Array 1 509119-509451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHD01000002.1 Caballeronia zhejiangensis strain OP-1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 509119 28 100.0 33 ............................ CGAACAAAAATGCAGAAGAGCGAGTGGAGGAAA 509180 28 100.0 33 ............................ GTGCGCCCGAGCCGGGAATCGGCTCATCAAAGA 509241 28 100.0 33 ............................ CGCGACGAAGGACCGGTCTGTACGCATGGCGTG 509302 28 100.0 33 ............................ CGTGCAGCGCTCCCATGTCGTCGAGATACCACC 509363 28 100.0 33 ............................ CATCAGACTCTTGGCAATCTCGCCCGCGTTCTC 509424 28 96.4 0 .A.......................... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGGCATGTGAGTCCGCGGCAGATCGCGGATGTCATCGGGATCGCGCCGAAGCTGCCGGATGGATCGGATGCGACCGCGCCGCGTGCTTCCGGGACGCTGAAGGCGCATTACGCGCCGCGCACGCCGCTTTTGCTGCTGCCGTTCGCGTCGATCGAGCCGTTGCTTCGTAATCGTGACGGGAAGATTGCGCTGGTGGCGCGGGCGTCGAGCGCGGGGGAATGGGCGCGGGCTGCCGATGTTCACTTCGTGGCGGCGCCTGAGGATCCGCAGACTTACGCGCGCGATCTTTATGGCTTGCTGCGGGCGCTGGATCGGGCCAATGTCGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCTGTCAACGATCGGCTTGGCAGGGCGGCGGCGGCGTTCGAGGCGGAAGAGTGATTACTGGACTTTGCGCCTGTTTGTGAAAGATGGGTTTGGGGGATTTTGCTTTCCGGTCAGGAAGTTATGATGCAGG # Right flank : CGTACTAGAACGTCAAACTGGACCGTATCGACGAGTTCCTCCGCCCCGCGGAGCCTTTCTCACCGCAACAAAAAAAACCGCTCGGGCGATCCCTCGCCCGAGCGGTTTTTCCATCCTAAAACCCCAACCCTTACTTCCCCAACCCCGTCGCCGCAATCGTCTGCTCGGCGGCCTGCGCGTACAGCGCATGCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTACGTCTGATCCGCGCCCGCGACCGTCAACGTTTCCGGCGAGCAGAACAGCGACGTCGCGAAATCCTGCGGATTCGGCTCGCCGTACTTCTGCGCGGCCGCGGCCATCGCCTTCAGGTTGCACGCGGTGCCCGTATTCGACACCGTGAAGCCTAACTGCTGATAGTTCGCGGTGATCTGCGCCAGCTTCGGCGGCGTATCGAGGTAGATGACCTTCGACTTGATGTTGAGCGCCTGCAACGTCTGATCGAGCGCAGTATTGAACCCGATCGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 153370-152976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHD01000013.1 Caballeronia zhejiangensis strain OP-1 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153369 28 100.0 33 ............................ TTTGAAGCGGCCCACCGTCCTTACCTTTTCGGC 153308 28 96.4 33 ........T................... GTTGAAGCGCTTGATATTGTTGGATCAGTACCG 153247 28 100.0 33 ............................ CTTCGATCCTCTTTTTGCCGCGCTCGGCATTCG 153186 28 100.0 33 ............................ CTACGAAAAGCGCGCGCTGGAATTCGTCCGAGA 153125 28 96.4 33 .........................G.. CGGATTCCGCGATCTGTGTTTACTCGCGCGAAA 153064 28 89.3 33 .......G.....G....A......... CGACCTTACGAACCGCGCACGGCTCGATCTTCG 153003 28 78.6 0 T..........CCT..........TC.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 94.4 33 GGTTCCTCCGCGTCCGCGGAGATAGACC # Left flank : CTTTACCAACGTCATGCAGATAAGTAAGCGCGGCAAGCCGCTCGATGTCCTGCTCGCTCAATGCTCGGCCAGCGGTCGACGTCAAAGCATCGCGGATTCGTCCGCACCGCGCAATTGCCATGAAACATGCGGCCACATCCAGCATGTGATCGCATAGCGGATGAAATGGCGAGTGCTCGTCGCCGTCGCGCGGCCGCTTGCCCCACGCGATGCAGGTATCGTTTTTGGTGGCCTCGGTTTGCATGTGCTGCCGATAAGTATTTTTTGCGCGTTCGTGATTTATTTTGGATACCTATCTTTTACGGAAGATTTGCTTCCGCCGCCATACGAATTGGCTTAATTCTTTGCTGCGCGACCGAACAGCGTTACCGCAGAACATTCCGTTCGAAAATCCGACGTTTGACAGCAGCAGGACTGATAGCCATACTCTCCGCGGCACGGTCGGTTCGAGACAACGAATCGGTCGTTTGTTTTTTCAAATCATGAAGATTGTGTGTAGA # Right flank : CATGCCGAACAACTACGGCAAAAACATCAAAGTCATTCCTCCGCCCCCGCGGAGCTTCAACTCCCCCCAAACCTCCCCCTAGCCGCCTCCACCACCCTAACCACCGCCTCCGCGCTCAACCGCGCCGCCACGACCCTCACATACTCATGATGCCTGGCCTCTAACGGCGCATCGAGATACTGCGCATGCAGATACCGAATCAACGCAATCCGCCGATGCTTCAGCGCGATACTTCGATCCAGCAGCTTAAGCGCCGCATCCGCATCATGCTTCTTGCATGCACGTTCGGAGAGCTGCGCAGCCGAATCACGCGACGCGTTCATCGCCGGACTACAGCCGCATCCCACGCATCGACGCGCGACCGCCAAGCATCGAAATCCGCCCGACGCCAGTCGAGTTCAAGCCCAAGCCGCTTCGTGCCCTCACGAATCTTCGGCTTGTGCAGCACCAAAGTAAGCGCATCCAGCGCCGGCCACTCTTCGAACGACAACGCGGCGATC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTCCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 162470-163168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHD01000013.1 Caballeronia zhejiangensis strain OP-1 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162470 28 100.0 33 ............................ CAAAGGGAGCGACGCCGCTCGCCCATTCCCAAA 162531 28 100.0 33 ............................ CCAGAGGCGCGACCCAATCAAGTGCAGCGGGTC 162592 28 100.0 33 ............................ CCTGTGCCGGGTGAAGGTCCGGTCTCTGTTCCC 162653 28 100.0 33 ............................ TCAACAGGGCTGCGTCAGGAAGCTGTTTCGGAG 162714 28 100.0 33 ............................ CTATGAAGCGATTATTGAAGGCTTTATCGAAAT 162775 28 100.0 33 ............................ TCTGGTTGCACTTGCGCGTCATCACGACTTGGC 162836 28 100.0 33 ............................ TTGCCGTATTCATACATCGGTTCAGGCCGCGCA 162897 28 100.0 33 ............................ GCCAGGTAAGGCTGCCGACGGTGCAACCCAGAA 162958 28 96.4 33 .....A...................... CTTTCCCGGCAAGACGACGCCGGCCGCAGTCGC 163019 28 96.4 33 ...........C................ GCGCAGGGAAGCCGATCCGGATCTCTTCGAAGC 163080 28 85.7 33 ...........T.A....C......C.. GTCGCCGACTCCCGGCTGCTGCACGATCAGATC 163141 28 71.4 0 .T.........C.AA......C.CCC.. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.8 33 GGTTCCTCCGCGCGCGCGGAGATAGACC # Left flank : GACTCGTGCGGCGCGAGGCGGCGCGCGTCTTTCGGAAGAAGGCTGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTGCTGCGTCTGGATGAGACGCTGGAGGACAACGATGGCGCTGGTCGTGGTGGTGACGTCTGACGTCGCGGACCGGTTTCGCGGGTTTCTGGCGTCGGTGATGCTGGAGGTGTCGGCGGGTGTCTATGTGGCGCCGCGCATGAACAAGGGCGTTCGCGAGAGAACGTGGTCGGTGCTTGCCGAGTGGCATGGACATGAGCCGCGCGGTAGCGTCGTGATGGTTTGGCGGGATTTGGATGCGGCCGGCGGCATCGGGATCGCGCATCTTGGTGAGCCGCCGCGCGAGCTTGTCGATGTTGATGGGATGTATGTCGTGCGGCGGATGTTGGCGGGGTAGGGGCGTTTTGTTCTTTGAAAATTGGGGAGGTGAGACTGGATCGGTTTGGGGGATTCCTCTTTGGGATCATGGTGTTACGAGGCAGA # Right flank : CTCAAACCCCCACCAACCCCCCCACCACCTCCCGCGCCCGTTTCCCCCGCGCCACAAAATAAGCCGTCTCCGCCCGCCCCAACGCAGCAACGCCTCTAATCCGATCCGCAATCTTCTCCGCCAACATGATCGTCGGCGCATTGAGATTCCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAATCCTTCCATCCCATGCACGCGTCCTTCGCCGTCGACGACAGCCATATCGTCATAACCCATCTTGCACGAGCACGAAGGGTGAAAAGCCGTCTCCGCCTTCGCCCTCACGAACGCATCGAGTTCCGCATCGCTTTGCAGATCATCCGACGGATGCAACTCCCGCCCGCGATATCGCGCGAGCGCGGGCTGCCGCATGATCTCGCGCGTAATCCGAATGGCATCGCGAAACTCGCGCCAGTCGAGCGGATCGGCCATGTAGTTGAAAAGAATGCTCGGATGCGCGTTCGGATCGCGCGACTTGAGCTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGCGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //