCCGGCCCTTCACGAACTCGTGCGG 133466 28 100.0 33 ............................ CTCGCCCGTGCTGTTGGCGTGCCGGGCAAGCTG 133527 28 100.0 33 ............................ GCTGCCGAGCTCGCGGGGCCGGGTGGACACCGC 133588 28 100.0 33 ............................ TCGGGACAATGATTCCTCGATTTCTTCTTTGTG 133649 28 100.0 33 ............................ TGATGGGGAGACGGTGACGTACACCCTCAACTA 133710 28 100.0 33 ............................ TGGACGTTCGCCCGCATTTACCAAATTCCGGTG 133771 28 100.0 33 ............................ GCCGCGCACGGTCTTCTCCGGGTAGAGCTTGCC 133832 28 100.0 33 ............................ TCTCCACGTCCAGTTCCCGCAGCGTCTCCGGGA 133893 28 100.0 33 ............................ CTCATGCTCACCGTGACCAAAAAATACGATCTG 133954 28 100.0 33 ............................ GCGGACGATAACGGGGCGTCCCTTCATAGGGTT 134015 28 100.0 33 ............................ ACCCCCCGCACCTCAAAGGGTGCGAGGGGCACG 134076 28 100.0 33 ............................ CTCTGCGCGGGCGCTCCCGTTGTTCCAGCGGAT 134137 28 100.0 33 ............................ GTCCGCAAGCAGCAGGGGGTCCAATGCGGTGCC 134198 28 100.0 33 ............................ CTTCTGGGCGGCGAGCTCCATGGGGGGGATTCC 134259 28 100.0 33 ............................ GAACTTCCTCGAGCGAACCCTCGGTCCGGTGTT 134320 28 100.0 33 ............................ GGCGTCCCAGGAGGAGAAGTCCAGGCTGCGCAG 134381 28 100.0 33 ............................ CCGGGACCTTGAAATCTGGTGGGGCCGACGACA 134442 28 100.0 33 ............................ GGTCACCACCGATGGGAAGGTGTGGGAGTCCAT 134503 28 100.0 33 ............................ GTGGCCCGGGCCTGCCCAGCCCACAGGTCCAGG 134564 28 100.0 33 ............................ GAACTTCCTCGAGCGAACCCTCGGTCCGGTGTT 134625 28 100.0 33 ............................ GAACGCGATCCCGGAATCTGGGTCGTCGATAGC 134686 28 100.0 33 ............................ CCTCGTCTCTCCAGCGCATGAGTCGCCGGGGCC 134747 28 100.0 33 ............................ CCAGGACTGGACCACCGTCGACGACGGGTACGT 134808 28 100.0 33 ............................ GCGCATCCGGATCGACGGGGCCCTGAAGGCCGG 134869 28 100.0 33 ............................ TGGAACGCACGCAATGTCGCCCCACGACCCGAA 134930 28 100.0 33 ............................ GCAGCGCAGTAGTCCAGCACCATCGCGGATAGC 134991 28 100.0 33 ............................ CGGTGCTAAGAGAGAGAACGGCACCCGACGGCA 135052 28 100.0 33 ............................ GGAGAAAGTCCGGCGCGGAAGCATCGTCAAGTC 135113 28 100.0 33 ............................ GCGCGCTAAGGCGGGCAAGCATGGCGTCCTGCG 135174 28 100.0 33 ............................ CCTCTCTCTCGCAGTGGGGGGTCTGACGATAGC 135235 28 100.0 33 ............................ GTCCGTCGTCAGGTCCGAGATGCCCGTCGCGTA 135296 28 100.0 33 ............................ CAGACGGCCTCTCATCTCTGACATGTCCTCTCT 135357 28 100.0 33 ............................ CTGATCCCCCGCGCTGGTGGTGTAGACGCTGGC 135418 28 100.0 33 ............................ GATCATCACCGGTCGGGCGCCGCGGTTGCGAGC 135479 28 100.0 33 ............................ GTGGATATGCCGGGACGGGTCGGGACGGGTCGG 135540 28 100.0 33 ............................ GTCGCGGGCGGGATGGTCTTGGACCCCGGGGCC 135601 28 100.0 33 ............................ GTGGTCCATGACCGAGGACGAGTCGCGGGCCGC 135662 28 100.0 33 ............................ TTCGGGCCGGAGTTCCTGGACCCGGACACGATC 135723 28 100.0 33 ............................ GGTCCGCGCCCCATAGGACAAGCCACCCGCGGA 135784 28 100.0 33 ............................ GGTCAAGGATCCGGCGATGATCCGCCGATGGAG 135845 28 100.0 33 ............................ GAAGACCTCGGTCGCCGGCGAGGCCGCGTGGCG 135906 28 100.0 33 ............................ GCCCGGCGCCGAGACCTTCCAGCGGTGGGTCGA 135967 28 100.0 33 ............................ GACGAGAGAAGGGCCCCGCCCCTCCATCGTGAG 136028 28 100.0 33 ............................ GACGCCTCTCACTGGGACTAACGCAAACATTGG 136089 28 100.0 33 ............................ CTTCGATACGTCCGACTGGTCATTGTCGGAGAT 136150 28 100.0 33 ............................ GGGAGAGCGCGGCGAACCCGGTCCGCCCGGCGT 136211 28 100.0 33 ............................ GTTCGCCAGGGGGTTGAACGGGTCATCCGGCAG 136272 28 100.0 33 ............................ GACCACGACGGCACCCACTACTGGACCCGCCCC 136333 28 100.0 33 ............................ GCTCAACAAGCAGACCAACCAGTACGAAGACAC 136394 28 100.0 33 ............................ GCGGTCCACGGTCTCCCGGAAGCTCCAGGGCCA 136455 28 100.0 33 ............................ GCCGGGGACTAGTGCAATAAGTCACACCTCGGA 136516 28 100.0 33 ............................ TGACCAGTCGGACGTGTCGAAGCTGCGGGTGAA 136577 28 100.0 33 ............................ CATCGGCCGTGCGGCTTGCCTCCACCGGCCGGA 136638 28 100.0 34 ............................ GGCGACCCCGGAGGTCGTGGAGACTGCCGCACCT 136700 28 100.0 33 ............................ CCAGTAGCCATTGATTCCTCCTTAGATGTAGGT 136761 28 100.0 34 ............................ ACCCCGACGCCCGAAGGAACCGGACCGCCCGCGC 136823 28 100.0 33 ............................ GCAACGCGAAACGTCCCCATGGCGAGCGAAGGA 136884 28 100.0 33 ............................ CCGCCCCGCGAACCACTCCTCGAACTCGGCGAC 136945 28 100.0 33 ............................ CCGCCGAGCGGTCCCGGTTCCAGCGTCCAGGCA 137006 28 100.0 33 ............................ ATCACCGCGCCCACCAGGAGCCCGAGAGCCACG 137067 28 100.0 33 ............................ GCTGCCCGCGCTGGTGGGGGCCGCGGGGATCGG 137128 28 100.0 34 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGCG 137190 28 96.4 33 .....................G...... CCGAGTGGCCCTGCGAGGGGCCAGGTCACCGGC 137251 28 100.0 33 ............................ GGACACGGTGGACGTGTGGGGGCCGTTCGCGGC 137312 28 100.0 33 ............................ CACGACCATCTCCAGCCGCTTCTTGTCGATCCG 137373 28 100.0 33 ............................ GACCCGCGACAGGGAGGCCCGGTGGATCGACGC 137434 28 100.0 33 ............................ CCACGGCAGTCACCCCGAAAGGCCACCCCATGA 137495 28 100.0 33 ............................ TGTGTTGGGCCCGATTTTCAACTGGTTGTACAA 137556 28 100.0 33 ............................ GTCGTGCCCCATCAGGTCCAGGTCGGTCGAGTC 137617 28 100.0 33 ............................ GACGCAGACGACGTTGGACGAATCTGGGTCTGT 137678 28 100.0 33 ............................ TCCGTCGCCGATGGCGTGGATGCGTTTCACCAC 137739 28 100.0 33 ............................ TCGTCATGGCCTGCGCCCGGGTCACCGGCTGAG 137800 28 100.0 33 ............................ GCCAGCGGAGCCCTTGGACAGTCCACGCCGCGC 137861 28 100.0 33 ............................ GATGAAGCTCTGGTTCGGGGCGATCTGGAATGG 137922 28 100.0 33 ............................ CTTGCACCACACGCCGCGCGCCAGAACGTCGTC 137983 28 100.0 33 ............................ GACGTGGACTGGTCTCACGTCCGGCCGCGCTCG 138044 28 100.0 33 ............................ GGATGTTCGAACCGCAGGTGGGTGCTGCACGCC 138105 28 100.0 33 ............................ CTTGCACCACACGCCGCGCGCCAGAACGTCGTC 138166 28 100.0 33 ............................ GACGTGGACTGGTCTCACGTCCGGCCGCGCTCG 138227 28 100.0 33 ............................ GGATGTTCGAACCGCAGGTGGGTGCTGCACGCC 138288 28 100.0 33 ............................ CAAGCGCAGTCGACTCGTCCCCGCGCACCAGTA 138349 28 100.0 33 ............................ CCAGCTCATGTGGGCGACGAATCAGAGGCAGGT 138410 28 89.3 33 ..........T....A..........A. GTGGTACAGCAGCACGTACCGGCCGTTGTCCAG 138471 27 92.9 0 .......................-.C.. | ========== ====== ====== ====== ============================ ================================== ================== 87 28 99.8 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGGGAAGACGGCGTCGAACCGGGGAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTACTCACTGCCTGCCCGGCAGGTCTTCGAGGCGACCTGACCAAGTGGCTCTTGGAGGTCAGCCCGGGGACGTTCGTCGGCAACGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAGGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCGGTGGACATGGAGGGCCTGACACTGGTCAGACGGCCCTTGCCGAGCAGTCGGCCCGCCGAGAAGAATCCCCGGCGTACCGGCTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGAGGATCGCGCTGATGATGCTCTCCGATAAACTGAATCTGAACCGGCTGACTTCCTGACGTTTCCCCAGGTCAGGAAGC # Right flank : CCTGCCGAACGACCCTAGATCAGACGTGGGCCGTGCGCGAGGCCCTCGGGGGATCCGTCTTACCCGCCCTCCATACGGCAACCGTCGCAGACCCCTCTACAGCGACATGTAAAAAATTCTCCAGATTTTTTACACGTTCAGCGGACCTGCAAACCTCTTTGACATGTCGTGAGCTCCGCCCCGGAACGCTCCCCCGGAACGCCCCCACCCCCGAAACACCAGCCCGCTACCATCATCCCCATGTCGCACATCACCCCCACCGACGGCCCCACTACCGCCACCCGCCCCTCCCCCGCCTTCCTGACCGCCGCCGAAGCCATCGGCCCCGAGCTGCGGGCCTTCCGCCGGGAGCTGCACCGCAATCCGGAGCTGGGAACGCACCTGCCGTGGACGCAGGCGCGGGTGCTGGAGCAGCTGGAAGGTCTGCCCCTGGAGATCACCACGGGCCGGACCCTCACCTCCGTCACCGCGGTGCTGCGCGGGCAGGGTCGACCCACGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 74866-74288 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEKI01000013.1 Rothia kristinae strain DE0322 NODE_13_length_78708_cov_285.367614, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74865 29 100.0 32 ............................. AGGGATTCCGCGCTGAAAGGCGCCGGCGAAGT 74804 29 96.6 32 ............................G TTGTCCTCCATCGGCAACACTGGCTTGCAGTC 74743 29 100.0 32 ............................. GAGCTCAACCAGCACGGCATCAACGGCATCCA 74682 29 96.6 32 ..................C.......... GAGCTGAACCAGCACGGCGTGAACGGTATCCA 74621 29 100.0 32 ............................. CGGTAGAGCAGGAGGTCGTCCGTGATGGGGAG 74560 29 100.0 32 ............................. TCGAAAAGGTCTGTTTGTCCTTGAATGGGCTT 74499 29 100.0 32 ............................. ACCAGAGCTGCGATCCACTGCCCGAACAGCAT 74438 29 96.6 32 ..................C.......... CCGCCTACGTGAACAGTGCGGTGCGATCAGGA 74377 29 96.6 32 ...................C......... TACGACGCCGAGACGGCGGACGCGATGAAGTC 74316 29 86.2 0 C.........T.............G...G | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GGACGGCCCACGCACGCGAGGGTGAGCCC # Left flank : AAATCCGGGTTGAACCGCTCGGTGCTTGACGCCGCGTTCGGTGAGCTGCGTCGGCAGCTCGAGTACAAGACCGCGTGGTACGGCTCGTCCGTGGCCACGATCGGCAGGTACGAACCGTCGTCGAAGGCATGCTCATCCTGCGGGGCAGTGAAACCCAAGCTGTCCCTGGGTGAGCGGGTCTACGACTGTGACCAGTGCGGGATGCGCCTGGACCGTGATGTGAACGCGGCCCGGAACATTCTCGCCTGGGCCACCGGCGGACGTGACCAGCCACCTGCCCCCGGCACGGGGGCTGACGGGCGTGGAGAACCAGCACCGCCCTCACCACCAGGTGAGGGGCCACCGGCGCCGGTTCAACGAAGCGCTAAGACCGGGTACGTACCGCACCCGGCCACCGCAGCCGAGCAATCGGCTGCTCACCCCCACCAATCGCGTACCCCGATCCCGCCAAGCTGAACCTGCGGCACCCCGCTCGACGGTGTTCCCTCAGGTCACGAAGT # Right flank : TTCCGTATGAGCATCAACGGCGGCGCTTCCCTGGGCGGTCTACGCGCGCGGGAGCTCCGCTGCGAATCAAGGCTCGGCCTCCACTGCGGACGCTCGAGGCGCTTCCAATGGGCCATGCGAGGTTCTGGTCCTCGTACCGGCCCCTGACCCACTGCGGACCCCCGCCCCCGGGGTCTTGCCGCTACCCGTGAGCGCCGGGGCCCCGGGCGGGGCCCCGGCGGGTGGGATTCAGCTGAAGCGCGGGGCGTGGCTGAGGGATTCCAGGCGGGTGTCGAGGTCGGCGGGGTGGACGCCGTAGAAGTGCTCGTGCATCATCTCGGCGTCGTTCTCGCTGGTGTAAGTCACCTGCACGTCCAGTAGGTCATCTTCCTCGGTGATGGCCAGGTTCATGTCCCGCGGGGTGCCCAGTGCGCCCATGCCGAGGTTGGGGCGCAGGCGGATGATGGCCTCCAGGTGGCGCAGGCCCTCGGCGGTGGTCGTCTCGTGGAGCTGACGGGCGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGGCCCACGCACGCGAGGGTGAGCCC # Alternate repeat : GGACGGCCCACGCACGCGCGGGTGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //