Array 1 3567-3359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZG01000001.1 Pluralibacter gergoviae strain DS82E24 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3566 28 100.0 32 ............................ CCGGAAAATATTCGCCAGGTCCATCAGGACTG 3506 28 100.0 32 ............................ TGTGTAAAGGCTATGCCAAAGCATATACACCC 3446 28 100.0 32 ............................ GTCTTGCTGGACCAGACAGCAACCCGCTTCAT 3386 28 78.6 0 ..G..................CCCA..C | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTCAGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTCGGCAAGCTCGTAGACGGCGGCCAGGTGACGGTCGACCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAGAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGCCCGGCGGTGGTGAAAATGAATAGAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGACTGGGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACGTATTGATTTTCAATATGCATTTCAGGTGATAATAAAAAAGGGTCTGCGCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTGTTCGATGGTCA # Right flank : TCCGGACATAAAAAAGCCGGGAATTGACCCGGCTTAACTATTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGAGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90897-91697 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZG01000004.1 Pluralibacter gergoviae strain DS82E24 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 90897 29 100.0 32 ............................. CAATGACTGCTCCGTTGTTTTAAATGAATTAT 90958 29 100.0 32 ............................. GCAAATTTATTGCCACCGGCGGTGACCGTCCC 91019 29 100.0 32 ............................. ACCACGACTGGGATGCTACCCGCTACCGAGTA 91080 29 100.0 32 ............................. CCTCTGCCCGGATCTCAGTCTCTGGCGCTGAG 91141 29 100.0 32 ............................. CGCCGCACCGCGTGATCTCTGGCGTCACCATC 91202 29 100.0 32 ............................. CAGCAGGAGCAGGCGCTGTTCTTTATCTGCGA 91263 29 100.0 32 ............................. CGGGTTAGGCTTGATGCCATGACGTTTAGCAA 91324 29 100.0 32 ............................. TAACCAGAATACGCCGGACTGACAAGGTGATG 91385 29 96.6 32 ..........T.................. CAAAATGATTTATTCAGAAAACGAGAAATGGG 91446 29 100.0 32 ............................. AGAGTGCCGTCCTACAGGCTACACCTCGTTAT 91507 29 100.0 32 ............................. TTGGGATGCGAGAAAACGACGGTCTGCTTGAT 91568 29 93.1 72 ............T.....A.......... GCTGGCTATCACGCCCACGGCCGCGCGTCCCGGTGTTCACCGCGCCAGGCAATCAGCATGGGAGCTTACCGT 91669 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ======================================================================== ================== 13 29 98.9 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACTTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCATTTAGA # Right flank : GATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTTATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGTTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101945-102889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZG01000004.1 Pluralibacter gergoviae strain DS82E24 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101945 29 100.0 32 ............................. GCAGCATCCCAGGAGAGGAAGGATAATAACTC 102006 29 100.0 32 ............................. GTCGGGCCTGAATACCGTCTCACATGCGGCAT 102067 29 100.0 32 ............................. AGAACGAGTTTGACGTTTTCTACGATACGCCG 102128 29 100.0 32 ............................. CGCCCTGGTTATCTCCTTGCGTGTTTTCAGCC 102189 29 100.0 32 ............................. CCCACCAGGCACATTTGAACTGTCTCCGCTGT 102250 29 100.0 32 ............................. GAGCTGATTTCGTCTGCGATAGAGACATCCTC 102311 29 100.0 32 ............................. CCCACCAGGCACATTTGAACTGTCTCCGCTGT 102372 29 100.0 32 ............................. GCCGCGCGAGGTGAATGATGTCTCCAGCATTG 102433 29 100.0 32 ............................. TTATTCTCGGCGTTTACAGTCCCGACGAGGTT 102494 29 100.0 32 ............................. CAATGGTGCGATCCTCTATTTCCTCGGCACCT 102555 29 100.0 32 ............................. AGTTCGACGCTATCGAAACCCCGGCCACCGAC 102616 29 96.6 32 ............................C GGGACATGGCTCGGGTGCTGACTGATGGCGTC 102677 29 100.0 32 ............................. GCGCAGGGTAAAACGGTAGACCGGGTTATGGC 102738 29 100.0 33 ............................. GGTGACATTCTCGACTATGACGGCAGCACGCTG 102800 29 100.0 32 ............................. TTGTTATACCCGTCAGCTGTCCGCACGGGCTT 102861 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTGATGGCCTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGGCTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : GACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATTACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCGAGGCGCGGGTCGTGCCAACTGGTGCCCTCGGGGAAGGTGCGGGACTTGGCCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCTTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCACGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGATTGGAGGCGGCCGGTACGCCCCAGCGGTGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //