Array 1 73372-74950 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000014.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 73372 37 100.0 37 ..................................... TGGAAGATCAGTTTGGTTCTGATGGAAACGTTGTAGG 73446 37 100.0 36 ..................................... TCATGCAAGATGGCGCTTGATGTGCGATATTTGTCA 73519 37 100.0 36 ..................................... GCTCCGCTGGCACACGTGCCATGATGACCATGCCGC 73592 37 100.0 37 ..................................... TCCTGGCCAATCTGCACTTTTGCCACCACTTTGCCGC 73666 37 100.0 36 ..................................... CTCCCCGCAAGTTGCGCCGCTTGCATGTTCTGCAAG 73739 37 100.0 36 ..................................... GTGCCGGCGAGGCCGAAAGCCGACAGGGGCGCGGGA 73812 37 100.0 38 ..................................... GGTCAGATCTTCCTCATGCAGCCGCTGCTGCACGACAA 73887 37 100.0 37 ..................................... CCTCTGCCGGTGCCGGTGCCGGTGCCGGTGCCGGCGC 73961 37 100.0 36 ..................................... GCTCCCCGCAAGTTGCGCCGCTTGCATGTTCTGCAA 74034 37 100.0 35 ..................................... GGCGAGAAAACGGAGCCGCTGTTGCAGCAAGATAC 74106 37 100.0 35 ..................................... GTCAATTCTGGGTTCTCTTTGGATATAATACCAAT 74178 37 100.0 39 ..................................... TTTCGATCTTCGTGTGTGGAGTTGTTTGAGGTGACGTGA 74254 37 100.0 38 ..................................... CTTTGAGCCGCATAACTACCGGAAATACTACTTGTTGA 74329 37 100.0 36 ..................................... CGTTGAAGAAATCGGCAGCCGCGTTGTCTCTTCATA 74402 37 100.0 35 ..................................... TGGGGCAGGGCGAAGGACACGCCCCAGCTGCTGGA 74474 37 100.0 36 ..................................... CCTGGCTCTTGGACAGGAGAAGGAGGAACAGATCGC 74547 37 100.0 36 ..................................... TTCTTTATCTTGCCTCTCTTAGCGTCTTCTTCCAAA 74620 37 100.0 36 ..................................... AATTCACTGCAGCGGGCCATCAGCAATGATCAGCCA 74693 37 100.0 37 ..................................... GAGGAAGATGAGTTTCTCGACGGGGACTGGCTCACAA 74767 37 100.0 37 ..................................... GAGGAAGATGAGTTTCTCGACGGGGACTGGCTCACAA 74841 37 100.0 36 ..................................... GTTGTTGTTCCATCCAGGCTGATGCCTCCTTTCTTG 74914 37 91.9 0 .......G...A.....................G... | ========== ====== ====== ====== ===================================== ======================================= ================== 22 37 99.6 36 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : TCTCTTTGTCTGGCTGGCTGGCTGTTCTCCTCGGTTGCGGTCACCCGCGCGTCGCGCTCTTCGTCGCCGGCTCCACGGGCTGTCTGGCGCAGGGGCCTGGTTTGGTCGGCGCGGGTCGCCTGCGGACTGGTCTGGGCTGTGGGCCGGTAGGTGGGGTGTGAGGTGGGAAAGTGGGATGGGGTCGCCAGATCCCCCGCGTGATGGCCTCTGTGAGGGCCGCTTTCGAAACTCTCCACGGGCCGCTCAGAAATACGGTGGATTCTGACCGTATTTTGACGAATCTGTACATGTAATGCTTGTAGAATATGCCTATGTTTATTCGTGCTTTCTCGAAACTCGCCCCTTGCGCGTTGCAAAAAACGAGTTTCGAGAAAGGTCGTAATCCGATAGATTTTTGGGCAGGGGGGCAGGGGAAAACGAGGCTCTCAGCGCCAAAAAATGGGGCCTCGATCGTTATAGTCTATGAAAGATGTATCCCGGGTCCGTTTCCGTTGGGCGCG # Right flank : GAAAGAAAAGGAGGATACTGAAAAGAGATAAAGAAAGTAAAAAAAAGAGGCACAATATATAAAAAGAATAGCGTATTGCCCCGGGCATCGCCCCCCGACTAGCCCGGCGACAATACACTACATTCCTACAAAACGGCCCTTTCCTCCACTTTGGCGGATACCCACCCACCTCACTCCTTCACTCGCACCATCATCCCCCAAAAAAGAGAGCCGGAGCCGCGCCCCAGCTCGTCACCTGGCACGCGCTCCGACTCCCCAACGGACCAAGTACAGAGCGAAACTCGGATAGAGAGAGCTCGGGTACGTTAGGGAAATGGTATCTTGCTCAAACGCTGACTCCTGACCCAACGCCCTAAGCGCGCCGCTCCCGCTGAGACTGAGGCTGATGAGGCCACCGCTCCCACGCTCAGAGGCCGCGTCTGCACCTGCTCCACCTGCTCCGCTCCTCGCTCGCCTTCCTCGCCTGCAGCGTCAGCCCCCAGTGCGCTCCCTCCTCTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 11889-11031 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000023.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 11888 37 100.0 39 ..................................... CCTGTGGTTTTGGCTTTGGTTTTGGTTCTGTTCTCTTGG 11812 37 100.0 41 ..................................... TTTCCCCCATCTTCCTGGAGTTCCTGGATGCCATGCACAAA 11734 37 100.0 36 ..................................... GTTCTAGCAAAGCTGCCTGTACCAAAGCCTTCATCC 11661 37 100.0 36 ..................................... CTGGGACGGCTACGGCTAGCCCGCCGGGCCAGGTCA 11588 37 100.0 39 ..................................... TTATGGACGGATGGAGCATTACTGGTATGTGAGCGCGGC 11512 37 100.0 37 ..................................... CTAGCTGACCTCTCTCCCAGACAATAAAGCCGTCGTC 11438 37 100.0 35 ..................................... GCTAGAGTAGTACCATGCCTCAATAGAATAAGTAG 11366 37 100.0 39 ..................................... CTAACTCTTCTTCCGAATCGACAAACTCATTATCTTCGT 11290 37 100.0 37 ..................................... CTTGATCTATTTCATGTATGAAGAGACTATCTGTATG 11216 37 97.3 39 .......G............................. GTCCAATACCCCACGCACATGGCGTGGCGGATCTTCCGG 11140 37 100.0 36 ..................................... TCCAAAATTGCAATCTGCTCCTCAGATGGCATTAAA 11067 37 86.5 0 .......G............AAG.............C | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 98.6 38 GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Left flank : CCTCTCCGGCGGAGCCCCCACTCCGCCGGAGAGGCCGGTGGGTGCAGCCTTCCAGTAACCAGAAGGATTACTTATATTGTACGTGATGCTCCAAATATATGTTTGTCGATATAGAGCCGCTGCTGATAGCGCTGCTCGCTGGCCGACGACCTGGGGTGCGCTGGTTGTGGGAAGGGTGCACTGAGGCAATCTTCGGCTCATGTGGCCCTTGCGCGGGGCCGCTTCGAAACCCGGCGAGTGCTCCCGGGAAATGCGGTCAGATTCTGACCGCATTGACCTCTGGACGTGGCACTTCTGCCTGTGGTATACTCGAAAATGCAATGCTGCCTCTTCGAAACTCGCCCCTTGCGGTTTGCAGAAGACGAGTTTCGAGAAAGGTCGTGGGACGATATATTTTGAGAGGGGGAGGGAGAGAAAAACGAGCCTCTCAGACGCCAAAAACGGGGCCTCAATCGTTCGTGGATGGTGAAACACTATCCCTGACCTCTTTCCGCCGCCCG # Right flank : GCGATACGTGGTATACTACAAGATAGTGAGAAGTGAGAGGCAATACTGATTTGACTGGCACACACGCGGATCGTTGTCCGCTCCTGACCGCCTGGCCGCTCCCGTGGCCATAACCAGGACTGGGCCAGACGACGCTACGCTGCCCTGCCTTGCTCTGGCCAATAGCCCAGGCTCCAGGCTGCTCCATCCTACACGCTCGCGCAACTGAAACGACAGCTGAGCAGCTCAGCCAGCAGCCACCAGGAGAGGAGACGATGGTGAACCAGGCTCTGCCCCTCTCGTTCGCCGGCTAACTGCCTCGGGCAGCGCCAGCCAGCCGCCTCTGTCCGCCTGCCTCTCAGCTGCCTCTCTATCTATCTCTGTCTATCTATCTGGCTGTGCTCGTATGCGAGGCCGGGGAGGGCTTTCGTCTATGACACGCGATCAGGGGCCTGGCGAGGATGGGCGGCAACAGGAGGGAACAGGCAGCCGCATCGGCAATTATCGCTTGCTGCGCCGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 76314-77751 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000029.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 76314 37 100.0 37 ..................................... GTCAACGCAAGCGCTGGCGACGTCCAGGTTCCAGTTG 76388 37 100.0 38 ..................................... AATGAACAGGGCAAGAGCAAGAGCAAAAAGAGAAGGAG 76463 37 100.0 37 ..................................... CTTCTGGAGGAGATTGGCCGAAAGAATGGAGCGGAAG 76537 37 100.0 37 ..................................... ACCGGAACGATGGCCCGGGCTAAATCATCGTGACTCG 76611 37 100.0 38 ..................................... AGTTGTTGGTGATGAGACGTGTCATTGCTCTTCTTTTG 76686 37 100.0 37 ..................................... CTGGCTTTTTGTATCCGCTTCTCTGCTTTGCTGGATG 76760 37 100.0 36 ..................................... AGCTCAACAATGCGAGCCGGCTTCTGGAGTCACTAC 76833 37 100.0 38 ..................................... TACCATCCTGGTCAATGGAGTCCCCCAAACTGTAGGGA 76908 37 100.0 36 ..................................... CTCGGGTGATGCCAAGGGCTTGGCAGACTCGGATAA 76981 37 100.0 36 ..................................... ATGCCAGGCTCACCGGCTGCTTCGCGTCCAGCTCGA 77054 37 100.0 37 ..................................... GTTGCAATGCTACCCGCGTTGCCTGCTGCTGTGGGGA 77128 37 100.0 37 ..................................... GCTGGTCATGCCGCTCTGGCAAGCAGGGACACGGGAA 77202 37 100.0 35 ..................................... GATCAACCCCCGGCGCAATGAGGCGACGGATCAGA 77274 37 100.0 35 ..................................... TGTAGAGCCGCGCGAGCCAGTCTGGCCGGCTCTCG 77346 37 100.0 37 ..................................... CTTAATTCATTCTCGTATGATCCATCCGTCGCTTTTG 77420 37 100.0 37 ..................................... ACAAGTGGCTTTGGAAATTCCGAAGAAATTTTCCCAA 77494 37 100.0 35 ..................................... AGGCCACGGGGGCAGAGACTCGGGTGACCGGACAA 77566 37 100.0 36 ..................................... CGTCCCTTTTCCTGTCTGAGCACCAGGTCAAGCAAC 77639 37 100.0 39 ..................................... CAGGTAGATACCCATACCTCACTTGCTATCATATGCAAC 77715 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 100.0 37 GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Left flank : TCTGGACCTGGTAGCCGGCGCGGCTGAGCGCCGCGCGCAGCACCGTCCGCCAGACCGCGAGGATGGCTTTCCTTGCCTCCTCATTTTGCGGCTCCTCGTTCCCAGGATGTACGCGAGCGCACGGGCAGGGTCAGGCCCGCGAGCTTTTTTGTTTTTGGGGAGGAGAGAAGAGAGGGAGGAAAGGGAGCCTGGCCAAAAAATGGCCCCTCTGAGAGGCCGATTCGAAACTCGCCGCGGCTATCACCCCAATGCGGTCAGATTCTGACCGCTTTTGGCCAGAATCGCACATCTTCTGCTGCTTTTCTGATAAGAAATCTGTTGGTGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAACAACGAGTTTCGAGAAAGGTCGTGATACGATAGATGTTGGTAGCTGGGGAAGGGGAAAAACGAGGCGCTCAGATGCCAAAAATGGGGCCTCGATCGTTATAGAATAAGTGAGAAGTATCCCCAATGCTCTTCCGCCGGCTGCG # Right flank : TTTGCACATCATTGGCGCAGTAGTGCACGCAATCGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 63662-64955 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000031.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 63662 37 100.0 37 ..................................... CTTTGAACTGTCTGCTTTCTTTTGAATACAAGCACGG 63736 37 100.0 37 ..................................... TCGCGCTATTTTATATCGCTTTGTGCATTATTTGCTG 63810 37 100.0 36 ..................................... ATGGCTACAGCGGCGAGAGCCGGCCAGGCTGGCTCG 63883 37 100.0 35 ..................................... TGCGAGATCTCCCGGCACAGTACCAGCCGGAGGGC 63955 37 100.0 36 ..................................... GCTGCAACATGGCACAATGTGGGCACGCAAAGCCAA 64028 37 100.0 36 ..................................... TCGACAGTCGCAAGGAAGCTACGAAAGGAAGGGTGA 64101 37 100.0 36 ..................................... ACGCGGTATCGCGGCTTGCGAGCGGCCAGTCCGTTT 64174 37 100.0 39 ..................................... ATAAAGCGGTCAGCTCATCTTCCGGCTACCGGACGGTCA 64250 37 100.0 35 ..................................... GTTCTGGCGGTACTGGACGATGGGGCAAATATCAT 64322 37 100.0 37 ..................................... GGTCTTTGGCGGGAGTGCTGCGGGAACCCTGGGGTTC 64396 37 100.0 40 ..................................... ACGTATGAAGATGAACATATACAACAACAATGCTTAGCAA 64473 37 100.0 36 ..................................... GTGCTGTTAAGTACGTTTCTGAGAACAGGAAAACTA 64546 37 100.0 36 ..................................... GTGCTCGCCACATAATGCCGCTGCAATGCCATGTGG 64619 37 97.3 36 .............A....................... AACTATTTCGAAGTAGCTGACGCCGTTGGCAGTGGC 64692 37 97.3 38 .............A....................... GCAAGAAGATTTATTTCTCGCGTTCCGGTACAGGCCAG 64767 37 97.3 38 .............A....................... ATGACGAAGCTCTAGATGCTGTGTCGCTCTATAGCCGG 64842 37 97.3 40 .............A....................... CGTTCCGGTTGCCAGCGCAGGGTCGACGTCCGGGCACTGA 64919 37 94.6 0 .............A......................C | ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 99.1 37 GTTGCAGGGGAGTCGATCCGCACGAGGATACTGAAAG # Left flank : CCGCTGTAGCTGAGACGATAGGCCCGGTGTCAAGGCAAGGGGGATTACGGTGGATGCACCTCTGATGCTGTTTGCCGTTGATGGCTGGACTGACTGGGCGGGGGCAGATGAGAGCGGATAGCCTGGCTCTCTGCTGCTCCCGCCTTCATTGTGACTGACTGGCTGAACTGACTGGGAGAGGGTCGAGGGTGGGCGTGAAAAGGCCCTTTTGAGGGGCTGATTCGAAACTCTCCGGGCTCTCCCCGGAAATGCGGTCAGAATCTGACCGCATTTCCCTGGGAGCATGCATCTTTTGCTGCTTTTATTATTGAAAGTATGTTGATGCTCTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATACGATAGATTTTGGCAGGTGGGAGGAGAAGAAAATGAGGCTCTCAGAAGCCAAAAACGGGGCCTCGATCGTTATAGAATAGGTGAGAAGTATCCCTGATGCTCCTCCGCTGCCTGCG # Right flank : CACAAGGGTACTGAAAGAAAGCATGAAAAAAAAGCGGCGCCCGCGGGTAAATCCCACGAGCGCCGTTAGCCGTTTGCGGTCACAGCCTACCTGGAGCCGGACATGGCACTATGAACCTCCTGCGCCACTCCCGGCAGATCGTGACGCAGCTCGTAGTCACTTACCAGACAAACCCTCGGTCCAAGCTCCTGCAAGGGATGTCCGGTTTGCTTATAGTCTTGCTCAACAGGATAAGTACCGACAGCGAGCAGGTTGCCATCCTCGTCCTTCGCAAGCAACGGCACTAACTGACCCGCCAGCCAGTCCGGCTGATGACAGTCGTAGCCCTGCAGCGTCAGAAACTGAGCCAGGCCCTCAAGCTGTCGCCTCTGCTCCTCCAGGGAGAAGGCCGCCGGCGCTCGCTGCTCGACAATCGCCTGCAGCAGGCGCCGGCCAAGATGACGGTCGAGGCGATAGTGCAGCATGCGGTTGCCATAGTTGCGCAAACAACGATAACAGGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGGGAGTCGATCCGCACGAGGATACTGAAAG # Alternate repeat : GTTGCAGGGGAGTAGATCCGCACGAGGATACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 75728-76352 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000031.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 75728 37 100.0 35 ..................................... CTTGGGCGTCGAGATGAACACTGCACGGCCATTGG 75800 37 100.0 38 ..................................... GACCAATGAGAATCGCGCGTAAGAGATCACCGTGACTG 75875 37 100.0 39 ..................................... AGAATACAAATCCGTCTTCTTCAGCAGCATCTTCTGTGG 75951 37 100.0 35 ..................................... CAAAGTAGCCACATGCGAAGTACGTGTACTTCGGC 76023 37 100.0 38 ..................................... TTCTATGGCCGGGGTTACCCCCCATTTTCGACAGCTCA 76098 37 100.0 34 ..................................... CCTTGCTCCTGTCAGGTTGGTTGGTAGGATTAGA 76169 37 100.0 36 ..................................... CACGCTGCTGGATCTGCCGCAAGAAGCGGGCGCGCG 76242 37 100.0 37 ..................................... AACACCTCGGCCAGGAGACGCAACGAGCGCTTTGGCC 76316 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 37 GTGGCAGGGGACTCGATCCGCTAGAGGATACTGAAAG # Left flank : GGCATCCGACGGCACGCATGCGTCTGCTCCAGATGCTTTTTCATGTCTACGGCGTTGATGAGGTGCAAAGAGCGCTGGCTCATCAGGTGTGATCTGCATTGAGGAGCGCCTGTTTGCAGCGCGGGCCGGCGGCTGGTCCGCGAGCTTTTTGTTTTTGGGGAGGAGAGAAGAGAGGGAGGAAAGGGAGCCTGGCCAAAAAATGGCCCATTTGAGAGGCCGATTCGAAACGCTCCCGCGGGTGCCCCCCAATCCGGTCAGATTCCGGCCACTTTTGGCCGGAATCTCGCACCTTTTGCTGTTTTTATAACCGAACATATATTGGTGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAACAACGAGGTTCGAGAAAGGTCGTGATACGATAGATGTTGGTAGCTGGGGAAGGGAAAAAACGAGGCGTTCAGATGCCAAAAATGGGGCCTCGATCGTTCTAGAATAAGTGAGAAGTATCCCCGATGCTCTTCCGCCGGCTGCG # Right flank : ATTGCAGTTGCAGGGTCGTGCTCAATGCATCAACTGTGGCAGGGGACTCGATCCGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGACTCGATCCGCTAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 63358-62213 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000036.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 63357 37 100.0 36 ..................................... CCCCAAAAGAAAGGGGGAAAGAAGGGGAAAAAGGAG 63284 37 100.0 36 ..................................... ATGCCATCCGTTCCGATTCAGCCAGGCCGCTAACTC 63211 37 100.0 37 ..................................... CTTTTAAGAAGAACGGCATCGTGTCAAGAGTCACTCA 63137 37 100.0 36 ..................................... GGACAATAGCAAACAATCGCAAACACTTTACAACAC 63064 37 100.0 38 ..................................... AAAAACCGCCTCACGCAAACAAAAGCATTTTGAGCCGC 62989 37 94.6 35 .....................CT.............. TACCAACCCGGTCTATATCGGCGTTTTCCAGCGTC 62917 37 100.0 38 ..................................... GTGTGCATGTCATTGCGCGGCGGTTGGTTTCTGGGGGA 62842 37 100.0 37 ..................................... GATCCAGCATGACCATCATCGCCTGGCGCTCTTAAGA 62768 37 100.0 37 ..................................... CTGCAGGGCTATGGAAGCCCAGAAACCGCGTGACCTG 62694 37 97.3 41 ................A.................... GCTCTGGATTCTCCGCATGACCGATCCACCGAGCCGCATTA 62616 37 97.3 37 ................A.................... CTGCAGGGCTATGGAAGCCCAGAAACCGCGTGACCTG 62542 37 94.6 38 ................A........A........... TGCAGTGAGGGCAACATGCGCATTGCTGACGGGTAGGC 62467 37 100.0 35 ..................................... AGAACTGCTTGAGGCCCAGAGGAGGTCTCTTAGCA 62395 37 100.0 36 ..................................... ACTTAAAGGAAGCATCTACTTGCTGGCTGCAGAAAT 62322 37 94.6 35 ..................T.T................ GTCTTGCTCGTATTCCAGATAGTACAGGTTGTGAC C [62299] 62249 37 89.2 0 A...............C................G..T | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 98.0 37 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : TGTATCATTGGGCAAGCCATGCGCACGTAGGGCAT # Right flank : GAGGTATGCTGAACAGCTGATTAAAGAGGATGCTCAGAGAAGGGCGAGAGATCACTGACTGCACATAGCCATTGGCTAAAGCACAGATGTCTGTAATGGTGGATAGCACTGATCCCTGGCTGGCCGGCAGACGAGAGGCCAGCCATCAGCTTCCCTTAGCGCTCGCAGCGCCCGCCGGCCAAATAGTTTACGCTTCAAACTCCTCAAGAAGGTCCTCGCGTCCCTGCTCTCGCGCAAAATCTACCAGCTCCGGCCAATCCGGCACCGGCACCGCCAGACGCTTACAAATATGCCCCATTACCTGAAGCAAGGACCCGCGGAAAAGCGGCTGTCTCCGACGCTGCTCGCGCTCAACAAAGAGCAGCGTCTGCTCCAGAGCACTACGGCGCCGCAGCTGCTCGTCCTTACACCAGAGCTGGAAAAAATACCCATTCTCCTGACGCACATTGCCCACATCGCTCGGGCGCAAAGGCTGCCGCTCGCCTGTGCTGGCCGCCTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 35-445 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000039.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 100.0 37 ..................................... AAACTCAAGATTTGCTTTGGCTGCAATGTCGAAATCG 109 37 100.0 38 ..................................... TGGCCGAAAAGCATTCTTTCCATAGCAGCGGTGGGGAA 184 37 100.0 41 ..................................... GAGATGCGTAACACGCGCCGCCACTGCGTCGCCGGCAGCAA 262 37 100.0 35 ..................................... CTGCTCTGCGTATTTTTCCACGAGCCGCTTCACGA 334 37 97.3 38 ........................C............ GCGGTAAACGGAATGGTACCGGTCTTGTTACGCTACAG 409 37 86.5 0 ......A...C.........T...G....T....... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 97.3 38 GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Left flank : AACCAGCTCCAAACACCACAAACATCACCTCACGG # Right flank : GGTCGTCGATACCGCAAAACAAGCAATAAAAACGCGAAGGAGGTTTTCCCTCCCCCGCGCCTGCAGTCAAGCAATCACAACAAGGAGCCTGCCGCCCAGGCAGCCGAGCCAGGACCTGGTCAGTCGCGACACCACACCCCAACCACAGCCCAGCAACCTCAGCCCACCGCCCGCCTGAGTAGCTCCCTGATCCGCTCCTCCTCAGACGGCCCCAGCGCCGTCAGCGCATAGGCCGTCGGCCACATCTGTCCCTCATCCAGATGAGCCACATCGTTGAAACCCAGCGTCGCATAGCGCGTCTTGAACTTCTGCGCCGGCTGGAAAAAGCAGACGATCTTGCCATCCCGCGCATAAGCCGGCATCCCATACCACGTACGCGGCGCCAGCTCTGGTACACACTCCTTCACCAGCTCGTGCAAGCGCAGTGCCAGACTGCGATCCGGCTCGCTCAGCTCGGCAATCTTCGCCAGTACCTCCTGCTCGCCCTGCTCCCGATCCTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 592-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000006.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 591 37 100.0 38 ..................................... TGGACTGTGGGATGAGGCGAATCGGCTCTATCGTCTGG 516 37 100.0 37 ..................................... CTTATTCCCTTGAGGCCATCCAGGAAGACTCTGGCAT 442 37 100.0 36 ..................................... ATGATGCGAGAGGGGCCGGTCTCACCATTGAGGTGG 369 37 100.0 37 ..................................... CCCCGGAGATTGTCCGGGTGGCAGCAGCTATTTTCCG 295 37 100.0 35 ..................................... TCAGGTGGCCAATCGCTATGCCAGTGAAGGACACC 223 37 100.0 38 ..................................... GATAACGGCTCGCCACTGCTCATCAGAACGGTGCGTTT 148 37 100.0 36 ..................................... ATTGGAGCAGCTAATGGCGAGGTCCCTCCCTGACTA 75 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 37 GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Left flank : GTCGCCCTCATCCCTCCACCTGGAAGCCGGCTCCTGCCTGTCTTCCCCAGCGCATGGTCCGACCCCGTGGCTCTACGGTCCCAGCACTCAGGATGCTGTTGGCAGAGGGAGCCTGCTGCCATGCCATCCGCAGGGGGGAGCGTTTCATGGGAGCGAATAGCTCACCACCGTGGCTGCAGGGACAAACCCTGGCGGGGAGCTGACTCGGGAGGACCGCTCAGCGGCATCTCCTGCGGGCGGGCTGTGCCATGCTGCTGCCCTCCATGCTGCTCTTACTGCAAGGAATAGTTCTTGCTGCTCTCGCTGCCCAGGCTCGTCGCTTCGAGCATCTCGGCACCCGGCGTTCCACGCAGCGATGCTCGAAGGACCTCACCAGCCGCTGCAGGGCCACAGCGGCTGGTATCATGACCGCACAACAGCGGTCACTGCTGACCGCTTTTTTGGGATGCTCGAAACGGCTTGACGGAGACAGCTCCTGATGCTATCCTGAAGGAGGGGCT # Right flank : CTCGGATCGAATTGGTCTTGTCCCATCCCTATGGGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 18067-16762 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000074.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 18066 37 100.0 37 ..................................... AAAACCTACTTCACCCAGATCGATGATCATCACTGGA 17992 37 100.0 35 ..................................... GAATCAGCAGGGCCGCCCAGGCCGTGATCCACGAG 17920 37 100.0 40 ..................................... CTCTTTGTATCTTTGTCGATGGTCACGGTTGCTGTCATGA 17843 37 100.0 37 ..................................... AAAGCGGACCTCGCCACATGGCTCCTTGGAAATCTCC 17769 37 100.0 37 ..................................... AAAGCGGACCTCGCCACATGGCTCCTTGGAAATCTCC 17695 37 100.0 39 ..................................... ATTCAACCGTGTTGCTTGACCTGGTGCTCAGACAGGAAA 17619 37 100.0 34 ..................................... CCAGGTAAGGTATCCAGATACGGATGATAGGAGA 17548 37 100.0 43 ..................................... CGTCAAAGGGGACATCTCGGTCATTCGCAAAATCAACGACAAA 17468 37 100.0 38 ..................................... TTCAACTGCTCTCGATACAGCATCTGACCCTACTTCTT 17393 37 100.0 36 ..................................... GAAGTGATGTCGCTTCCCATGAGGCCGGTCATCCGA 17320 37 100.0 37 ..................................... CACATTAAAGATGAGGAGATAGGATCGACCCGAGAAG 17246 37 100.0 39 ..................................... CAGGGGCGCAAGCATCGCGCCATCGGAGTCCTATGCACG 17170 37 97.3 35 .........................T........... AGCCGCATTAGAAGACGCGGCGAAACTTGCCGGAC 17098 37 97.3 35 ......................T.............. CTCTTGGCCATACTGCAGCAAGCCAACCATGAGTA 17026 37 97.3 35 ......................T.............. CTCTTGGCCATACTGCAGCAAGCCAACCATGAGTA 16954 37 97.3 47 ......................T.............. CGAAGCTGCCGATTGTGTCCAGCAACACCAGCTGTGAGGGATGTTGT 16870 36 75.7 37 .....GTG...G-.C.C........T...G....... CAATCGATCTCGTCCTCATCCCTGAAGAGCCGATCGC 16797 36 78.4 0 ............GC..CT....-..T...G......G | ========== ====== ====== ====== ===================================== =============================================== ================== 18 37 96.8 38 GTCAGAATGCTTATTTAGCCCGCTCGGGGATTGAAAC # Left flank : CGCTGGGGGCTTCGTGTCCGTTGCCGAGGGAGGGCGAGAGTGCGACGAGGTCGTCGTTGGCAGTGGGCAGCTTGACCTCAACGCCGACGGCGGGTCTGGCCGAAGGCGCCGGGGTCTGAATCTCTTCCCCTTGTGTGCCCAGGCCAGACCAGGATCGGGCTTCGTAGGCCGGCGTCCTGGCGTGCGGGCTGGCGCTGGAGGCCGGGACTGGCCAGTCGTTGGGCGCGAGTCGGCGCCGGCGTAGCTCCTCTCCGTTGAAGCTGCTCCTTCGGCTGCTGGCGAGGACGAACGTGCCTCTTTTTGCCGCTCATGCTGTTCGCTTCGAGGATCGCAGTGCCCGGGTTTTCATGCAGCGATGCTCGAATGGCTTGGCAGGCCGCGTCATGGCCAGAGTGGCTGGCATCATGACCGCGCAACAGCGGTCACTGATGACCGTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGGCCGCCTGCGATGCTATTCTAGAGAGGGTACC # Right flank : CACTCGGGACCCTGGCTTATGTAAGGAACAAAATGCCTCCTGCGCCTGCCTGGCTTTGCAACCGCTTAACTACACCTCAGAACCGTTAGCCGCAATCCAGGTCAGGAAGCCCGCCCCCTCTGCTCCAGGCTTGTAGCCCTTTGCCCCCACGCCCGGCCTTCTCCCCCCACCCCTTGACATCCCTCAATCATTCAATTATTCTATTGAATATCAATATATCGAACGAAAATATGCAGAGCCTGGCCCAACAAAGCAGGCGAGGCACGAGACAGAAACGGCAGGGTCAGGCGCCGAGCCAGGCCCACCAACAACGGTGCGCCGTCCGTCTCAGCCAGCAGACAAGAGCACCCAGAAGTAGACAGGAGTATATAAAAGAAGAGCGTAAAGTAGGAAAGAGTAGGGCAGAGTAGAAAAGAGCAGAACAAAAAAGAAGAGGAGAGCAGAGATCGGCGTGGCATACCAGCACCCTGAAAGCAAGCGAGCCTTTAAAAACCAGCTCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCTTATTTAGCCCGCTCGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 45-229 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000095.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 45 36 100.0 38 .................................... TGTCGGAAGATCGCTCTAGCTCGCTTAGGGTCGGCATG 119 36 100.0 39 .................................... AGATGATCAAAGCAGCGTCCCCGCTGGCCAACCTGCTCC 194 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 44 GTCGGAACACCGCGTAAGCCCGCTGAGGGATTGAAA # Left flank : ATTGAAATTTGCCCCCCTCCAAACCAGCCCTCAAAATTGTTTTTG # Right flank : AAAGGGATTGGAACCGATGGGGGATTGAAAAAGGGATTGGAACCTGCAATCACGAGCTGGCCCTGGCCTGCGGAGGGCGAGGGCCAGGCCCCTACTCGTATTCAATCCCCATCTTCTGCATCATCTTGCGCTGGAAGGTGTTGAGCAAAGAGATGCTCTGCTGCTGCTCGTTGAGCCGCGCCTCCAGCACACTAAGCCGCTGCTCAAAGCCGGCCATCCGGTTCTCAAACGTATTCATGCGGATCTCCACCGCATTCAGCCGGTGCCCCTGATCCCGCACCTCGGCCACCAACTGCTGCAGCAGCCCGATGATATCCGTGAGCTGCCCGCTCACCTTCGCCTCAAAGGCGGCAAAGCGCTGCTCCAATGATCCGTTCTCCATCACGGTCTTCCTTTCTCCTGCTGGCCTCCTGCAGGCGCCATCTGTCAACCAGACCCCTACTCGTATTCAATCCCCATCTTCTGCATCATCTTGCGCTGGAAGGTGTTGAGCAAAGAGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACACCGCGTAAGCCCGCTGAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 1235-1419 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000095.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1235 37 100.0 36 ..................................... CCAGGTGCCTGGCGATTGCTCCCTGGGGCAATCCTC 1308 37 100.0 38 ..................................... ACCCCCGTTAGGGGGGTGACAGGCAACCCAACCGTGTG 1383 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 ATCGGAACGCTGCTCTTGCCCATTCAGGGATGAGGAC # Left flank : GCTGCTGCTCATTGAGCCGCGCCTCCACTGTCGTCACCCGGGCTTCCAGTGCCCCGAGCCGGTGCCCCTGATCCCGCACCTCGGCCACCAACTGCTGCAGCAGCCCGATGATATCCGTGAGCTGCCCGCTCACCTTCGCCTCAAAGGCGGCAAAGCGCTGCTCCAGTGATCCGTTCTCCATCAGGCTCTCCTCATACGAAGGTGCATGGCTGCGTCTGAATACCCTGGCCTTTACCATACCATCCCGAGCCACCGCCGTCAACCCTTCCCAAGGCAAGGTGCTCCCTCTTGCTGCCGCTGGTGCCGCTGTTGCCGTTCGCTTCGAGCATCCCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGACCACAGGGGCTGGCATCATGACCGCGCACAACTGGTCACTGCTGACCGCTTTTGTGGGATGCTCGAAACAGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAGAGAAGACC # Right flank : CAGAAACGAGGAGGGATGAGCAATTGCCTACCCAAGAAGAGCGGCTGTCAGCAGTCGAGCGCGCTCTCATGGATATCAACCACAATGAGACCATCCTGCTCGGCATGGCAGTGAAGCACGAAGAGCTACTACGGGAGATCCGCGCGACGCTGGCGCAGATCCTGGCTCGCCTCGATGCCCATGATAAGCAATTCGCCGCCATTGATAAGCGCTTCGACGACCATGATAAGCAATTCGCCGCCATTGATAAACGGTTCGACGACCATGATAAACGGTTCGACGACCATGATAAGCGCTTCGATCGACTCGAGGCTCTGCTGATGCAGGTGCTCGCTCGCCTGCCGGAGCCATAGCGGGCAGTGGAGCCTGTCCTGAAGGAGAAAGAAGATGCCTACCCCCGAGGAGCGCTTGAGCCTGCTGGAGCAGACGGTTGCTGAATATCGACCGGTCCTACGAGATGTCGTCTACGAACTCACCATTGTCAAAGGATTGGTGACGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAACGCTGCTCTTGCCCATTCAGGGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 5371-6810 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000096.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5371 37 100.0 37 ..................................... GCGTCCAGAACGCAAGGAGAGGAGCGTACAGCGCACA 5445 37 100.0 35 ..................................... TTCGATCCTGAATCTGGTAACACCAGTGTCGCCGC 5517 37 100.0 39 ..................................... TTCTTTTTTCGATCACTGCCGCACAGGCACACAAACACT 5593 37 100.0 37 ..................................... CAACTGCAACACCGGCTTTGACTAACACGTCTTGCCA 5667 37 100.0 37 ..................................... GTTGTCGGTACGTTCGAGTGGCCTTGTTCAAGCTCAT 5741 37 100.0 36 ..................................... ATGTAGCTCTTCCGTGGCGTAGATGCGCTCTGCCAA 5814 37 100.0 37 ..................................... ATTTCCTTGGACAGATGGGGCTATTGTGAGCTGAGCT 5888 37 100.0 38 ..................................... AATCTGCTCGCAAGCCGCTTCCGCGTGCTCTGCACGAA 5963 37 100.0 35 ..................................... GATGACGGCTCATCTAGCGGAAATCCGCTGTTAAA 6035 37 100.0 39 ..................................... TTCTGTCAAACAGAACACGCGCTTTCTTGCTTTTTCTGG 6111 37 100.0 37 ..................................... ATGCTGGATCTTGAAATGCTACCGAAAATTGAAGAGC 6185 37 100.0 37 ..................................... TCAGCAAAAGATTGACGAGTGGCGGGGCTTCCCCCTG 6259 37 100.0 36 ..................................... ACCTTAGCCGCCAAATAGCGGCCTGGGTCCCTTTGG 6332 37 100.0 38 ..................................... TCGACGGTGGCAAAACGTGGCAGCCAGCCGCAATCAAT 6407 37 100.0 36 ..................................... ACCGGCACCAAAGAAGCGTCTGGCGGTTTCTCGCGC 6480 37 100.0 36 ..................................... TACCGGGCTACAGTGGGCTTGTGGCGCAGTTGTTTG 6553 37 100.0 36 ..................................... ACGGAAGCGCTCTGCAATGCGCTCAGCATAACAGTG 6626 37 100.0 37 ..................................... GGTCCATCCGGGCAGGGTCAGATCTATCCGGCACAAA 6700 37 100.0 37 ..................................... CGTCCTGCAGCAGCTCCCCCTGAGCCGCGCCGCCGCC 6774 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 100.0 37 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : GTGCTGGAAAGCCTTCGCAAAGCGAGATGTGTGCTCTACGCAGGTGTTTCTCCCTTTCCGATAGACATAGTCAGTAGATCACATGACAGAAAAGGGAGCCTCCCTCGGGCTTAAGCGGGCGGGAGGAAGGTGGAGGTCGGGGCCGAAGGCTCCTTCCTCCACCTTCAAAGTTGCAGGCCGAGCCGAAACCCCTGGCGATGAGGGTCGTATGAGCGATCGATTCGAAACTCTCCGGAGCCAGCAACTAAATGCGGTCAGATTCTGACCGCATTACCATGAAAGTGTGCATGTTTTACTCTTTCTATGATGAAGATAAGGCTTATGCGCTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAATATCGTAAGGCGATGTATTTTGAGAGGGGGAGGGAGAGAAAAACGAGCCTTTCAGATGCCAAAAACGGGGCCTCAATCGTTGTAGTCTATGGAAGAAGTATCCCGGGTTCGCTTTCGTTGGGCGCG # Right flank : GTTATCCTTTCTATTGTCAACGGATTTTTCTTTTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 374-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000059.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 373 37 100.0 37 ..................................... CCTGGCTCAATGCCGTGCAATGCAGCGCCTCTTCAGC 299 37 100.0 38 ..................................... ACCGACGCAGGATTGCGCGGAATACGCTCCGCCTCCAG 224 37 100.0 35 ..................................... GCCTGGACAGCGAATGTACTCGGATTTGTGGCCTC 152 37 100.0 37 ..................................... ACACCAGCAAGCCAACCAGGCAGAGCAGCAGCTCAAG 78 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTCGGAACACCGCGTAAGCCCGCTGAGGGATTGAAAT # Left flank : CTGCTGCTCCAGGCGATCCAGGCGCACCTGGACCTGCGCGACCTCTCCACTCAGCGTGTCGAGACGCTGCTCGATCCGCTCTGTCCGCTCCTTGAGGGCATCCAAATCCATCCGCAGGATGCCATAGAGTATGGTCGTATCCTTCGCCAGGTTCCGGTAGACAAACTCCAGCTCGCTGACGCGCCGCTCCAGGTCGGCAATCCGCTGCTCCATCGGGCCCTCCTGAACACTGCTGCCTCTACCTTACCATCCCCCGCAGTCGCTGTCAAGCGCTGCTCACGAGACCCCACTCTGCCGCTGGTGCCGCTGTTGCCGTTCGCTTCGAGCATCCCGGCACCCGGCTTCCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGACCACAGGGGCTGGCATCATGGCCGCGCACAACCGGTCACTGCTGACCGCTTTTGTGGGATGCTCGAAACAGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAAAGGGGGCT # Right flank : TCTCCAGTGGCCAACCTGCTCCGAGGCATGCCGCAGCGTCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACACCGCGTAAGCCCGCTGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 4779-3706 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000059.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4778 37 100.0 38 ..................................... CCTTCCGCAGACCCAGGCCCCCGCGGCGCCGTTTGCGG 4703 37 100.0 39 ..................................... TCGTCAGGCAAACTAGTCGTGAGCGACTACCCTGGCTGC 4627 37 100.0 36 ..................................... TTTACACATTTCACACATTAACTATCTCTCGTATAG 4554 37 100.0 37 ..................................... TCCGTGTCCAGGCCGGTGCACCCCGACAAAGAACGCA 4480 37 100.0 39 ..................................... CCGGGGAGAAGGCTTCAATAAGTCTTGGGGATGCCTTGG 4404 37 100.0 35 ..................................... CAAGCAATGCAGCCGTCTGAGCCACGATATACACA 4332 37 94.6 38 ......................C.C............ TGCTGTCGAGGCGGGGCTGTGTCAGGACAAGCGGCAGT 4257 37 94.6 35 ......................C.C............ TGTCTTATCCAACTCACCTGTCTTATCTATCTCAC 4185 37 94.6 36 ......................C.C............ CGACTGAGCGTAACCTCGATTACCCGCTTTCGCCGC 4112 37 94.6 36 ......................C.C............ ACGGAACCTCATCAGGTGGGGCGGTGGTGATTCAAG 4039 37 94.6 35 ......................C.C............ GAGACCAGAAAAGGTTGCTGTCCGGCAGTCGTTGA 3967 37 94.6 38 ......................C.C............ GACTCTACGAGGGTAGACCCGGCTGCTTGGCCGTCATT 3892 37 100.0 36 ..................................... CGGATCGGCGAAGATCCCGACGATCCCGCGGATGAT 3819 37 100.0 40 ..................................... TTTACCGGCTTGATGCACTCGACGTCCGCTGCTCACGACA 3742 37 94.6 0 ......................C.C............ | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 97.5 37 GTCGGAACGCTGCTTAAGCCCGATGTGGGATTGAAAG # Left flank : CTGCTCCAGGCGATCCAGGCGCACCTGGACCTGCGCGACCTCTCCACTCAGCGTGTCGAGACGCTGCTCGATCCGCTCTGTTCGCTCCTTGAGGGCATCCAAATCCATCCGCAGGATGCCATAGAGCATGGTCGTCTCCTTCGCCAGGTTCCGGTAGACAAACTCCAGCTCGCTGACGCGCCGCTCCAGGTCGGCAATCCGCTGCTCGCTCCATCGGACCCACCTGAACACTACTGCCTCTCCCTTACCATCCCCCGCAGTCGCTGTCAAGCGCTGCTCCTGAGACCCACTCTGCCGCTGGTGCCGCTCGGGCCGTTCGCTTCGAGCATCTCGGCTCCCGGCATGCCACGCAGCGATGCTCGAAGGGCCTCACAAGCTGCCGCAGGGCCACAAGGGCTGGCATCATGACCGCATAACAGCGGTCACTGCTGACCGCTTTTTTGGGATGCTCGAAACAGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAGAGGGGACT # Right flank : CCATTCCTGCTCTCCCCTGCTCGGGGACGGACCCCTTTCCTCTGCGTTCCCGTTTCCTTCCTGTCTGTTTCCCAGGGTGTTCCCCTCTCGTTCCCGCGTGGTTCCCGGGTCGCGCGGGTATGCTTGCAGTGTTGCGAATGTGTTGCGGCCTCGGGAAGGCGAAGCGCTGCCGCCGGCGTTTCCCCCTGATCCCAGAGCACTCTCCCACCCAGGGCAGGAACAGACGATGCCCCTGGCGCTGTGCCTGGCCTGACCTGGCTCGCAAGGGGACCGCTCCGCTGGAACGCCGCACCGCACCAGCCTGACACGGACAGCCGCAGCCGGCCTGCGCTGGTTGAGCCCCGCTCTCGCCAGGTCGGTGACCCGCTCGCTCGCTGTCCAGGGATGCCAGGAAGGGAACGCACCCTTTCGCGCGCTCCAGACAGCTTCACCGCGGTCTAAACAGAGCGACAGAAGAGAACGGGGGACTCGTCCCCTCCCCGCTCGCTGTCCAGAGGGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACGCTGCTTAAGCCCGATGTGGGATTGAAAG # Alternate repeat : GTCGGAACGCTGCTTAAGCCCGCTCTGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 16973-19049 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000059.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================ ================== 16973 37 100.0 38 ..................................... CTTTTCTAAGTGTATGTTCCCTAATAAATGTGATAATC 17048 37 100.0 38 ..................................... TCACGGGCGGGGCAATTGGAAGTCGTCTCAGTTGATGA 17123 37 100.0 34 ..................................... GCCGCAATCGCTGCTAAGGGAGAGATCTACCATC 17194 37 100.0 39 ..................................... CGACTCATCATCTCAGATTGTGGTGCCTCCTGTGCCAGA 17270 37 100.0 37 ..................................... AAACCCGCCTTATCAAAGCTCCCTCAGATTCATCCAT 17344 37 100.0 36 ..................................... GATCATGCGCGCGATAGTGGATGCCCTGTCGATTGC 17417 37 100.0 37 ..................................... GGTTCGCCGATATTGGTACGTCGATGGGGTCTTTTTA 17491 37 100.0 40 ..................................... CCCGAATCGGCGGATGTATGCAGCGATGACCTCAGACCTG 17568 37 100.0 38 ..................................... GCAGCGCGCTGCGCGGCGAGAAGCGCCAGCCGGCGGAT 17643 37 100.0 38 ..................................... TTTCCTATTGCCCCCTATATATATTATGGTATCATATT 17718 37 100.0 38 ..................................... CACGCTGGACATCCAGTACCCAGAACCGTCCATCTTCC 17793 37 100.0 34 ..................................... ATGGCACGTGAAATTGAACGCCTGTATCGGCGAG 17864 37 100.0 38 ..................................... TCCATGCGAGGGAGCCACTGAAAACCCATTGTGGTCAA 17939 37 100.0 37 ..................................... GCTTCTGCGGTCTCGCCGCTGCTGACTGGAGGCCGAG 18013 37 97.3 36 .........T........................... GTAACGACCGAGCGCTACTTACGGTCGCTCCGTCCC 18086 37 97.3 38 .........T........................... TGGCCAGTCCAATCGGATATCTGGCCTGGTCAGCTATC 18161 37 100.0 37 ..................................... CCCTCGCTTTCCCTTGCAAGGGAAGTGTCGCACTGAA 18235 37 97.3 37 .........T........................... CCCTCGCTTTCCCTTGCAAGGGAAGTGTCGCACTGAA 18309 37 97.3 35 .........T........................... GCAAACCGGCTGGGTCCGACCACTCACTGATCCGG 18381 37 97.3 35 .........T........................... TGGCTGTGCCGATGGCCGCCGCTGTCACCGGCAAG 18453 37 97.3 37 .........T........................... TCGACTTGCACGGGCGTGATAGACCGTGCCAGTTGAC 18527 37 97.3 35 .........T........................... TCATAATCTTACAATAAAACTCTAACACTAATAAC 18599 37 97.3 42 .........T........................... ACCAACGAGGCGCTCCTGAAATCGCTCGACGAGAGCGATCGA 18678 37 100.0 36 ..................................... CTTGAAATGAATACCGCACGCAACTACTCTGTTTCC 18751 37 100.0 38 ..................................... ACCTCGTCCCAGGTGCCGCCCGGGCCGAGGATCTCGCG 18826 37 97.3 37 ...................................G. GCCAGCTCCTCCAGTCGGCGCCGGATCTCGGAGTCAT 18900 37 91.9 76 .........T....C...................G.. AAGGGATTGAAACCATCGGCACAAACCGGGCGCGCCCGGCAAGCCTGGCCTCGCTCTACGACGAGACCAGGCTTGC 19013 37 78.4 0 A......GGC....C.......C.A...........C | ========== ====== ====== ====== ===================================== ============================================================================ ================== 28 37 98.1 39 GTCAGAACCGCGCTTAAGCCCGTTGAGGGATTGAAAG # Left flank : AGGGATGTCAGGAAGGGAAGGCATCCCTCCGCTCCCCACAGACGGCTTCCACGCGGTCGAAACAGAGCGACAAGAGAACGGGGGACTCGTCTCTCCCCGCTCGCTGTTCAGAAGGGAAAGAAGCCATGCTGTTCCCCTTTCTGCGTTGGTGGACCGCTCTCTCACTGGCTGATCACTCGTGGTGATCGTGACCTCCCCACCAGCGACTGTTTTCCCGAACCCTGTCGCCTCTGCCTTCTCATCCCGAGCCATCGCCGTCACCCCTTGCCGAGGCGAGGCAGGTCCCTCTTGCTGCCGCTGTTGCCGCTGCTGCCGTTCGCTTCGAGCATCTCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGGCCACAGGGGCTGGCATCATTGCCGTACAAAAGCGGTCACTACTGACCGCTTTTTTGGGATGCTCGAAACGACTTGACGGAGGCCGCTCCTGATGCTACTCTAGAGAGGGGGCT # Right flank : CAGTGGAGAAAGGGCTGGTGTTTTCCTGGTTGGAAGAGGATACAGAGCAGTGGCCTGACCGATCGCCCCCTAGGAAAAGTAGAGGCGCTCTTCGCGTGGTGGCTCGCCCCCCACGGTGACAACGCGCTTCACACAGGCCTGGCAGAGAGGATAGATGCGGACACTATCCTCCCGCTCATTCAGGTGAGCTGCCAGGCGCGCACGGAGCAGCACAAGCTCTTTCCTGGTCAGGAAGCACTCGAATACCGAATACTGGGTCCATTTGCCAAAGCCACAGAGGAGCTTGTGTACACGAGCGCGGCGCCGATCATCAGCGATATCGTAGGCAATGACATAGCAGCAAGTATCATGGGGTCCCATACGGTTACCTCACCAGGAACGGCTGATAGTGCGCGATCTCCCCAGTCAGGTACTTGGCCAGCAGACGCGCCTGCAACTCAAGGCAGCGCATGTAACTCACGCGATAGCCGAACACGGGATGGGTAATTTCCTCGTGAAAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACCGCGCTTAAGCCCGTTGAGGGATTGAAAG # Alternate repeat : GTCAGAACCTCGCTTAAGCCCGTTGAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 4 31991-32698 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDGT01000059.1 Thermogemmatispora onikobensis strain NBRC 111776, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 31991 37 100.0 38 ..................................... TTCATCTGTATTGAGGAGGATCTCATGACTCACCGTCC 32066 37 100.0 39 ..................................... CGCTATCGGGTCTTGGCTCTGCCCACCACCCTCGACGGG 32142 37 100.0 38 ..................................... TGACCAGTTTCGTAGATCGATGACCACAGCACCGCAGG 32217 37 100.0 33 ..................................... TCAGCAGCGGCTGCTCGCTGACAACCGAGCCAG 32287 37 100.0 39 ..................................... GTCGAGAGAGAGGGCGGGCTACGGCTCCGCCCCAAGACC 32363 37 100.0 39 ..................................... GATGAGTACGTAACCGTGGCGCTCTACGAGCGCCGTGGC 32439 37 100.0 36 ..................................... TAAGAGGAATTTTTGATAAATAGTCGTAATATTCTG 32512 37 100.0 39 ..................................... CTTCCGACATGACTACTGATGGGAAGAGCGTAATGCGAA 32588 37 97.3 37 ....................T................ CTTGCAAGATGCGGAGCCTGATCCTGAAAGGGAGCGC 32662 37 94.6 0 ..................................G.G | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.2 38 GTCAGAAAGCAGGACAAGCCCGATGTGGGATTGAAAC # Left flank : CCGGCGGAGTCGGGCATCATCTGTGGCCTCCTCCCGATCGATGCCGTAGTGCAGCCCCAGGCTCTCGAAAATCTGCTTGCGGGTGCAAGGCCCTTGTCGCAGCAGTGCCAGCAAGCGCAAAAGCCGCTCGAGCCGGAGGACGGCAAGCCTTTCCTCTGAGGAAAAAGGTTCAGCGCGTTGGAAACCGGCCATGCACTGCTTTCCCTCCATCAATGCAAGAGAGATGCCTTTTACCATAGAGTCTTGAGCGCCCGCTGTCAAGGTCCAGGCACCTCTGCTGTCGGGAAAAATATGCTGCTGTTGCCGCTGCTGCCGTTCGCTTTGAGCATCTCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCTTCCCAGGCCGTCGGAAGGCCAGAGTGGCTGGCATCATGACCGTACAAATGCGGTCAGTAGTGACCGCTTTTTTGGGATGCTCGAAACCGCTTGACGGAAGTCGCTCCTGATGCTACGCTAAAGGGGGTGCT # Right flank : GGGATTAGAAGGGGTTGAAGACGAGAGAAAGATGGTGATGGACCGTCTGGACCTGCAAGCAATCAGAAAGCAGGACAAGCCTGTCAACTTCCCTCACATCGGAGTCCCCCACCGGCGGACCTCTGGTTTCGTCGAATGCAAGTACTCCGTTCAGCATGCGCAAGACGGAGTAGAAGACTGGATGGAGTTTTTGACGCGGCTCTGACTTCCTTTCCTACATCATTAGAAGAAGCTCCCCGGCTCGACCAGCAGCCTTCCACATGGCGCCGCTCCTCAGAAGGAAGAGGCTACTCCCCATAAGGCAACCCAGCTGTGCCACAGGCGCCCTGCGCAGGAAAAATCTCACTCCCTCCACGAGGGAACCTCTCATCGACCAAAAGCAAAATCACGTCTTGCCTGCTTCCTCCCACCCTCAACCTGCTCCTCCTGCCTCAGTTCCCAGATTCCTGCTTTGCCTGCCTTCCCTGCGAAACAAGCTGCTCCGGGGCTACACCCAAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCAGGACAAGCCCGATGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //