Array 1 1022807-1014632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065738.1 Rothia kristinae strain FDAARGOS_864 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1022806 36 100.0 37 .................................... TCCGCTGTCCGGGAGTGGCAGGCTAGGGGCGCCCTGC 1022733 36 100.0 36 .................................... CAGTCCTCTAGGGCTTGTCCGGGATGTTTGGTGATC 1022661 36 100.0 38 .................................... CGGAGGGACTACTGGATGAAGGTCAAGGATCCGGCGAT 1022587 36 100.0 36 .................................... GGGCCGCGGGATGGGCCGAAGTGCACGAACGAGCAG 1022515 36 100.0 37 .................................... AAGGACCTACCCGCCCCGGCCGGGCTGGAGTCCCTGA 1022442 36 100.0 36 .................................... CCGGGACCGGGTGCCGGCCGGGTGAGGTGCTCGCCC 1022370 36 100.0 36 .................................... GGGAAGATTCTCCGTACTCTCAAGCACGACATACGC 1022298 36 100.0 37 .................................... CGGCATGACGGCAACCCGTCAAGCCGGTACCCAGGTT 1022225 36 100.0 36 .................................... TGACTGGGAGCCCTTCGCGCCGGTGGCCCGTCGGTA 1022153 36 100.0 34 .................................... GACTCCATGGCCTCCCGCGCCTCGACCTCCCTCG 1022083 36 100.0 37 .................................... CCCTCATAGGGCTCTCCGGTCATGTGCGCACGGTTCT 1022010 36 100.0 34 .................................... CGGTGGGGTGTCCGCCGGGGCGTCATCGCCAAGA 1021940 36 100.0 36 .................................... CGGTCGAAGGCTCAGGTGCTCAAGGCTCGCACGAGG 1021868 36 100.0 35 .................................... TGCGACGCCAACAACCTCGGAGACTGGGCTGGCGA 1021797 36 100.0 36 .................................... ACCCCCGGCAACCCCGCCGCGAACACCCCCGCCAAC 1021725 36 100.0 38 .................................... GGACGGCGCTACGGAAGAGCTCTAGCGAGTCATCAGTA 1021651 36 100.0 34 .................................... CTGGAGCGGTGCCGGGAGACGTACCCCATCATGG 1021581 36 100.0 36 .................................... GCGGCCAGGGCCAGCTCCACCTGGGACTTTCCAGAG 1021509 36 100.0 35 .................................... CCCACGCGGAACACCACGCGCAGGGCCTTGGTGTC 1021438 36 100.0 35 .................................... GCACTCGACGGCCCGGCGCTGAGCCACGGTCAGAC 1021367 36 100.0 36 .................................... GAGTTAAAGGGAAGCGCTCAGAACCCTTGCAAACAC 1021295 36 100.0 39 .................................... ATGAGCGGTGGGGGTTCTGATCTTGGTCCGATTCGAGAC 1021220 36 100.0 39 .................................... TCCTTTGCCTTAGTGGGGTGCACACCCCAGCTTCACGGG 1021145 36 100.0 35 .................................... CAAAGGAGAAGATCATGCCGCCCTAGCCGGACACA 1021074 36 100.0 38 .................................... GTGAGACAAGTCCGGGCCCTCGATGACACCAGCGGTGA 1021000 36 100.0 35 .................................... GGCGAGACCCGGGATGAGGACGGCGACTGGGTGCC 1020929 36 100.0 35 .................................... TCACCCGTGTTCGTCGGAACTGAAACGGTCATCCA 1020858 36 100.0 38 .................................... GCACCCATCATTCCCCTTGATTGCGGCTCTGCGCCTGT 1020784 36 100.0 34 .................................... GTCTTTCCACCGGGCGCTAGCGTCTTTGCCGGTC 1020714 36 100.0 35 .................................... TGGATCGACTAGGTGTTTCGTGCGCGGGACCCGGG 1020643 36 100.0 36 .................................... CAGAACGTCGTGCTGCCGGTGTGGACGGCCATCCGC 1020571 36 100.0 36 .................................... CAGTCCGTGAATCCGTCCCAGATCCTCCGCACACCC 1020499 36 100.0 36 .................................... AGCGACTACCTCTACAAGGCCGCGGGAACAACCCAG 1020427 36 100.0 39 .................................... AGTGACGTCATGTAGCCGTACGACGACACGGGAACTCGA 1020352 36 100.0 39 .................................... AGTGACGTCATGTAGCCGTACGACGACACGGGAACTCGA 1020277 36 100.0 38 .................................... CCGAATCGCGCCGCTTCGCGGCCGACCTGACTCACAGG 1020203 36 100.0 36 .................................... GCCAAGAAGGCCTTGATCGTGGCCAGGACACCGTCC 1020131 36 100.0 35 .................................... GCCCAGGCCCCCGTCGTCGTCGTGAGCCAGAGGGG 1020060 36 97.2 35 ............C....................... TGGCCGTGCACAAGGGGAACCGCATCGAGCTGGAC 1019989 36 100.0 34 .................................... TACCTCGAATCCAGCGCTCGCGGGATCACCCTGC 1019919 36 100.0 38 .................................... AGTTGAGTCATCGCCAAGGCGGACAGGTCGAACAGACC 1019845 36 100.0 37 .................................... GACTGAGTAACGCAATCCCCATCGTCCCTAACCGTGA 1019772 36 100.0 37 .................................... ATCCCCGCGCCGGCCGGCACATGATGCGGGAGCTGAA 1019699 36 100.0 36 .................................... CACCGCCGAAGAGGACGAGGCAGGGGAGTAGGCCAT 1019627 36 100.0 36 .................................... ATGACCCGGGTGGGCGCCTACTACCAGGCCCAGAAG 1019555 36 100.0 34 .................................... TGCACGACACCGGCCGGCTGGTACTTAGCCCCGT 1019485 36 100.0 36 .................................... CCGAAGCTCCACTCCGGAACGTAGCCCTCCTCGAAC 1019413 36 100.0 37 .................................... ACCCAGGTGAGGCGCCCCGCATCCGTGGTGTGCTTAA 1019340 36 100.0 37 .................................... GGCAGCGGTCCAACTCATTCGCTCCAGTCTCCCGCGT 1019267 36 100.0 40 .................................... CGCGTTTCCGCGTCCGGTGCCCGCATCTCCGGCTCCTAAC 1019191 36 100.0 35 .................................... TGAGTTGTCTACTCGGTTGGCATTCCCCATGGCGG 1019120 36 100.0 33 .................................... TAGGAGGGCCGGAGGATCGAACGTACCGGACCA 1019051 36 100.0 36 .................................... ACCAAACGAACCCGCGCACTCCGGCACCACGTCCAA 1018979 36 100.0 39 .................................... TACATCGTGATCCACTTCGGCACCGAGGCGGAGCTGGTG 1018904 36 100.0 36 .................................... GCCATGCGCCCTCCTTGGGGTATGGGAAGGGCCCGC 1018832 36 100.0 37 .................................... CGCCTGCAAGGTTCCCTGGCAAGCTAGTTGAGAGTGC 1018759 36 100.0 36 .................................... CCGACCTGCGCGGCTGCTGGGTCGTCCGTGTAGACC 1018687 36 100.0 36 .................................... GTGATGGAGGGCTCCGCGGAGGTCGTGCGCGTCCTG 1018615 36 100.0 35 .................................... AGTCGCCGGACGAGCCAGGCGTAGATGTCTAGGCG 1018544 36 100.0 36 .................................... CACGTCCACGAGAGTACACACACCCGTGACCAAAAG 1018472 36 100.0 37 .................................... AGACCGATCCCCTGTGCCGCTGAGTAGATGCCACCCA 1018399 36 100.0 36 .................................... GCGGACACCAGCTCCGGGGCCATCAGGTCCCGGGCG 1018327 36 100.0 36 .................................... ACCACGCGGGACGGCGTGGAGGGCACGTCCCTGGAG 1018255 36 100.0 36 .................................... CTCAAGACTAGCTAGGTCCAGGGCACGACGCAACCC 1018183 36 100.0 36 .................................... CGCAGGTCACGGGTCCAGGAGTCCCAGTTGAAGTAC 1018111 36 100.0 36 .................................... AACAAGCCGGAGGAAGACCTGGACCTGACCGTGAAG 1018039 36 100.0 35 .................................... ACCGACTTGATGGGGTTCACGGGTGACCCCTCGAA 1017968 36 100.0 35 .................................... GTGCGGCAGGTCCGGGCTCTGGATGACGTCAGCAG 1017897 36 100.0 35 .................................... TGCGTCAATCAAGCGGCGTGAGGTCGCCGCTGACG 1017826 36 100.0 37 .................................... CGGTCAGCGACCCACCCAACTCCTCGTTCGTCGGCCA 1017753 36 100.0 37 .................................... CACTCCACGACGCCGCCGACTTCGAGGCCGCGCTGCG 1017680 36 100.0 35 .................................... TTGGCGACGGCGACGGCGTCGTGCAGCTCCCGCTG 1017609 36 100.0 34 .................................... TTCGCGCAGCACCCGGAGCACGTGCTGGGTGAGC 1017539 36 100.0 35 .................................... GTCTACCCGCCTTAGCGCGCTTCAAGTCCATGCCG 1017468 36 100.0 36 .................................... CGGTAACCGTGAACCCCATAGCGTTACGTCTACCCG 1017396 36 100.0 37 .................................... GGGCCTGGGAAGCTCACCGTGTGGACCTTGGTTGTTA 1017323 36 100.0 35 .................................... GCCCCGCGGGTCCGCTTCCACTCCGGGGAGGCCAG 1017252 36 100.0 35 .................................... AGCGAAGCGCAATCAGCTGCGGGAAGCAATCGCAA 1017181 36 100.0 34 .................................... CAGAACACGGGGGGTAGGGTGCGGGCGCTGGTCC 1017111 36 100.0 37 .................................... GGAAAATCAACATTAGTGCGGCACATGAATCTGGCGT 1017038 36 100.0 33 .................................... CATTCGCGCCGGTGGTGCCGCCAGTGGTGGAAA 1016969 36 100.0 36 .................................... GCGAACGTCACCCCCGAGCCGAGCCCGTGGACCGGC 1016897 36 100.0 36 .................................... GTAAGGAAAATCCGAGACCTCAGCGGTAAATACGAG 1016825 36 100.0 35 .................................... CTGTTGCGACGCCGGACAGTTTGCCTAATCCCGCG 1016754 36 100.0 38 .................................... ATGGCCGAGCTGAACCGCATCATCGGAAGGATCGACTC 1016680 36 100.0 36 .................................... GACTTCTGAGGAGCATCATGAGCAACACCATCATCC 1016608 36 100.0 37 .................................... GCGCGCGGTGCCCGGTCTGTCGCCGCCGTCGCCGTCG 1016535 36 100.0 35 .................................... CGGCATGACGGGGAGCCGTCAAGCCGGTATGCAGG 1016464 36 100.0 36 .................................... GCCTGGGCGAACGCCTGCTCGAACGTCCGCTCCGTC 1016392 36 100.0 38 .................................... CCTTATAGACCTGAACGTCCCCACCCAACTGTACTTTC 1016318 36 100.0 36 .................................... CGTGGAGGCGAACGGATCGTCGGAGTAGACCGTGCT 1016246 36 100.0 36 .................................... GGCACCAACAAGCCCTCTTTCTGGCCGTCGGGGGAT 1016174 36 100.0 36 .................................... CTCCCCCCGATCCGGGTCTACGACCGGCGAGTGCAG 1016102 36 100.0 35 .................................... TGCTCGAGGGGGTCGAATTCTCCGCGGAGGGCCGC 1016031 36 100.0 34 .................................... CCGTGACGGGGGAGCTCGCGTCCCGCATCAAAGA 1015961 36 100.0 36 .................................... GACGAGGTGCTTCGGGCAGGCGATACGGAGGTGGTG 1015889 36 100.0 33 .................................... GGTTCCAGGCCCACGGGATCACCTCGGCCTTGA 1015820 36 100.0 36 .................................... TGGACAACGGGCCCGCCCTGCGCGCTGACATCGCCG 1015748 36 100.0 36 .................................... GGTGGAGTACTCGTCGAGGGCCCCGTGCGCCCGGCA 1015676 36 100.0 37 .................................... TGTGAATGGTCATACGTTCGTTGTCTCCCACGTCTTT 1015603 36 100.0 37 .................................... TGTGAATGGTCATACGTTCGTTGTCTCCCACGTCTTT 1015530 36 100.0 37 .................................... TGTGAATGGTCATACGTTCGTTGTCTCCCACGTCTTT 1015457 36 100.0 37 .................................... CCTGCTGCGGGCGCACATCACCAACGAGCTGCCCCCG 1015384 36 100.0 35 .................................... GTTTGTCGGCATGGGCCTGGCCATCTTTGGTGCGT 1015313 36 100.0 36 .................................... CGAGAAGACGAAACCACCGGTCACACCCCCACGGGG 1015241 36 100.0 37 .................................... GAGTCCCAGCGGGCGGAGTTCCTGGCGCAGAAGGAGG 1015168 36 100.0 36 .................................... GGCGTTGAAGGGTGACGGGGGTCGTGATGCCGGTGC 1015096 36 100.0 36 .................................... AAGTCCGCGGTGGATGACAGCAGTCGGAAGCTCCAG 1015024 36 100.0 35 .................................... CGCCGTCGTGCCCCCGGGAGGCTCAGGTCTTTCGT 1014953 36 100.0 35 .................................... TCCGTGTCGGGGTGCTTCGCGGCCGCGGCGTCGAA 1014882 36 100.0 35 .................................... CTGAAGACTGGTCTGCGCGCTGACGGGATCGTGAT 1014811 36 97.2 36 ............G....................... CTCTCGGATGGACGTGCCGACACTGGACGCATGGAT 1014739 36 100.0 36 .................................... CGGGTTCAGGTAACCCGCGCCATTCCTGGGAATCGT 1014667 36 94.4 0 .....................T.............A | ========== ====== ====== ====== ==================================== ======================================== ================== 114 36 99.9 36 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCGGGATGATGTCCGCCGGTATCTCGTCACCTATGACGTGGCTCAGGACCGGCGCCGAACCCGGCTGGCGAAGGAGTTGGAGCACTACGGGGACAGGATCCAGTACAGCGTATTCCTCTTCGACGTCTCACCGGCGGCGATGCTGCGACTGAAGACGGAGATCCTGGATCTGGTGGATACGGGGGAGGATTCCGTGCTGATCTGTGATCTGGGACTGAAGTCCGAGGTCTCCGACAAGAACTTCCAGTACCTGGGAGTGGAGCGTCCGATCACGGACGACTCCGTGATGATCTTCTGACGGCCCTGGTGCGTACTCGAGGAACCGCGAGCGCTCCGGCGGTAGCGGATCCTCGGCGAGCCGTCGCGCCACTGCTTTCCCCGGTATTCCGCGGCGGAGCGCCCCATCCCGGGGTGACACGGCCGGCTTCCGCTAGGCTGTGGAGCGAGCGCTCGCATGACCCTCGGTTTCCCATAGTCAGACCGCGTCAATTTCGGTCAGG # Right flank : AATGTCGACGCCGAGGTGCAGGTAGCACACGCGACCCACGCTCCCCTTTAGGGGGAGGCCTTCGCCCGCTCCAACAGCCGGACGCACCTCAGGCATCGTCGACGTCCGCCACAGTAGAATCGAAGCCACAACGACGTGCGCCACCGAGCAAGGAGCGATCAGCGATGGTCCGCCTCAGCGACCTCATCTCCGTCCCAGCGATCCAGTTGGAGGTCGATGCCGAGGACTGGCGCAGCGCCATCCAGCACGCCGGAGCGCTCTTGGCCGACGTCGGCGTCGCCGGGCCGTCCTACACCCAGGCCATGGTCGACGTCGTCGAGGAGCACGGGCCGTACATCGTCATCACGCCTGGCTTCGCCCTGGCTCATGCCCGACCGGACGCCTCGGTGACCGCCACCGGCCTGTCCTTCGTCCGCCTGGCCGCACCCGTGCGCTTCGGTCACGCCTCCAACGACCCCGTCACCATCGTGATGGCGCTGGCCGCACAGGACCCTGGCGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //