Array 1 6192-5217 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 6191 30 100.0 37 .............................. AATTTGCGGAAGTCTTGAACCTTAGCCAGTGTGCTTG 6124 30 100.0 37 .............................. TCGGATACTTGGATGCTATGAATCAGCTTCAAGTGAA 6057 30 100.0 38 .............................. GCGGAAGCGTTTGGGGAAGCCCCTGCTCTACTCTCCGC 5989 30 100.0 39 .............................. CACTTTTGACAGGTTTTGATACCCTTCCATTTCCCCAAA 5920 30 100.0 38 .............................. ATGCTTGTCTGGAATTGATCCATATACAGGGCGACGAA 5852 30 100.0 37 .............................. AATTTCGTGTCCTGAGCACCTTCAATCAACTTGCAAT 5785 30 100.0 39 .............................. TAACGTCCATTCAGGTTGGCCCTGCTCAAGATCTTACGA 5716 30 100.0 37 .............................. CACTGGTAAGACCTCTTAATACTCTTTTCAATCCTCC 5649 30 100.0 36 .............................. ACCTTGGCTAATGCGACTCCCCTAGCGCTTTGCCAT 5583 30 100.0 37 .............................. GATACCTTCCTTTGTCTTGTATTATTGTTTGATCTTT 5516 30 100.0 41 .............................. TCGGTATATCCTCCGACTTGGTGAGAGTCATAACCTTCTTT 5445 30 96.7 39 ................C............. AACTGATCTTCTACTTGTTCCCACGTTAACATAGCATCC 5376 30 96.7 38 ................C............. CATGGATGCGCGGACGGAAACTGTACCGTTTCCTTACA 5308 30 96.7 32 .............T................ GAATTTGGTCCGAACGAAGAAAGTTTCATGAA 5246 30 90.0 0 ......................G.AT.... | ========== ====== ====== ====== ============================== ========================================= ================== 15 30 98.7 38 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : AAGGTGGGGGAAAACGCCCCCGGTGGTCGGCATCCGTTTAAACGTCCGTTAATCATGGTTCAACCGGGATCTTGTTTTTACTCACCAAGCTTGCCCCCTTACTTCGGTACGGTGGTGAGAAATGTTTCACCAGAAAATCCAAAGATCGTGCAGCTTTGCTTTGGTCTGACCGTTCCTGTGAGGCTTCCGAAGTTAGACGGAGACCAACCTAAAGAAGCTTAAAGCGGAGCTGAATAGTATAATCGAAGGCGATGACGATTCGGTTATTTTCTATACCTGGCGGACCCAGAAGTACTCGGATCGGGAGTCATGGGCTTGGAAAAAGATGGACAAAGCCTTATAATTTAACTGTGCATGTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCCGGGGATCGACGACAACGATAGCTGCACGGCGGAAGGGTTTGTAGCGTTAGCTGTGGGAGAGATGAAATTATGGGATATGTGGAAATGGCGTAGTGGCGGGATTTTTATGG # Right flank : CTTGTAATATAATAATCTGTAAAGCCTTGCTGCATAAGGGGCTTTAATGAGGGGGAAACTGTCCCGTTTTCGTTTTGGGGGCGAATTGGGGACGGACTCTATATATCAGAAAGGCGGCGTTCGAACCTATCAAATTCTGAGGCTGCCCGTTCTTCCATTGTTTTGTAACGTGGCTGTATGTCGTAATCAAGGTGCGCTCATCTGAGTGCCCTAAGCGTTCGGCTACAGTACTCTTTCATGTACCAAGCTCTCAAGCGCCATAACCTCTCCGCGTCGAAACGCACCGGAAGATGTCCCCAAGATCATGATTCGCCAAACTACAGACCGTCGGTATAGCGTATCAACGATCGCAGCTATTTCAGCTTCGTCGTAAACTTCGATCTTCGTCTTTGATTTCTTTGGCCAGCGTAGGCCGTCGCAGGGATTCGTATTGATTAAATTCCATTCCTTTGCACGGCAGAAGACGTTTCGCAATACCCGAAGAATGTACCTAAAAGTTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 22815-22178 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22814 30 100.0 38 .............................. AAGGAACGGTCCAAGGAGGCGCGACAATTTTGATTGTA 22746 30 100.0 39 .............................. TTCGGTGTAGGCTTTCTGTATTTCATGTTTCAAGTGTTG 22677 30 100.0 37 .............................. CCTACACCGGCGATACCCGGGGCGATCTTTGGGAATG 22610 30 100.0 38 .............................. TTTTGTTTTGAAGGGAGGGAAGCAATTTGAGCAGACGA 22542 30 100.0 38 .............................. ATGGTTTCTCAGGTTTCTTTAACTTAAGAAGTTTTTCG 22474 30 100.0 37 .............................. CGCGGTACATGCAGGAGTGGAGGAACCAACAAAAGGC 22407 30 100.0 37 .............................. ATACTCTGTCGGGGCAATGGTGAATGAGCCGATCCAA 22340 30 100.0 38 .............................. CGTACCACGAATTCGCCTGCGATTGTACTGACATACAA 22272 30 100.0 35 .............................. CCAGGAGGCAGCTTGAACAAGTCTCATCATCCTTC 22207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 38 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TAGCTGACGACGTATTGACTTTCATAAGTCAGACAGAAGTTGAAGGTTTTTGGCTTCATTTGGATGCGGACATACTGGATGCCGCGATCATGCCTTGTGTGGATTGCCCGGAGTCCGATGGTCTACAGTGGGACGAATTAACCATCCTTTTGAACAGGATACTTTCTTCGCCTAAAGTGATCGGGATGGATGTGACTATTTTAGATCCTGATCTGGACATAAGGCATGAGGTAACGCGAACTTTTTCTGCATTATTAACAAAAGTGTTGAGTGTGGACAGTAATCCGACACGAGGAAGCGTGAGATCATAGGGATTGGAAAAAGGTGGGGGACGTATTATAATTTAACTGTGCTGAAATTGTCGTCGACCCCCAATGCTGCAAAAAAGCCCGGGGATCGACGACAAATGAATGGCGTAGCGGCGGGATTTTGGCGATTTGGGTGACTTGAATGTGATTTTGTAAAGAAAGGAAACTGCAGGAATTACGGCATTTTGATGG # Right flank : TTTAAGAACCGCCCTTCCCATAACCTGCAAACAGCGCTTTGGAGATGAAGAACCTGAAAAGAAAATACGGAGATCGTGCAGATTGGAAGCGTGTAGTGGAGAGAAGGTATGCTCAGTCTTATTTGGAAACGGGGAGCTATAAAGGGATGTAACACTTCTTGAAATTTCCAAAGTTACAGAACCTTTATACGTTACCTATGACGATAAAAATATTTGTATTGCTGATGACGGTTATTTGTGGCTTCAACAGTTCCCTTCCAATAAACATCATTCGGTGACAATAATGTTTGACGCAAGAGGGAAAATAGTTCAATGGTACATTGATATCTGTTATATGAACGGAGTTGGCGAAAACAACATACCTTGGATGGATGACTTGTACTTAGATATCATCATCTTACCGTCGGGAGAAGTTGTCCAGAAGGATGCTGATGAACTGGAAGAAGCCTTGAGGAATGGCATTATTGATAAGCAACTTTATGATATGGCTTGGGAAGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 31855-31228 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 31854 28 100.0 38 ............................ CCTCGCTCTTGGTATCGCAGGAGCAGCCATATTCACGC 31788 28 100.0 39 ............................ CCCTTCATGCGGTAGAGGCGCGTATGGAAGGGGGCCGGG 31721 28 100.0 38 ............................ CCCCATTTTGAGTTGGATTGTACTCAACTACGCCGCCG 31655 28 100.0 38 ............................ CCCCATTTTGAGTTGGATTGTACTCAACTACGCCGCCG 31589 28 100.0 40 ............................ CCCGAGCCTCCCCGCGATAGTACGCCTCGGCCTGGTCCCA 31521 28 100.0 39 ............................ CCTCTGCGAAGGTTGAATTTTCGCCGGAAGCTGAAAAGC 31454 28 100.0 39 ............................ ACCAGCACGACAGTTTAAAGTTTGTTTCCATAACCTTTC 31387 28 100.0 39 ............................ ACACATAAAGTAAGTTCAAAATAAATGAAGGGTCAGGAA 31320 28 100.0 37 ............................ ACAGCTCATCGATCCTCGCCCTCCGTTCTTCCGGGGA 31255 28 89.3 0 ....T...T............T...... | ========== ====== ====== ====== ============================ ======================================== ================== 10 28 98.9 39 GTTTAGAACGTACCTATGAGGAATTGAA # Left flank : ATAACCTGAAGAATTCTGTTTTGCTAACGACCATGGAATCATCCCTTTTTTCAGTCATCTTCTGCCGTACCTCCTCGGAGTCCCCGCTTAAAAGGCAGTTATTCAATATAATTATTTTGTTTTCATTTTACCATGCGTTTCCTTTCTTTGTCCTGACAGACTACACTCTTACTAGGAATGTGTTCAACTGGTTAACCGCCTGCTCTTCAATATCAACTCCTCTTCGGCCTGTCTTATCATAGCTTCAAAAAATAATCGTTTTACTGAAGAAGACTGAAAATATTTGTCTGATGTTAAAACCGGGGATCCATGGGTTGGAAAAAGGTGGACAAAGGCTTATAATTTAACTATGTTGTTTTGTCGTCGACCCCCAATGCTGCAAAAATACCGGGAGATCGACGACAACGATAGCAGCGTGGTAGAAGGGATTACGATATTTGCTGTGGTCGACCTGTAATTCTGGGATATGTAGAAATGGCTTAACGGCGGGATTTTGATGG # Right flank : ACTCCGTTGTTTTTTCAGCCGATCAGCTTCCAAATGATCACATCCGGGAAAAATATTTTCCCGAGGTGATTGGCTGCCAGCATGGTGGGAGTGGCGAGAGTACATCGGCATGGCCAGCATTTCCTTGAACGATCGAGGAAAAGAGACAATGCGATCTTTTCTCCCTCGTCACTCGGGCCCAAGTGCAAGTCATTCCGCTCAATAATGCGCCGTGGCACGGCCGAACAGTGCAAACAAAAAAAGCCTCTCGAGATCGTCTCGAGAGGCTTTGTGGCGATTAGAACGTAATCGAATGTCTGCGGTCTTGGATGTGTTCGCCGGAACGTGTTCGTTCGACATAGTGAAGCTTGTTGTCCGTCATCAATAAAATCGTAGAGCTTCTCGTTCCATAATGATCGCTCCGAATGTAGATCGAAGAGAGGAGACGCTCCCACTGTAGCGGCACGCCGGTGGCAGGCAGCGCATCGTCCGGTGCCGGCTCCGCGTCCTCAAGCAGTTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 33155-32718 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 33154 30 96.7 39 ..............G............... CCAGGATAGCCTAACGTCGTGCTCTCGGATTTGGATCGC 33085 30 100.0 37 .............................. TAAAATGTCGCCCAAGTGTCCCCGCCCGAGGCTGGAT 33018 29 93.3 37 ..........-G.................. AACCATGATTTAAATCCTAATGCTTCATATGTCCATT 32952 30 100.0 36 .............................. GTAATCGTACCTTGGGGCTGCACCATTGAATTTTCC 32886 30 96.7 36 ....T......................... TCGAGGTTGAAAGCGCCGGCTTCAAGTCCAGCCGAA 32820 30 100.0 42 .............................. AAACATAATTTGGGCTACTCGGAAGGTGAACTATTTTTCTTG 32748 30 83.3 0 C.......T..G.....A...........A | A [32731] ========== ====== ====== ====== ============================== ========================================== ================== 7 30 95.7 38 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : GCCGTGGCCGACTGTTCCTACCGTTCGCTGATAGCGATCCGCGCACAGCGGAAATTATGTCCAAGCTGCTACTGCTGGCAGAGGACAGTAAAATTAAAGATCCAAGCATCCTGGCGATGCTATAGCATGCAGAAGAGCGCCCGACAAACGAAGGGCGCTCTTTGTGTATACGAGAGTAGCGATCAGAGAGCCCGCTCCAGTTACACACAACTCGTTTTCCTTACCTTTTGCACCGATTGTCAAAAAAAGAATTGCGAGGGTTTTTCCAATGATTGTATTATTGGAAACTGATCTGTTGTTGTGATCATCTCGGCCTTGGAAAAAGGTGGACGAAGGCCTATAATTTAATTGTGCAATTTGTCGTCGACCCCTAATGCTGCAAAAATACCGGGAGATCGACGACAACGAAAGCAGCGCGGTAGAAGGAATTACGATATTTGCTGTGGTCGATTTGTAGTTCTGGGATATGTAGAAATGGCTTAACGGCAGGATTTTGATGG # Right flank : CTATCCGTTCATCCAATTCCAGATCATTCAGTACTTGGGAAACAAAGAGAATTTGTTTCGCGAAGTTCTAGAATCTAAGTTTCCCACTTCATTACTAATGGAAGAACATTAGATTTGTTCATAAAAAGGAGCCCTGTTTACCAGGTAACTTCTATTGTTAGCATTAGACCCGAATGCAGTTTCGCTCCAGCCATATTTCCAGCTGTTGACGGTTCATAGCTTTTGTAGCCACACGAATCGCAATATCAAATAACTCATCAGGGTCTGCATTCGAATTATAACCATTTTCTAGGATGAATGAAATGATTACAAAGATGGCCGTTTCTTTATTCTCTGCCCGAACGAAAGGCCGCAAAATCTTATATAACCTGAAGAATTCTGTTTTGCTAACGACCATGGAATCATCCCTTTTTTCAGTCATCTTCTGCCGTACCTCCTCGGAGTCCCCGCTTAAAAGGCAGTTATTCAATATAATTATTTTGTTTTCATTTTACCATGCG # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 5 42283-41321 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42282 30 100.0 37 .............................. GCATATCTGAGAGGACGGCTAGCTGAAGCTAAGCAAA 42215 30 100.0 38 .............................. ACGGATATCCCAAACGAAGAGTATCGTTCATTTCCATT 42147 30 100.0 36 .............................. CTGGATACAACAAGGAAGGACTGAAGACCGACCAGG 42081 30 100.0 38 .............................. ATGGCGACTACATTCCCGTATCCGCCGAATCCCGTTCC 42013 30 100.0 35 .............................. TCTTCTGCGAGCGTCGTACCGAAAAGCCTGCGGCG 41948 30 100.0 37 .............................. CTTGGTCCATTGAATGAGTTTGTTTTGATCGATCATT 41881 30 100.0 37 .............................. CTTGGTCCATTGAATGAGTTTGTTTTGATCGATCATT 41814 30 100.0 35 .............................. GCGGAAATGAAGGGCAGAACGGTGGACCTGTTCTC 41749 30 96.7 37 .............T................ CTTGGTTTGGATCTCTTTCCACAAGTGATCCGACCTA 41683 30 100.0 36 .............................. CGGAATTGGAGTGGGCGAAGTACCAAGCTGTCGGAG 41617 30 100.0 35 .............................. TATCCTTCTCGCCACGCTTCCACAAACATGAAAAA 41552 30 96.7 37 ...................A.......... ATCAACCAATTTACGGACCCGGACGGCGACCCGTTAA 41485 30 96.7 35 .................A............ CAAGGTGTCTCTATTCAATTCGAATTTGCTGATGA 41420 30 96.7 38 .........A.................... ATCAGAGGGCGAATCAAATCGAGTGGAAATTGGCATTC 41352 30 100.0 0 .............................. | AG [41343] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.1 37 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : ATGCGTTCTTTCAGTTCTTGCTTTCGGGATGCTCTAAGCATCGGGGAGGGTCACCGCCTTTTTGAAAAAATGACTACGGTCATAAAATGACTTTGGTCATGATTTTACTCTTATTTTTGGTAATGTTCAAGTATCAAAATAGATACGAAGTATTCAAAGCTTGTGGCAAGGTAGAAGTCGAGGCATTTTTGTAATGATTACACATTGGAAAGCTAGCGGTCTGTTTTCTTGAATATTATTAGATGTTAGGGAAAACATTGGGTCTGGGTACTGAAGAAGTGCCGAAAATGGATTAAGCCAAGGTGACCAATGGGGTTGGAAAAAGGTGGACAAAGGCTTATAATTTAACTGTGCTATTTGTCGTCGACCCCCAATGATGCAAAAAAACCGGCGATCGACGACAAGGATAGCTGCGCGGCAAAAGGGATTGCGTCGTTTGCTGTTTTCGATACGTAATTCAGGAATATGTAGAAATGGCTTATTGGCGGGGATTTTTATGG # Right flank : CTATTCGTTCATCCAATTCCAGATCATTCGGCACTTCGGAAACAAAGAGAATTTGTTTCGCGAAGTTCTGGAATCTAGGCTTCCCATTTCTGCTAATGGACGAACTTGGAAGCCTGCTCTTGATGTTAAAAGAAAATAAAGCATTAGACTAGGAAAATAAAGTTGTAGACTGAGAAAATAAAGTTGTAGACTGAGAAAATATAGCATTAGACAGGGAACAGCATTATGCTAACTGGCAGTTATGCGCAACGGGCAGGCCTTAATATATTATTAATTTTTTCCAAACCTCGGATATGATAGGATGAATTTATCCTGTTCGTGGAGGAGGAGTCCCTTTGTCGACCATTTCCAATTTGAAGTCACATATTCCCTATATCGAATTCGGATCTTATCCAGTACGATACGGAAATGCCGTGTATCCGCTTGTAGATAGCGCTCCGACTTTTAGGCGCATCTGCGAAGCGATCGAAAATGCGCAGTATAGTGTCTGGATTTCGATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 6 52415-50939 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 52414 30 100.0 40 .............................. TGCGACGGCAAAGGGCACGGTCGAGGAAATGAAGTCGCTC ATC [52396] 52341 30 100.0 39 .............................. TTTTTTATTTGCGTGGTCGTCAGCGGTCCTATGCTTCCA 52272 30 100.0 37 .............................. TCCTCGTCTTTGGGATCTTTTGGTTGATCCGTGTATG 52205 30 100.0 38 .............................. TTCGATTGAAATATCAAACCTGAACAAGCTTTACCTTT 52137 30 100.0 37 .............................. AGAGGACTATCAACCGTAAACGATGTTTACGCGGGGA 52070 30 100.0 39 .............................. CGGTTTAGGTGGTGGTCTGATGATAGACAAAATGTTGGA 52001 30 100.0 39 .............................. CCGTATTGAGCATGTGGGAGGGGCGACCCTCCCTTCGTT 51932 30 100.0 36 .............................. TACAAATTTCTTCGCATTAATGGATATGATGTTGAC 51866 30 100.0 36 .............................. CGCTAGAAGAGACGTTGAAATATTGGAGAAAGCTAT 51800 30 100.0 37 .............................. ACAGTATCGTAGAGTTTTTTCGCCAGCTCGTAAAGCT 51733 30 100.0 35 .............................. ATCGCTTGATTGATAGTGAGGAGGAAATAGATAAA 51668 30 100.0 36 .............................. CTTGAAGTATATAATGATTTTGGTGGATATGAAACA 51602 26 83.3 34 ......C...----................ GACCGTGTTCAAGTCGCTTCAAACCGCAAACCAA 51542 30 96.7 38 ......C....................... TTTCGTCGTTGTGAACTGGTATGCATTCGATTTTCAAA 51474 30 96.7 37 ......C....................... CGTCATGGGCCGCAAGGTTATGTCGTTGGAAAACGCC 51407 30 100.0 36 .............................. TCCTGAAAATACGCCCTAGTTGGCGTACCCAAGTAT 51341 30 93.3 38 ........AA.................... CCGTAAACATAAGCTTGCCATCTTCATTCACTCCGGCC 51273 30 96.7 35 .G............................ GGGGGAGATTGATCTTGGACAAATTTAAATCTCTC T [51258] 51207 30 96.7 37 ............T................. ATTTGGATGTTTTCCCAAAGCAGGTCGAGGGGGTCCA 51140 30 93.3 38 .....AG....................... TTCACTTCTGATTCATCCTGCATGATCAATATGAAGTC 51072 30 96.7 71 ...............G.............. AACGGTTGTGTGTCAAAGGCGGTACGCATCTCAGCGGTTTAGAACACCTATGGAGGTATTCTGGATCTTGA 50971 30 86.7 0 ....A....A..................GT | AG,A [50945,50964] ========== ====== ====== ====== ============================== ======================================================================= ================== 22 30 97.3 39 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TCATGGGCGAGAAAAGCTACGAGCCGTTCGAGGCTTTGTGGTAGGACCGGGCGTATAATAGCTGATGCCGGAAAGAGGTGATGCTTCTGTTTGCGATCATTGTGTACGATGTCGGGGAGAAACGTGTAGCCCGGGTGCTCAAGACATGCCGGAAATATTTAAACTGGGTCCAAAACTCCGTGCTGGAAGGGGAAATTACGGAGACGAACCTGAAGAAGCTGAAGGCGGAGCTGAATAAAATTATCGAAGACGATGAGGACTCGGTTATTTTCTATACTTGGCGTACCCAGAAGTATTCGGATCGGGAGATCATGGGGTTGGAAAAAGGTAGACAAAGCCTTATAATTTAACTATGCTTTTTGTCGTCGACCTCCAATGCTGGAAAAAAGCCCGGGGGTCGACGACAACGATAGCTGCGCGGCAGAAGGGATTGTGGCGTTACTGTTGGAGATATGAAAGTATGGGGTTTGTAGGAATGGCGTAGTAGTGGGGTTTTTATG # Right flank : TGAGCTATCAATAAAAGCGCACATTCCTCCTTGAATGTACGCTTTAATGAAAACACGGTTTTAGAGTGATGAATAGTATGCTATGATCAGTCCCTTCTCATTTGTTGTTCATCTCTTGTCGAAATCATAAATCTCAGCAAGAATCAGATAAATGATTCCGGCGATTAGAGCGATTATACTGAAAGTGGTTAAATTTCCCCCAACATAATCTAACCATTGTTTGAAAGAATCTGCACCATAAACACTGTTAGGTGATGATGTTGAATAGATCGATGCAGTTAAGTATTTGACTCCTGTAAGAAAAGCAGAAATAGCTATAAGAATAACCCCAGCCGCTCTCCTGCTCATATTCATCACTTCCTTTCCTTATTACGTAATGATACCATAATATTACCAAGAGTCTCCCTTAACGAACGAATGATACCAAATATCAAAATACGTTGATGTAACCATTGGGAAATCCCGAATCTGGTAAACCCCCGTCGTCAATGCCGGTGTGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 62440-63129 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYEP01000006.1 Paenibacillus tyrfis isolate SUK123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62440 30 100.0 35 .............................. CAGCCAGCGCAGCGCCGGAAACACCGAGGGTTTTC 62505 30 100.0 37 .............................. CTATTTGGGCCAGTCTGGGCCGGTCCTGTTCGGTGTT 62572 30 100.0 33 .............................. AGATTAAGGGGAATAGGTTCGCGTATATTTCAA 62635 30 100.0 38 .............................. GAGCAAGTGATCGAGTCGGTAATATATACCAAAAAGGT 62703 30 100.0 40 .............................. CCACTTGTTGAATACAAAGAAACGGTAGAAGTTCTCCGGA 62773 30 96.7 36 ...................A.......... CGGCCAGCGCAGCGCCGGAAACACCAAGGGTTTTCA 62839 30 100.0 34 .............................. TGCATCATTTCGAAACCACTCAGAACAGACGCAA 62903 30 96.7 40 T............................. CCGGCATTGTCACGTACCGGAACCGAGTTGTCATCTTCAA 62973 30 100.0 39 .............................. CCTTCCAGCACATTCATTCGAGGTTCGAGAGCTGCGACT 63042 30 93.3 26 ..........................T..T GCAAAAATGGATAGCGCTTAATTTCT Deletion [63098] 63098 30 83.3 0 ....C...T..C.....AG........... | CG [63112] ========== ====== ====== ====== ============================== ======================================== ================== 11 30 97.3 36 GTTTTGAACGTACCTATGAGGATTTGAAAC # Left flank : CTTAGCTTCATTCCGTTTATCAAACATGCCGTCCTTGTAGCGGATATTGTTCTTGAGATCCATGTCTCTCCTAATTGGACATATCATGATTGAAATTATACTGGCAGCTATAATATAAAAAAACTCGGTAAGGTAAAAAGCTGCTTATTATGGCTTACTCCATTTATGCTAAAAACTCCACGATAGTTTGGTTCGCTTCTAATTTCAGACATGATCGGGGTTCGCTAATTTGACACTCAACAAAGGATTGTGTTATTTATTTCCTTTTAAGTCCATTCAAGCTACAATATGCTACAGGTAAATAATTTTTATAGCTTGGAAAAAAGAAGGCAAATCATTATAATTTAGCTATGTTCATTTTGTCGTCGACCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAGGATAGCCGCGTGGCGAAAAGGATTGTGCGTTAGCAATTGTAAAAACGAAATTTTGGGATATGCAGGAATGGCGTAGTTGCAGGGTTTTTATGG # Right flank : CATTCTTAAACGCTGTTGCGGCTTGTAAAGACAAGAGACCCAAGGCTATCGCTCATGGGTCAATATGGATATTAAGTTGAGTATTTTCGGATAATTGAGTCTAGAGCAACTGCGGCATGTTTAAAGCCGTCGCTTACTCCATTAGCATACATTTTTTCGGCTTCATCCTGTCTCTTTTTAGCCTCAGCATCCCAAATAGTTTGAATATAACTTAGGTCTATAATGAGTTTTTTTAATTCTTGAAACATATCTCCTCCATGTTTTAGGTCTCCAAATATTGACCGTTTGATGTTAAAGTTATTAAGCAATAACTACCGTATTTTTTAAATCGAGGTTCATACTAAGCGTTAAGAGATCAAAAACTTAACAATACAATTAAAAAATGAATGAAAAAGCCAACCCATTTTTTTCTCAGCGGCCCTGGCGAACTACAAATTATATCACCACCCTTGATGCCAACACCTTTAACGTGTCACCAAGTCTATTATATTCCGACCCAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //